Wall clock time and date at job start Sat Apr 11 2020 07:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.52998 * 109.47073 * 293.95231 * 3 2 1 5 5 N 1.46498 * 109.47216 * 180.02562 * 4 3 2 6 6 C 1.34784 * 119.99908 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00256 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99671 * 179.97438 * 6 5 4 9 9 S 1.81001 * 109.47071 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00157 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99880 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00035 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99908 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99976 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47110 * 60.00365 * 14 12 10 16 16 H 1.48503 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.46985 * 299.99905 * 14 12 10 18 18 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 19 19 C 1.53000 * 109.46769 * 66.05138 * 18 2 1 20 20 N 1.46499 * 109.46840 * 180.02562 * 19 18 2 21 21 C 1.35047 * 126.03732 * 124.99681 * 20 19 18 22 22 C 1.35374 * 107.72715 * 179.97438 * 21 20 19 23 23 Cl 1.73606 * 126.04495 * 179.97438 * 22 21 20 24 24 C 1.39930 * 107.90732 * 0.02562 * 22 21 20 25 25 N 1.30848 * 108.21317 * 359.75705 * 24 22 21 26 26 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 27 27 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 28 28 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 29 29 H 1.09003 * 109.47188 * 53.95311 * 3 2 1 30 30 H 1.08993 * 109.47221 * 173.95234 * 3 2 1 31 31 H 1.09003 * 109.47179 * 300.00086 * 4 3 2 32 32 H 1.09002 * 109.47148 * 59.99731 * 4 3 2 33 33 H 0.97002 * 119.99984 * 359.97438 * 5 4 3 34 34 H 1.09003 * 109.47258 * 299.99741 * 8 6 5 35 35 H 1.09005 * 109.47216 * 60.00071 * 8 6 5 36 36 H 0.96999 * 120.00000 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.47401 * 306.04845 * 18 2 1 38 38 H 1.09001 * 109.46874 * 186.04858 * 18 2 1 39 39 H 1.09001 * 109.47194 * 299.99524 * 19 18 2 40 40 H 1.08992 * 109.47399 * 59.99697 * 19 18 2 41 41 H 1.07996 * 126.13783 * 359.94856 * 21 20 19 42 42 H 1.08004 * 125.89055 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 -1.3183 5 7 2.1569 3.4249 -1.3185 6 6 1.9556 4.2240 -2.3851 7 8 1.3399 3.8108 -3.3448 8 6 2.4956 5.6309 -2.3851 9 16 2.0652 6.4424 -3.9447 10 6 2.7985 8.0225 -3.6801 11 1 3.3182 8.2288 -2.7561 12 6 2.7093 9.0018 -4.6596 13 7 2.0765 8.7503 -5.7860 14 14 3.4874 10.6768 -4.3794 15 1 4.9481 10.5147 -4.1663 16 1 3.2525 11.5367 -5.5671 17 1 2.8798 11.3107 -3.1819 18 6 1.9954 -0.7659 1.1377 19 6 1.6315 -2.2425 0.9704 20 7 2.1560 -3.0063 2.1052 21 6 1.4397 -3.8085 2.9220 22 6 2.2896 -4.3278 3.8388 23 17 1.8675 -5.4225 5.1184 24 6 3.5683 -3.8253 3.5733 25 7 3.4899 -3.0372 2.5318 26 1 -0.3633 0.4513 0.9233 27 1 -0.3634 0.5740 -0.8525 28 1 -0.3633 -1.0252 -0.0708 29 1 1.5610 1.9274 0.8309 30 1 3.0796 1.3445 0.1083 31 1 2.0658 1.5015 -2.1492 32 1 0.5471 2.0844 -1.4266 33 1 2.6490 3.7556 -0.5508 34 1 2.0615 6.1867 -1.5540 35 1 3.5800 5.6039 -2.2773 36 1 2.0138 9.4348 -6.4704 37 1 1.5611 -0.3871 2.0629 38 1 3.0797 -0.6609 1.1757 39 1 0.5472 -2.3475 0.9324 40 1 2.0658 -2.6213 0.0452 41 1 0.3791 -4.0008 2.8560 42 1 4.4658 -4.0519 4.1298 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567271011.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:47 Heat of formation + Delta-G solvation = 18.568935 kcal Electronic energy + Delta-G solvation = -23621.677531 eV Core-core repulsion = 19790.008455 eV Total energy + Delta-G solvation = -3831.669076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 346.097 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.27054 -40.67467 -39.05494 -37.36270 -35.99452 -34.58261 -34.38984 -31.85084 -31.14312 -29.81989 -28.85059 -27.67887 -26.86130 -23.97238 -22.31379 -22.18064 -21.82942 -21.48549 -19.82764 -18.52572 -17.81018 -17.47391 -17.10069 -16.87331 -16.70627 -16.34805 -16.10220 -15.78874 -15.60969 -15.17092 -15.05703 -14.78844 -14.60500 -14.29559 -14.25266 -14.04264 -13.52396 -13.44705 -13.16691 -12.97818 -12.86240 -12.73213 -12.62961 -12.45709 -12.40888 -12.17594 -12.06783 -11.74232 -11.42751 -11.12516 -11.00497 -10.60318 -10.27792 -10.12999 -9.51545 -9.41795 -8.66488 -8.34106 -6.12442 0.72294 0.96455 1.26708 1.44359 1.46786 1.56330 1.57495 1.60321 1.78505 2.17732 2.28254 2.94586 3.00103 3.33613 3.49499 3.77954 3.81574 3.86753 3.96759 4.00439 4.04724 4.24820 4.30556 4.33142 4.38303 4.51220 4.51589 4.55818 4.61522 4.75073 4.77765 4.86637 4.93012 5.08469 5.34464 5.38127 5.42050 5.77693 5.85181 5.96093 6.19997 6.48335 6.50462 7.07147 7.23100 8.74902 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.039481 B = 0.001265 C = 0.001241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.040368 B =22122.468948 C =22549.525228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.543 5.543 3 C 0.058 3.942 4 C 0.127 3.873 5 N -0.713 5.713 6 C 0.534 3.466 7 O -0.565 6.565 8 C -0.130 4.130 9 S -0.152 6.152 10 C -0.548 4.548 11 H 0.083 0.917 12 C 0.015 3.985 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.262 1.262 18 C 0.056 3.944 19 C 0.137 3.863 20 N -0.365 5.365 21 C 0.081 3.919 22 C -0.206 4.206 23 Cl -0.044 7.044 24 C 0.058 3.942 25 N -0.313 5.313 26 H 0.037 0.963 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.417 0.583 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.097 0.903 41 H 0.214 0.786 42 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -27.331 24.291 36.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.268 5.268 3 C -0.071 4.071 4 C 0.003 3.997 5 N -0.368 5.368 6 C 0.320 3.680 7 O -0.443 6.443 8 C -0.281 4.281 9 S 0.075 5.925 10 C -0.696 4.696 11 H 0.101 0.899 12 C -0.190 4.190 13 N -0.548 5.548 14 Si 0.819 3.181 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.186 1.186 18 C -0.073 4.073 19 C 0.017 3.983 20 N -0.147 5.147 21 C -0.067 4.067 22 C -0.245 4.245 23 Cl -0.016 7.016 24 C -0.128 4.128 25 N -0.135 5.135 26 H 0.055 0.945 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.254 0.746 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.115 0.885 41 H 0.231 0.769 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -1.635 -27.452 21.292 34.780 hybrid contribution 0.508 1.322 2.501 2.874 sum -1.127 -26.130 23.793 35.357 Atomic orbital electron populations 1.22684 0.86004 1.03805 1.01384 1.61703 1.09196 1.13177 1.42696 1.22119 1.01556 0.88180 0.95205 1.21246 0.98905 0.80941 0.98644 1.45624 1.58195 1.13680 1.19266 1.20049 0.78856 0.86702 0.82377 1.90697 1.41926 1.75890 1.35816 1.23374 1.05355 0.95478 1.03886 1.85582 1.74388 1.12658 1.19842 1.23184 1.41192 0.98695 1.06540 0.89866 1.26113 0.95458 1.03533 0.93906 1.70175 1.41267 1.36073 1.07257 0.85015 0.78867 0.76069 0.78113 1.18677 1.20410 1.18642 1.22178 1.01238 0.92266 0.91623 1.21912 1.00910 0.89901 0.85608 1.48632 1.05306 1.35764 1.24987 1.22806 0.99984 0.93173 0.90717 1.20944 0.94869 1.08307 1.00366 1.98335 1.93277 1.61604 1.48347 1.24272 0.98561 0.94999 0.94986 1.77479 0.97349 1.23309 1.15344 0.94481 0.91399 0.89025 0.92635 0.89054 0.92211 0.92124 0.74632 0.87069 0.87132 0.91986 0.93905 0.90318 0.85395 0.88481 0.76943 0.77720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.13 127.69 1.17 1.25 16 2 N -0.54 -6.56 4.76 -922.44 -4.39 -10.96 16 3 C 0.06 0.78 5.07 86.30 0.44 1.22 16 4 C 0.13 2.65 5.61 86.38 0.48 3.14 16 5 N -0.71 -16.98 5.56 -463.05 -2.57 -19.55 16 6 C 0.53 19.30 7.85 87.66 0.69 19.99 16 7 O -0.57 -26.00 15.86 -3.03 -0.05 -26.05 16 8 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 10 C -0.55 -31.15 9.50 67.95 0.65 -30.50 16 11 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 12 C 0.01 0.84 5.49 84.86 0.47 1.30 16 13 N -0.91 -55.87 13.22 21.65 0.29 -55.59 16 14 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 15 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 18 C 0.06 0.58 5.15 86.30 0.44 1.02 16 19 C 0.14 1.09 6.43 86.38 0.56 1.64 16 20 N -0.36 -4.28 3.68 -347.95 -1.28 -5.57 16 21 C 0.08 0.75 11.43 83.54 0.95 1.71 16 22 C -0.21 -2.49 6.65 22.02 0.15 -2.34 16 23 Cl -0.04 -0.50 29.30 -2.72 -0.08 -0.58 16 24 C 0.06 0.78 12.02 85.25 1.02 1.81 16 25 N -0.31 -5.14 12.42 -56.98 -0.71 -5.84 16 26 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.07 0.88 6.30 -2.38 -0.02 0.86 16 28 H 0.09 0.50 6.47 -2.39 -0.02 0.48 16 29 H 0.06 0.65 8.12 -2.39 -0.02 0.63 16 30 H 0.09 1.14 7.93 -2.39 -0.02 1.12 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.06 1.39 6.47 -2.39 -0.02 1.37 16 33 H 0.42 6.85 8.47 -92.71 -0.79 6.06 16 34 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 35 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.04 0.45 8.12 -2.39 -0.02 0.43 16 38 H 0.08 1.06 7.93 -2.39 -0.02 1.05 16 39 H 0.13 0.29 6.48 -2.39 -0.02 0.27 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.21 0.42 8.06 -2.91 -0.02 0.40 16 42 H 0.21 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -80.01 385.97 -0.22 -80.23 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.26 Total: 12.51 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 7.45 Total: -4.36 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -8.67 Total: -97.50 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.08 Total: -0.58 kcal Total: -80.01 -0.22 -80.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567271011.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.803 kcal (2) G-P(sol) polarization free energy of solvation -80.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds