Wall clock time and date at job start Sat Apr 11 2020 07:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86795 * 120.00233 * 2 1 4 4 H 1.48504 * 109.47348 * 270.00213 * 3 2 1 5 5 H 1.48507 * 109.47046 * 30.00244 * 3 2 1 6 6 H 1.48502 * 109.47121 * 149.99894 * 3 2 1 7 7 C 1.38796 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99848 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00335 * 180.02562 * 7 2 1 10 10 C 1.80994 * 100.00087 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47013 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99998 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00049 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99908 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47138 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.46930 * 294.99710 * 15 14 13 17 17 C 1.52997 * 109.47143 * 174.99644 * 15 14 13 18 18 O 1.42891 * 109.47221 * 304.99839 * 17 15 14 19 19 N 1.46506 * 109.47035 * 54.99480 * 15 14 13 20 20 C 1.34775 * 119.99693 * 204.99878 * 19 15 14 21 21 O 1.21738 * 120.00312 * 0.02562 * 20 19 15 22 22 C 1.46376 * 119.99642 * 179.97438 * 20 19 15 23 23 C 1.33976 * 119.23453 * 359.73480 * 22 20 19 24 24 O 1.35000 * 121.69007 * 180.12224 * 23 22 20 25 25 C 1.43253 * 116.82857 * 343.31207 * 24 23 22 26 26 C 1.53546 * 108.08474 * 45.25435 * 25 24 23 27 27 O 1.36217 * 119.23055 * 179.97438 * 22 20 19 28 28 H 0.97001 * 119.99526 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47101 * 59.99993 * 10 9 7 30 30 H 1.09000 * 109.47426 * 299.99754 * 10 9 7 31 31 H 0.97006 * 120.00010 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47411 * 60.00005 * 14 13 11 33 33 H 1.09000 * 109.46747 * 299.99993 * 14 13 11 34 34 H 1.09004 * 109.46881 * 65.00322 * 17 15 14 35 35 H 1.09002 * 109.47196 * 184.99837 * 17 15 14 36 36 H 0.96705 * 114.00199 * 179.97438 * 18 17 15 37 37 H 0.97000 * 120.00117 * 25.00230 * 19 15 14 38 38 H 1.08004 * 119.15339 * 0.36682 * 23 22 20 39 39 H 1.08999 * 109.73460 * 285.60789 * 25 24 23 40 40 H 1.08995 * 109.73637 * 164.90790 * 25 24 23 41 41 H 1.08998 * 109.75389 * 182.21506 * 26 25 24 42 42 H 1.09004 * 109.75740 * 61.47772 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4400 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2022 0.0001 10 6 4.0865 -2.9846 -0.0001 11 6 5.5730 -3.2327 -0.0002 12 8 6.3440 -2.2965 0.0003 13 7 6.0456 -4.4949 0.0001 14 6 7.4906 -4.7360 0.0005 15 6 7.7562 -6.2428 0.0002 16 1 7.3913 -6.6763 0.9313 17 6 9.2600 -6.4955 -0.1252 18 8 9.7600 -5.8286 -1.2858 19 7 7.0611 -6.8609 -1.1317 20 6 6.7157 -8.1627 -1.0808 21 8 6.9808 -8.8247 -0.0942 22 6 6.0207 -8.7801 -2.2114 23 6 5.7308 -8.0356 -3.2869 24 8 5.0892 -8.5535 -4.3559 25 6 5.0568 -9.9818 -4.4610 26 6 4.6969 -10.5531 -3.0820 27 8 5.6793 -10.0971 -2.1435 28 1 -0.4849 0.8401 0.0004 29 1 3.6439 -3.4314 -0.8904 30 1 3.6433 -3.4319 0.8896 31 1 5.4289 -5.2437 0.0000 32 1 7.9333 -4.2889 0.8906 33 1 7.9337 -4.2891 -0.8894 34 1 9.7677 -6.1134 0.7605 35 1 9.4422 -7.5664 -0.2147 36 1 10.7093 -5.9452 -1.4281 37 1 6.8495 -6.3333 -1.9177 38 1 6.0212 -6.9955 -3.3006 39 1 6.0354 -10.3505 -4.7683 40 1 4.3044 -10.2801 -5.1910 41 1 4.7031 -11.6424 -3.1215 42 1 3.7098 -10.2004 -2.7832 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572311133.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:05 Heat of formation + Delta-G solvation = -168.390142 kcal Electronic energy + Delta-G solvation = -27805.549648 eV Core-core repulsion = 23492.771502 eV Total energy + Delta-G solvation = -4312.778146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.112 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.54620 -40.19332 -39.15006 -37.72361 -37.21227 -35.57847 -34.00013 -32.64686 -32.44073 -30.84169 -29.46049 -28.61977 -25.85775 -25.78730 -25.43686 -22.96576 -21.34625 -20.50553 -20.02813 -18.97351 -18.74039 -17.91542 -17.85207 -16.86722 -16.69890 -16.47714 -16.06803 -15.60473 -15.32816 -15.22303 -15.06847 -14.95227 -14.78961 -14.62502 -14.32088 -14.02336 -13.72639 -13.69434 -13.32278 -13.01718 -12.79819 -12.71002 -12.40478 -11.96805 -11.64998 -11.48506 -11.27046 -11.15150 -11.01252 -10.62755 -10.49936 -10.22918 -9.86872 -9.64961 -9.52996 -9.06964 -8.99492 -8.64340 -8.51171 -6.92611 -6.29367 -4.01272 0.87207 2.12852 2.65670 2.72987 2.85005 2.93489 3.21171 3.32097 3.34912 3.50147 3.63340 3.81475 3.83843 4.24268 4.32654 4.34952 4.35536 4.43976 4.64238 4.65662 4.74874 4.83379 4.93334 5.02557 5.05809 5.09741 5.18043 5.26865 5.37585 5.45174 5.73762 5.77763 5.95156 5.99935 6.29741 6.42645 6.78048 7.08447 7.21539 7.52691 7.77019 7.93726 8.41284 8.43747 9.16771 10.79902 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.011256 B = 0.002566 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.865670 B =10909.754337 C =12678.614635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.740 5.740 14 C 0.116 3.884 15 C 0.142 3.858 16 H 0.111 0.889 17 C 0.066 3.934 18 O -0.568 6.568 19 N -0.714 5.714 20 C 0.580 3.420 21 O -0.523 6.523 22 C -0.076 4.076 23 C 0.016 3.984 24 O -0.297 6.297 25 C 0.014 3.986 26 C 0.018 3.982 27 O -0.286 6.286 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.399 0.601 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.382 0.618 37 H 0.404 0.596 38 H 0.179 0.821 39 H 0.082 0.918 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.476 -22.455 -7.230 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.276 4.276 11 C 0.317 3.683 12 O -0.390 6.390 13 N -0.395 5.395 14 C -0.008 4.008 15 C 0.037 3.963 16 H 0.129 0.871 17 C -0.013 4.013 18 O -0.373 6.373 19 N -0.369 5.369 20 C 0.367 3.633 21 O -0.400 6.400 22 C -0.125 4.125 23 C -0.051 4.051 24 O -0.209 6.209 25 C -0.062 4.062 26 C -0.058 4.058 27 O -0.200 6.200 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.234 0.766 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.229 0.771 37 H 0.241 0.759 38 H 0.196 0.804 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.133 -21.136 -6.583 27.993 hybrid contribution -0.746 -0.823 -0.435 1.193 sum 16.387 -21.959 -7.018 28.283 Atomic orbital electron populations 1.69944 1.05927 1.27771 1.48068 1.24718 0.94454 0.98982 0.93179 0.86730 0.81895 0.83259 0.79931 1.19199 1.19956 1.15903 1.22317 0.88274 0.97535 1.58783 0.89399 1.84783 1.09279 0.99927 1.97428 1.23284 0.93936 1.04481 1.05851 1.20278 0.90616 0.82140 0.75217 1.90712 1.58738 1.42117 1.47464 1.45979 1.07198 1.08253 1.78058 1.21523 0.82085 0.92810 1.04422 1.21410 0.90989 0.93137 0.90752 0.87075 1.22529 0.93399 0.96811 0.88607 1.86467 1.28861 1.75800 1.46201 1.45813 1.60182 1.09909 1.21011 1.17110 0.78697 0.81690 0.85823 1.90863 1.54362 1.61963 1.32782 1.20267 1.09517 0.87032 0.95650 1.23210 0.97200 0.99100 0.85568 1.86137 1.70579 1.22477 1.41694 1.23768 1.04397 0.79354 0.98661 1.23705 0.92012 1.01700 0.88381 1.86427 1.57266 1.20353 1.55971 0.91936 0.88502 0.88436 0.76646 0.89843 0.89512 0.91973 0.92405 0.77100 0.75882 0.80400 0.89970 0.85862 0.85913 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.70 27.74 -169.99 -4.71 16.99 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 7 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 8 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.52 16 10 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 11 C 0.53 9.05 7.85 -10.98 -0.09 8.96 16 12 O -0.52 -10.76 15.86 5.56 0.09 -10.67 16 13 N -0.74 -8.80 5.39 -60.29 -0.32 -9.12 16 14 C 0.12 1.18 5.12 -4.04 -0.02 1.16 16 15 C 0.14 1.19 2.53 -67.93 -0.17 1.02 16 16 H 0.11 0.98 7.58 -51.93 -0.39 0.59 16 17 C 0.07 0.47 6.85 37.16 0.25 0.73 16 18 O -0.57 -4.06 12.64 -35.23 -0.45 -4.51 16 19 N -0.71 -5.95 4.39 -55.20 -0.24 -6.19 16 20 C 0.58 6.31 7.69 -12.99 -0.10 6.21 16 21 O -0.52 -7.53 16.58 -10.06 -0.17 -7.70 16 22 C -0.08 -0.76 6.61 -37.81 -0.25 -1.01 16 23 C 0.02 0.13 10.58 29.23 0.31 0.44 16 24 O -0.30 -2.45 10.47 -30.82 -0.32 -2.78 16 25 C 0.01 0.07 7.30 37.44 0.27 0.35 16 26 C 0.02 0.11 7.31 37.44 0.27 0.39 16 27 O -0.29 -3.06 10.28 -45.77 -0.47 -3.53 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 31 H 0.40 3.97 8.14 -40.82 -0.33 3.64 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.99 7.39 -51.93 -0.38 0.60 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.38 1.24 9.12 45.56 0.42 1.65 16 37 H 0.40 2.85 6.44 -40.82 -0.26 2.59 16 38 H 0.18 1.05 6.08 -52.48 -0.32 0.73 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -39.01 374.71 -5.91 -44.92 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.66 Total: 4.09 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 0.92 Total: 4.14 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.21 Total: -41.08 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -1.32 Total: -29.18 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.01 -5.91 -44.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572311133.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.475 kcal (2) G-P(sol) polarization free energy of solvation -39.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds