Wall clock time and date at job start Sat Apr 11 2020 07:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99615 * 2 1 4 4 H 1.48496 * 109.47080 * 234.96250 * 3 2 1 5 5 H 1.48500 * 109.47058 * 354.96275 * 3 2 1 6 6 H 1.48501 * 109.46667 * 114.96107 * 3 2 1 7 7 C 1.38809 * 120.00156 * 179.73211 * 2 1 3 8 8 H 1.07999 * 120.00016 * 1.86483 * 7 2 1 9 9 N 1.36932 * 119.99852 * 181.87008 * 7 2 1 10 10 C 1.47068 * 136.05937 * 353.87306 * 9 7 2 11 11 C 1.53754 * 87.88854 * 152.96524 * 10 9 7 12 12 C 1.53005 * 114.08862 * 139.78043 * 11 10 9 13 13 C 1.53001 * 109.46784 * 206.62401 * 12 11 10 14 14 O 1.42908 * 109.46413 * 185.08766 * 13 12 11 15 15 N 1.46499 * 114.57365 * 272.65973 * 11 10 9 16 16 C 1.34771 * 120.00405 * 278.91404 * 15 11 10 17 17 O 1.21705 * 120.00164 * 5.25493 * 16 15 11 18 18 C 1.46586 * 120.00281 * 185.25547 * 16 15 11 19 19 S 1.75830 * 125.45679 * 0.02649 * 18 16 15 20 20 C 1.70617 * 91.56427 * 179.97438 * 19 18 16 21 21 C 1.33814 * 110.95589 * 359.97438 * 20 19 18 22 22 C 1.36648 * 125.46098 * 179.71552 * 18 16 15 23 23 C 1.50700 * 123.34687 * 0.02562 * 22 18 16 24 24 F 1.39893 * 109.47431 * 299.99579 * 23 22 18 25 25 F 1.39902 * 109.47451 * 60.00271 * 23 22 18 26 26 C 1.47068 * 136.05531 * 174.24429 * 9 7 2 27 27 H 0.96998 * 119.99829 * 185.02760 * 1 2 3 28 28 H 1.09003 * 113.46668 * 267.69495 * 10 9 7 29 29 H 1.08994 * 113.46990 * 38.13247 * 10 9 7 30 30 H 1.09000 * 109.47055 * 326.62547 * 12 11 10 31 31 H 1.09000 * 109.46788 * 86.62411 * 12 11 10 32 32 H 1.08992 * 109.47691 * 305.08343 * 13 12 11 33 33 H 1.09001 * 109.46917 * 65.09380 * 13 12 11 34 34 H 0.96706 * 113.99388 * 180.02562 * 14 13 12 35 35 H 0.97001 * 119.99731 * 98.90830 * 15 11 10 36 36 H 1.08003 * 124.52229 * 179.97438 * 20 19 18 37 37 H 1.07998 * 122.45189 * 180.02562 * 21 20 19 38 38 H 1.09011 * 109.46763 * 179.97438 * 23 22 18 39 39 H 1.09004 * 113.46842 * 321.86239 * 26 9 7 40 40 H 1.09001 * 113.46839 * 92.24588 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1938 1.6447 -1.1463 5 1 1.2898 2.7438 -0.1229 6 1 3.0093 1.7510 1.2693 7 6 2.0103 -1.2021 0.0056 8 1 1.4708 -2.1373 -0.0204 9 7 3.3791 -1.2021 0.0443 10 6 4.4405 -0.1863 -0.0228 11 6 5.3266 -1.1400 0.7953 12 6 6.7855 -1.1849 0.3365 13 6 7.3933 -2.5408 0.7012 14 8 8.7859 -2.5402 0.3804 15 7 5.1799 -1.0128 2.2474 16 6 5.8277 -0.0321 2.9068 17 8 6.4571 0.8052 2.2870 18 6 5.7742 0.0263 4.3705 19 16 4.9125 -1.1040 5.4056 20 6 5.4092 -0.2701 6.8088 21 6 6.1716 0.7838 6.4946 22 6 6.3910 0.9644 5.1495 23 6 7.2255 2.0874 4.5896 24 9 8.2974 1.5555 3.8651 25 9 6.4381 2.8774 3.7451 26 6 4.4350 -2.2188 0.1647 27 1 -0.4850 -0.8368 0.0736 28 1 4.8096 -0.0104 -1.0332 29 1 4.1924 0.7360 0.5024 30 1 6.8312 -1.0449 -0.7435 31 1 7.3460 -0.3909 0.8298 32 1 7.2665 -2.7205 1.7687 33 1 6.8910 -3.3274 0.1380 34 1 9.2370 -3.3707 0.5852 35 1 4.6166 -1.6345 2.7342 36 1 5.1437 -0.5549 7.8162 37 1 6.5873 1.4420 7.2431 38 1 7.6071 2.6991 5.4073 39 1 4.1823 -3.0281 0.8498 40 1 4.8020 -2.5794 -0.7962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570768813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:02 Heat of formation + Delta-G solvation = -107.080450 kcal Electronic energy + Delta-G solvation = -29584.020920 eV Core-core repulsion = 25162.813846 eV Total energy + Delta-G solvation = -4421.207074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.77280 -47.80671 -41.82833 -39.95215 -38.57625 -37.75109 -35.38569 -34.22637 -32.55465 -31.20232 -29.19434 -28.55897 -27.33899 -25.03698 -24.35791 -23.27840 -22.61554 -20.72058 -20.22300 -19.84919 -19.62345 -18.41834 -18.25000 -18.05452 -17.68751 -17.11678 -16.83692 -16.43239 -16.20723 -15.94021 -15.65668 -15.52462 -15.37152 -15.08584 -14.88273 -14.67185 -14.51463 -14.17012 -13.95821 -13.62384 -13.54813 -13.33961 -13.23278 -13.04490 -12.90921 -12.59168 -12.43527 -12.28008 -11.92900 -11.75112 -11.36033 -11.24800 -11.22874 -11.00672 -10.71932 -10.22777 -10.00296 -9.71746 -9.26142 -8.64842 -5.50985 -0.73545 0.26070 0.79008 1.19518 1.32419 1.35392 1.54045 1.86937 1.99636 2.39979 2.82721 2.91330 3.06547 3.15950 3.33426 3.50152 3.55522 3.84453 4.03603 4.13542 4.18143 4.20834 4.30742 4.32551 4.33191 4.48574 4.54005 4.62178 4.63438 4.76775 4.78849 4.99363 5.03495 5.09427 5.11368 5.24405 5.49998 5.91167 6.34835 6.66291 6.92836 7.03418 7.26877 8.19802 8.89364 Molecular weight = 346.09amu Principal moments of inertia in cm(-1) A = 0.009390 B = 0.005231 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2981.209773 B = 5351.898825 C = 6353.042908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.071 4.071 3 Si 1.103 2.897 4 H -0.276 1.276 5 H -0.304 1.304 6 H -0.296 1.296 7 C -0.276 4.276 8 H 0.068 0.932 9 N -0.650 5.650 10 C 0.079 3.921 11 C 0.157 3.843 12 C -0.115 4.115 13 C 0.090 3.910 14 O -0.592 6.592 15 N -0.688 5.688 16 C 0.575 3.425 17 O -0.537 6.537 18 C -0.272 4.272 19 S 0.263 5.737 20 C -0.216 4.216 21 C -0.129 4.129 22 C -0.124 4.124 23 C 0.323 3.677 24 F -0.208 7.208 25 F -0.215 7.215 26 C 0.132 3.868 27 H 0.252 0.748 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.397 0.603 35 H 0.407 0.593 36 H 0.215 0.785 37 H 0.190 0.810 38 H 0.169 0.831 39 H 0.073 0.927 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.081 -5.706 17.556 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.935 3.065 4 H -0.202 1.202 5 H -0.232 1.232 6 H -0.225 1.225 7 C -0.403 4.403 8 H 0.086 0.914 9 N -0.378 5.378 10 C -0.047 4.047 11 C 0.069 3.931 12 C -0.154 4.154 13 C 0.012 3.988 14 O -0.400 6.400 15 N -0.339 5.339 16 C 0.362 3.638 17 O -0.415 6.415 18 C -0.393 4.393 19 S 0.533 5.467 20 C -0.353 4.353 21 C -0.158 4.158 22 C -0.143 4.143 23 C 0.268 3.732 24 F -0.189 7.189 25 F -0.196 7.196 26 C 0.007 3.993 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.247 0.753 35 H 0.243 0.757 36 H 0.232 0.768 37 H 0.207 0.793 38 H 0.186 0.814 39 H 0.091 0.909 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.038 -4.244 16.552 24.131 hybrid contribution 0.193 -1.013 0.113 1.038 sum 17.231 -5.258 16.665 24.541 Atomic orbital electron populations 1.70989 1.06309 1.28782 1.55566 1.26361 0.96530 1.03199 1.00341 0.83206 0.72536 0.73956 0.76807 1.20234 1.23170 1.22464 1.20023 0.79530 0.94449 1.46310 0.91449 1.46107 0.99817 1.04981 1.86908 1.23422 0.88600 0.94495 0.98168 1.21459 0.93591 0.98174 0.79924 1.21578 0.92461 0.99143 1.02237 1.21998 0.81479 0.96221 0.99063 1.86447 1.22414 1.42956 1.88212 1.45238 1.48977 1.32609 1.07066 1.17345 0.79308 0.81116 0.86080 1.90840 1.43446 1.38688 1.68539 1.24697 1.11364 1.06198 0.97075 1.83139 1.44414 1.25095 0.94091 1.25801 1.03540 1.00439 1.05542 1.19948 1.01812 1.00594 0.93423 1.20405 1.01044 0.97486 0.95332 1.20592 0.78541 0.87145 0.86926 1.92988 1.56797 1.87954 1.81164 1.93004 1.76106 1.75226 1.75294 1.22843 0.85088 0.92261 0.99122 0.93838 0.92256 0.94798 0.89956 0.90979 0.93502 0.91331 0.75285 0.75675 0.76817 0.79265 0.81446 0.90867 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.96 13.70 21.65 0.30 -62.66 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 1.10 59.78 25.05 68.60 1.72 61.50 16 4 H -0.28 -14.09 6.61 99.48 0.66 -13.44 16 5 H -0.30 -16.62 7.11 99.48 0.71 -15.91 16 6 H -0.30 -16.08 6.47 99.48 0.64 -15.44 16 7 C -0.28 -15.69 11.09 84.03 0.93 -14.76 16 8 H 0.07 4.00 8.05 -2.91 -0.02 3.98 16 9 N -0.65 -30.93 3.69 -737.83 -2.72 -33.64 16 10 C 0.08 3.56 5.36 83.27 0.45 4.00 16 11 C 0.16 5.54 0.74 4.16 0.00 5.54 16 12 C -0.11 -3.65 5.04 30.60 0.15 -3.49 16 13 C 0.09 2.17 6.76 71.98 0.49 2.65 16 14 O -0.59 -14.18 13.66 -148.98 -2.04 -16.21 16 15 N -0.69 -23.27 5.30 -425.96 -2.26 -25.53 16 16 C 0.57 20.73 7.44 86.42 0.64 21.38 16 17 O -0.54 -22.82 10.98 -4.36 -0.05 -22.86 16 18 C -0.27 -7.74 6.43 24.08 0.15 -7.58 16 19 S 0.26 4.96 22.17 -56.49 -1.25 3.71 16 20 C -0.22 -2.73 10.92 66.81 0.73 -2.00 16 21 C -0.13 -1.89 9.92 21.08 0.21 -1.68 16 22 C -0.12 -3.00 5.36 -20.42 -0.11 -3.11 16 23 C 0.32 8.27 4.98 71.24 0.35 8.63 16 24 F -0.21 -6.58 15.78 44.97 0.71 -5.87 16 25 F -0.21 -7.52 15.77 44.97 0.71 -6.81 16 26 C 0.13 4.59 7.15 83.18 0.60 5.19 16 27 H 0.25 16.12 8.73 -92.71 -0.81 15.31 16 28 H 0.06 2.59 7.89 -2.39 -0.02 2.57 16 29 H 0.03 1.73 3.94 -2.39 -0.01 1.72 16 30 H 0.08 2.55 7.89 -2.39 -0.02 2.53 16 31 H 0.07 2.72 5.87 -2.39 -0.01 2.71 16 32 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 33 H 0.07 1.35 7.67 -2.39 -0.02 1.34 16 34 H 0.40 5.16 9.12 -74.05 -0.68 4.48 16 35 H 0.41 12.14 7.80 -92.71 -0.72 11.42 16 36 H 0.22 1.00 8.06 -2.91 -0.02 0.97 16 37 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 38 H 0.17 2.27 8.05 -2.38 -0.02 2.25 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.08 2.49 8.10 -2.39 -0.02 2.47 16 Total: -1.00 -85.80 348.43 -0.24 -86.04 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -0.43 Total: 11.43 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.07 Total: 10.91 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -4.68 Total: -121.84 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -2.08 Total: -39.07 kcal Atomic # 9 Polarization: -14.10 SS G_CDS: 1.42 Total: -12.68 kcal Atomic # 14 Polarization: 59.78 SS G_CDS: 1.72 Total: 61.50 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -1.25 Total: 3.71 kcal Total: -85.80 -0.24 -86.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570768813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.045 kcal (2) G-P(sol) polarization free energy of solvation -85.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds