Wall clock time and date at job start Sat Apr 11 2020 07:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99615 * 2 1 4 4 H 1.48496 * 109.47080 * 234.96250 * 3 2 1 5 5 H 1.48500 * 109.47058 * 354.96275 * 3 2 1 6 6 H 1.48501 * 109.46667 * 114.96107 * 3 2 1 7 7 C 1.38809 * 120.00156 * 179.73211 * 2 1 3 8 8 H 1.07999 * 120.00016 * 1.86483 * 7 2 1 9 9 N 1.36932 * 119.99852 * 181.87008 * 7 2 1 10 10 C 1.47068 * 136.05937 * 353.87306 * 9 7 2 11 11 C 1.53754 * 87.88854 * 152.96524 * 10 9 7 12 12 C 1.53005 * 114.08862 * 139.78043 * 11 10 9 13 13 C 1.53001 * 109.46784 * 206.62401 * 12 11 10 14 14 O 1.42908 * 109.46413 * 185.08766 * 13 12 11 15 15 N 1.46499 * 114.57365 * 272.65973 * 11 10 9 16 16 C 1.34771 * 120.00405 * 278.91404 * 15 11 10 17 17 O 1.21705 * 120.00164 * 5.25493 * 16 15 11 18 18 C 1.46586 * 120.00281 * 185.25547 * 16 15 11 19 19 S 1.75830 * 125.45679 * 0.02649 * 18 16 15 20 20 C 1.70617 * 91.56427 * 179.97438 * 19 18 16 21 21 C 1.33814 * 110.95589 * 359.97438 * 20 19 18 22 22 C 1.36648 * 125.46098 * 179.71552 * 18 16 15 23 23 C 1.50700 * 123.34687 * 0.02562 * 22 18 16 24 24 F 1.39893 * 109.47431 * 299.99579 * 23 22 18 25 25 F 1.39902 * 109.47451 * 60.00271 * 23 22 18 26 26 C 1.47068 * 136.05531 * 174.24429 * 9 7 2 27 27 H 0.96998 * 119.99829 * 185.02760 * 1 2 3 28 28 H 1.09003 * 113.46668 * 267.69495 * 10 9 7 29 29 H 1.08994 * 113.46990 * 38.13247 * 10 9 7 30 30 H 1.09000 * 109.47055 * 326.62547 * 12 11 10 31 31 H 1.09000 * 109.46788 * 86.62411 * 12 11 10 32 32 H 1.08992 * 109.47691 * 305.08343 * 13 12 11 33 33 H 1.09001 * 109.46917 * 65.09380 * 13 12 11 34 34 H 0.96706 * 113.99388 * 180.02562 * 14 13 12 35 35 H 0.97001 * 119.99731 * 98.90830 * 15 11 10 36 36 H 1.08003 * 124.52229 * 179.97438 * 20 19 18 37 37 H 1.07998 * 122.45189 * 180.02562 * 21 20 19 38 38 H 1.09011 * 109.46763 * 179.97438 * 23 22 18 39 39 H 1.09004 * 113.46842 * 321.86239 * 26 9 7 40 40 H 1.09001 * 113.46839 * 92.24588 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1938 1.6447 -1.1463 5 1 1.2898 2.7438 -0.1229 6 1 3.0093 1.7510 1.2693 7 6 2.0103 -1.2021 0.0056 8 1 1.4708 -2.1373 -0.0204 9 7 3.3791 -1.2021 0.0443 10 6 4.4405 -0.1863 -0.0228 11 6 5.3266 -1.1400 0.7953 12 6 6.7855 -1.1849 0.3365 13 6 7.3933 -2.5408 0.7012 14 8 8.7859 -2.5402 0.3804 15 7 5.1799 -1.0128 2.2474 16 6 5.8277 -0.0321 2.9068 17 8 6.4571 0.8052 2.2870 18 6 5.7742 0.0263 4.3705 19 16 4.9125 -1.1040 5.4056 20 6 5.4092 -0.2701 6.8088 21 6 6.1716 0.7838 6.4946 22 6 6.3910 0.9644 5.1495 23 6 7.2255 2.0874 4.5896 24 9 8.2974 1.5555 3.8651 25 9 6.4381 2.8774 3.7451 26 6 4.4350 -2.2188 0.1647 27 1 -0.4850 -0.8368 0.0736 28 1 4.8096 -0.0104 -1.0332 29 1 4.1924 0.7360 0.5024 30 1 6.8312 -1.0449 -0.7435 31 1 7.3460 -0.3909 0.8298 32 1 7.2665 -2.7205 1.7687 33 1 6.8910 -3.3274 0.1380 34 1 9.2370 -3.3707 0.5852 35 1 4.6166 -1.6345 2.7342 36 1 5.1437 -0.5549 7.8162 37 1 6.5873 1.4420 7.2431 38 1 7.6071 2.6991 5.4073 39 1 4.1823 -3.0281 0.8498 40 1 4.8020 -2.5794 -0.7962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570768813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:03 Heat of formation + Delta-G solvation = -76.418409 kcal Electronic energy + Delta-G solvation = -29582.691314 eV Core-core repulsion = 25162.813846 eV Total energy + Delta-G solvation = -4419.877468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.66609 -46.66267 -40.38868 -38.73947 -37.46619 -36.68576 -33.70951 -32.34815 -31.11736 -30.29840 -27.84554 -27.05141 -25.67965 -23.77546 -23.25117 -22.13272 -20.87562 -19.52348 -18.99901 -18.76737 -17.55815 -17.32430 -17.17594 -16.94246 -16.25827 -15.92442 -15.73658 -15.14165 -14.80406 -14.64636 -14.29166 -14.12828 -14.05581 -13.49346 -13.43364 -13.32016 -13.07362 -13.00338 -12.95155 -12.70164 -12.32424 -11.95579 -11.75991 -11.59959 -11.54342 -11.14555 -10.88838 -10.85105 -10.52596 -10.25881 -9.97808 -9.62581 -9.36878 -9.19455 -9.13808 -8.94760 -8.94340 -8.59655 -7.20199 -6.33215 -3.28039 0.18401 1.12212 1.55503 1.98260 3.12629 3.23307 3.49149 3.51896 3.69095 3.80975 4.16259 4.17712 4.55105 4.59107 4.68587 4.79627 4.84569 4.90211 5.07669 5.17211 5.23462 5.37638 5.39965 5.48057 5.59425 5.68878 5.79116 5.84727 5.88689 5.99012 6.09853 6.14004 6.36721 6.41790 6.57306 6.92445 7.01273 7.63714 7.65833 8.19000 8.31763 8.93416 9.45707 10.29591 11.18206 Molecular weight = 346.09amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.005231 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.209773 B = 5351.898825 C = 6353.042908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.018 4.018 3 Si 1.068 2.932 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.290 1.290 7 C -0.305 4.305 8 H 0.083 0.917 9 N -0.624 5.624 10 C 0.094 3.906 11 C 0.136 3.864 12 C -0.121 4.121 13 C 0.082 3.918 14 O -0.573 6.573 15 N -0.686 5.686 16 C 0.580 3.420 17 O -0.497 6.497 18 C -0.214 4.214 19 S 0.244 5.756 20 C -0.240 4.240 21 C -0.124 4.124 22 C -0.126 4.126 23 C 0.341 3.659 24 F -0.188 7.188 25 F -0.186 7.186 26 C 0.125 3.875 27 H 0.260 0.740 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.374 0.626 35 H 0.399 0.601 36 H 0.175 0.825 37 H 0.151 0.849 38 H 0.113 0.887 39 H 0.049 0.951 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.204 -4.292 15.023 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.217 4.217 3 Si 0.901 3.099 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.219 1.219 7 C -0.430 4.430 8 H 0.101 0.899 9 N -0.352 5.352 10 C -0.032 4.032 11 C 0.048 3.952 12 C -0.160 4.160 13 C 0.004 3.996 14 O -0.378 6.378 15 N -0.337 5.337 16 C 0.365 3.635 17 O -0.373 6.373 18 C -0.335 4.335 19 S 0.513 5.487 20 C -0.378 4.378 21 C -0.155 4.155 22 C -0.143 4.143 23 C 0.285 3.715 24 F -0.169 7.169 25 F -0.167 7.167 26 C -0.002 4.002 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.220 0.780 35 H 0.235 0.765 36 H 0.192 0.808 37 H 0.168 0.832 38 H 0.130 0.870 39 H 0.068 0.932 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.106 -2.765 14.007 20.785 hybrid contribution 0.679 -1.360 0.793 1.714 sum 15.785 -4.124 14.800 22.028 Atomic orbital electron populations 1.70942 1.05290 1.29223 1.51994 1.25626 0.96381 1.00823 0.98873 0.83730 0.73463 0.76112 0.76600 1.21607 1.22306 1.21854 1.20099 0.77267 0.95558 1.50124 0.89931 1.46071 1.00363 1.02072 1.86725 1.23226 0.87849 0.94908 0.97228 1.21769 0.93090 1.00688 0.79653 1.21691 0.93994 0.97700 1.02598 1.22143 0.81115 0.97979 0.98339 1.86513 1.22485 1.40779 1.88045 1.45226 1.48703 1.32257 1.07534 1.16842 0.80289 0.81914 0.84481 1.90872 1.41884 1.37422 1.67157 1.24843 1.07482 1.02936 0.98286 1.83248 1.45447 1.26092 0.93903 1.25252 1.05853 1.01978 1.04736 1.19632 1.01644 0.99682 0.94497 1.20059 1.02003 0.98412 0.93805 1.19751 0.78965 0.86241 0.86553 1.93039 1.55943 1.87541 1.80426 1.93071 1.75180 1.74396 1.74059 1.22632 0.87452 0.92569 0.97543 0.92941 0.92814 0.92043 0.90034 0.88438 0.94168 0.93583 0.78039 0.76548 0.80784 0.83164 0.86978 0.93238 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.46 13.70 55.49 0.76 -28.70 16 2 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 3 Si 1.07 28.51 25.05 -169.99 -4.26 24.25 16 4 H -0.29 -7.36 6.61 56.52 0.37 -6.98 16 5 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 6 H -0.29 -7.68 6.47 56.52 0.37 -7.31 16 7 C -0.30 -8.62 11.09 -15.06 -0.17 -8.79 16 8 H 0.08 2.43 8.05 -52.49 -0.42 2.01 16 9 N -0.62 -15.04 3.69 -184.56 -0.68 -15.72 16 10 C 0.09 2.11 5.36 -8.37 -0.04 2.07 16 11 C 0.14 2.46 0.74 -131.56 -0.10 2.36 16 12 C -0.12 -1.97 5.04 -26.73 -0.13 -2.10 16 13 C 0.08 1.08 6.76 37.16 0.25 1.33 16 14 O -0.57 -7.51 13.66 -35.23 -0.48 -7.99 16 15 N -0.69 -11.75 5.30 -48.62 -0.26 -12.00 16 16 C 0.58 10.36 7.44 -12.90 -0.10 10.26 16 17 O -0.50 -10.22 10.98 5.18 0.06 -10.17 16 18 C -0.21 -3.12 6.43 -36.79 -0.24 -3.36 16 19 S 0.24 2.59 22.17 -107.50 -2.38 0.20 16 20 C -0.24 -2.05 10.92 29.18 0.32 -1.74 16 21 C -0.12 -1.16 9.92 -41.41 -0.41 -1.57 16 22 C -0.13 -1.63 5.36 -105.47 -0.56 -2.20 16 23 C 0.34 4.53 4.98 36.01 0.18 4.71 16 24 F -0.19 -2.97 15.78 2.25 0.04 -2.93 16 25 F -0.19 -3.19 15.77 2.25 0.04 -3.16 16 26 C 0.13 2.31 7.15 -8.50 -0.06 2.25 16 27 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16 28 H 0.05 1.18 7.89 -51.93 -0.41 0.77 16 29 H 0.06 1.54 3.94 -51.93 -0.20 1.33 16 30 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 31 H 0.10 1.82 5.87 -51.93 -0.30 1.51 16 32 H 0.04 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 34 H 0.37 2.95 9.12 45.56 0.42 3.36 16 35 H 0.40 6.12 7.80 -40.82 -0.32 5.80 16 36 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.11 0.92 8.05 -51.92 -0.42 0.51 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -37.29 348.43 -6.88 -44.16 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -3.80 Total: 4.20 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.16 Total: 2.60 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.18 Total: -56.42 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.42 Total: -18.16 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.07 Total: -6.09 kcal Atomic # 14 Polarization: 28.51 SS G_CDS: -4.26 Total: 24.25 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.38 Total: 0.20 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.29 -6.88 -44.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570768813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.258 kcal (2) G-P(sol) polarization free energy of solvation -37.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds