Wall clock time and date at job start Sat Apr 11 2020 07:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.52998 * 109.47073 * 293.95231 * 3 2 1 5 5 N 1.46498 * 109.47216 * 180.02562 * 4 3 2 6 6 C 1.34784 * 119.99908 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00256 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99671 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47071 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00157 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99880 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00035 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99908 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99976 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47110 * 60.00365 * 14 12 10 16 16 H 1.48503 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46985 * 299.99905 * 14 12 10 18 18 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 19 19 C 1.53000 * 109.46769 * 66.05138 * 18 2 1 20 20 N 1.46499 * 109.46840 * 180.02562 * 19 18 2 21 21 C 1.35047 * 126.03732 * 124.99681 * 20 19 18 22 22 C 1.35374 * 107.72715 * 179.97438 * 21 20 19 23 23 Cl 1.73606 * 126.04495 * 179.97438 * 22 21 20 24 24 C 1.39930 * 107.90732 * 0.02562 * 22 21 20 25 25 N 1.30848 * 108.21317 * 359.75705 * 24 22 21 26 26 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 27 27 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 28 28 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 29 29 H 1.09003 * 109.47188 * 53.95311 * 3 2 1 30 30 H 1.08993 * 109.47221 * 173.95234 * 3 2 1 31 31 H 1.09003 * 109.47179 * 300.00086 * 4 3 2 32 32 H 1.09002 * 109.47148 * 59.99731 * 4 3 2 33 33 H 0.97002 * 119.99984 * 359.97438 * 5 4 3 34 34 H 1.09003 * 109.47258 * 299.99741 * 8 6 5 35 35 H 1.09005 * 109.47216 * 60.00071 * 8 6 5 36 36 H 0.96999 * 120.00000 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.47401 * 306.04845 * 18 2 1 38 38 H 1.09001 * 109.46874 * 186.04858 * 18 2 1 39 39 H 1.09001 * 109.47194 * 299.99524 * 19 18 2 40 40 H 1.08992 * 109.47399 * 59.99697 * 19 18 2 41 41 H 1.07996 * 126.13783 * 359.94856 * 21 20 19 42 42 H 1.08004 * 125.89055 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1569 3.4249 -1.3185 6 6 1.9556 4.2240 -2.3851 7 8 1.3399 3.8108 -3.3448 8 6 2.4956 5.6309 -2.3851 9 16 2.0652 6.4424 -3.9447 10 6 2.7985 8.0225 -3.6801 11 1 3.3182 8.2288 -2.7561 12 6 2.7093 9.0018 -4.6596 13 7 2.0765 8.7503 -5.7860 14 14 3.4874 10.6768 -4.3794 15 1 4.9481 10.5147 -4.1663 16 1 3.2525 11.5367 -5.5671 17 1 2.8798 11.3107 -3.1819 18 6 1.9954 -0.7659 1.1377 19 6 1.6315 -2.2425 0.9704 20 7 2.1560 -3.0063 2.1052 21 6 1.4397 -3.8085 2.9220 22 6 2.2896 -4.3278 3.8388 23 17 1.8675 -5.4225 5.1184 24 6 3.5683 -3.8253 3.5733 25 7 3.4899 -3.0372 2.5318 26 1 -0.3633 0.4513 0.9233 27 1 -0.3634 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0708 29 1 1.5610 1.9274 0.8309 30 1 3.0796 1.3445 0.1083 31 1 2.0658 1.5015 -2.1492 32 1 0.5471 2.0844 -1.4266 33 1 2.6490 3.7556 -0.5508 34 1 2.0615 6.1867 -1.5540 35 1 3.5800 5.6039 -2.2773 36 1 2.0138 9.4348 -6.4704 37 1 1.5611 -0.3871 2.0629 38 1 3.0797 -0.6609 1.1757 39 1 0.5472 -2.3475 0.9324 40 1 2.0658 -2.6213 0.0452 41 1 0.3791 -4.0008 2.8560 42 1 4.4658 -4.0519 4.1298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567271011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:48 Heat of formation + Delta-G solvation = 44.867745 kcal Electronic energy + Delta-G solvation = -23620.537129 eV Core-core repulsion = 19790.008455 eV Total energy + Delta-G solvation = -3830.528674 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 346.097 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.81075 -39.37379 -38.33991 -36.89433 -34.96975 -33.71149 -32.43754 -30.95673 -30.33562 -28.96157 -28.14830 -26.26366 -25.46103 -23.30749 -21.78478 -21.58116 -21.10423 -20.38392 -18.09723 -17.82223 -16.58270 -16.53135 -16.26960 -15.89518 -15.41660 -15.29221 -15.07833 -14.81127 -14.47872 -14.41087 -14.23025 -13.83576 -13.70175 -13.45408 -13.12771 -13.00036 -12.56363 -12.37215 -12.24166 -12.05882 -11.98376 -11.75526 -11.62646 -11.34749 -11.05509 -11.04448 -10.95629 -10.77804 -10.11899 -9.83648 -9.45388 -9.07291 -9.00562 -8.93346 -8.91805 -8.25329 -6.51159 -6.22336 -3.93214 1.16964 1.40024 2.05680 2.23367 2.88825 3.07412 3.22241 3.22934 3.28030 3.42349 3.82259 3.92352 4.15513 4.19746 4.28770 4.40088 4.48001 4.65071 4.71460 4.79888 4.92122 4.99502 5.04484 5.12613 5.12796 5.15388 5.21558 5.27418 5.47514 5.60624 5.69518 5.80214 5.85001 5.88135 6.12033 6.20825 6.36293 6.43688 6.60103 6.98022 7.58337 7.65696 8.34135 8.58105 9.22843 10.85060 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.039481 B = 0.001265 C = 0.001241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.040368 B =22122.468948 C =22549.525228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.535 5.535 3 C 0.047 3.953 4 C 0.124 3.876 5 N -0.740 5.740 6 C 0.533 3.467 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.046 3.954 19 C 0.137 3.863 20 N -0.361 5.361 21 C 0.074 3.926 22 C -0.190 4.190 23 Cl -0.044 7.044 24 C 0.064 3.936 25 N -0.277 5.277 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.042 0.958 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.183 0.817 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.548 -27.154 21.937 34.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.259 5.259 3 C -0.081 4.081 4 C 0.000 4.000 5 N -0.395 5.395 6 C 0.319 3.681 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.083 4.083 19 C 0.016 3.984 20 N -0.144 5.144 21 C -0.074 4.074 22 C -0.229 4.229 23 Cl -0.015 7.015 24 C -0.123 4.123 25 N -0.098 5.098 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.200 0.800 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.946 -27.249 18.874 33.204 hybrid contribution 0.618 1.410 3.147 3.503 sum -1.328 -25.839 22.020 33.975 Atomic orbital electron populations 1.22641 0.86785 1.02589 1.01762 1.61742 1.08440 1.13717 1.42036 1.22261 1.00996 0.87689 0.97123 1.21183 0.99464 0.82253 0.97125 1.45915 1.59595 1.13623 1.20410 1.20294 0.79207 0.86841 0.81766 1.90708 1.39468 1.75154 1.33642 1.23533 1.03989 0.94962 1.07932 1.85400 1.73308 1.10974 1.13617 1.22830 1.41209 0.98515 1.05973 0.90975 1.24983 0.95128 0.98966 0.94420 1.70005 1.39664 1.34529 1.06087 0.86227 0.79555 0.81875 0.77863 1.19924 1.20788 1.19955 1.22310 1.02204 0.91660 0.92105 1.21821 0.99436 0.90945 0.86242 1.48507 1.05712 1.35512 1.24622 1.22292 0.98809 0.94479 0.91824 1.20798 0.94664 1.07656 0.99746 1.98338 1.93327 1.61583 1.48300 1.23933 0.97627 0.95495 0.95275 1.77528 0.95933 1.22029 1.14318 0.95063 0.89977 0.91095 0.93829 0.89745 0.90589 0.91548 0.76912 0.89233 0.89160 0.92112 0.93974 0.88892 0.88111 0.88009 0.79973 0.79135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.13 60.07 0.55 0.61 16 2 N -0.53 -3.72 4.76 -242.91 -1.16 -4.88 16 3 C 0.05 0.37 5.07 -3.82 -0.02 0.35 16 4 C 0.12 1.37 5.61 -4.04 -0.02 1.35 16 5 N -0.74 -9.43 5.56 -60.29 -0.33 -9.77 16 6 C 0.53 9.77 7.85 -10.98 -0.09 9.68 16 7 O -0.52 -11.62 15.86 5.56 0.09 -11.53 16 8 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 11 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 13 N -0.87 -26.09 13.22 55.49 0.73 -25.35 16 14 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 18 C 0.05 0.28 5.15 -3.82 -0.02 0.26 16 19 C 0.14 0.68 6.43 -4.04 -0.03 0.66 16 20 N -0.36 -2.42 3.68 -61.33 -0.23 -2.65 16 21 C 0.07 0.42 11.43 -17.16 -0.20 0.22 16 22 C -0.19 -1.27 6.65 -39.97 -0.27 -1.54 16 23 Cl -0.04 -0.28 29.30 -51.86 -1.52 -1.79 16 24 C 0.06 0.45 12.02 -17.34 -0.21 0.24 16 25 N -0.28 -2.38 12.42 30.64 0.38 -2.00 16 26 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.08 0.58 6.30 -51.93 -0.33 0.25 16 28 H 0.07 0.29 6.47 -51.93 -0.34 -0.04 16 29 H 0.04 0.32 8.12 -51.93 -0.42 -0.11 16 30 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.78 6.47 -51.93 -0.34 0.44 16 33 H 0.40 3.83 8.47 -40.82 -0.35 3.49 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 38 H 0.09 0.68 7.93 -51.93 -0.41 0.27 16 39 H 0.10 0.28 6.48 -51.93 -0.34 -0.06 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.18 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.19 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -35.71 385.97 -9.18 -44.89 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.85 Total: -1.26 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 0.12 Total: -3.92 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.60 Total: -44.65 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.52 Total: -1.79 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.71 -9.18 -44.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567271011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.758 kcal (2) G-P(sol) polarization free energy of solvation -35.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds