Wall clock time and date at job start Sat Apr 11 2020 07:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00068 * 2 1 4 4 H 1.48499 * 109.47232 * 270.00133 * 3 2 1 5 5 H 1.48500 * 109.46899 * 30.00632 * 3 2 1 6 6 H 1.48504 * 109.46903 * 150.00160 * 3 2 1 7 7 C 1.38815 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00199 * 196.36324 * 7 2 1 9 9 N 1.36941 * 119.99739 * 16.35612 * 7 2 1 10 10 C 1.46966 * 120.59335 * 209.13005 * 9 7 2 11 11 C 1.53371 * 108.63423 * 235.24978 * 10 9 7 12 12 N 1.46968 * 108.63555 * 310.58199 * 11 10 9 13 13 S 1.65597 * 120.58830 * 235.20323 * 12 11 10 14 14 O 1.42102 * 106.40748 * 343.25406 * 13 12 11 15 15 O 1.42105 * 106.40253 * 210.33148 * 13 12 11 16 16 C 1.76205 * 107.21962 * 96.79335 * 13 12 11 17 17 C 1.36132 * 120.17046 * 345.84132 * 16 13 12 18 18 C 1.39327 * 120.98944 * 179.97438 * 17 16 13 19 19 C 1.36131 * 120.98723 * 0.02562 * 18 17 16 20 20 C 1.40499 * 119.65709 * 359.97438 * 19 18 17 21 21 C 1.40546 * 121.29137 * 180.02562 * 20 19 18 22 22 C 1.36095 * 119.65106 * 179.97438 * 21 20 19 23 23 C 1.39380 * 120.99377 * 0.02562 * 22 21 20 24 24 C 1.36088 * 120.99366 * 359.95727 * 23 22 21 25 25 C 1.40502 * 120.17272 * 165.82143 * 16 13 12 26 26 C 1.46962 * 118.81437 * 55.47413 * 12 11 10 27 27 C 1.46968 * 120.59377 * 29.15823 * 9 7 2 28 28 H 0.97001 * 119.99846 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.60759 * 115.51098 * 10 9 7 30 30 H 1.08999 * 109.75043 * 355.07574 * 10 9 7 31 31 H 1.08994 * 109.60984 * 190.83146 * 11 10 9 32 32 H 1.09003 * 109.75286 * 70.40129 * 11 10 9 33 33 H 1.07995 * 119.50690 * 359.97438 * 17 16 13 34 34 H 1.07998 * 119.50661 * 179.97438 * 18 17 16 35 35 H 1.08005 * 120.17025 * 179.70348 * 19 18 17 36 36 H 1.07996 * 120.17314 * 359.93078 * 21 20 19 37 37 H 1.07998 * 119.50011 * 179.97438 * 22 21 20 38 38 H 1.08003 * 119.49871 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.16924 * 180.02562 * 24 23 22 40 40 H 1.09002 * 109.61044 * 64.27141 * 26 12 11 41 41 H 1.09002 * 109.60513 * 184.78322 * 26 12 11 42 42 H 1.08998 * 109.60705 * 244.49216 * 27 9 7 43 43 H 1.09003 * 109.60892 * 5.00110 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0575 -1.2212 0.2629 9 7 1.3671 -2.3639 -0.3350 10 6 1.8033 -3.6493 0.2285 11 6 2.0990 -4.6152 -0.9256 12 7 0.9607 -4.5990 -1.8550 13 16 0.1837 -6.0041 -2.2603 14 8 1.0539 -7.0649 -1.8908 15 8 -0.3057 -5.8250 -3.5824 16 6 -1.2319 -6.1363 -1.2195 17 6 -1.3486 -5.3433 -0.1192 18 6 -2.4607 -5.4332 0.7152 19 6 -3.4628 -6.3171 0.4547 20 6 -3.3777 -7.1522 -0.6720 21 6 -4.3925 -8.0765 -0.9738 22 6 -4.2760 -8.8689 -2.0741 23 6 -3.1634 -8.7789 -2.9088 24 6 -2.1615 -7.8955 -2.6483 25 6 -2.2464 -7.0605 -1.5211 26 6 0.5281 -3.3144 -2.4228 27 6 0.2288 -2.3478 -1.2644 28 1 -0.4850 0.8401 0.0004 29 1 1.0128 -4.0605 0.8562 30 1 2.7048 -3.5036 0.8237 31 1 2.2367 -5.6227 -0.5332 32 1 3.0021 -4.2995 -1.4480 33 1 -0.5674 -4.6339 0.1104 34 1 -2.5285 -4.7928 1.5822 35 1 -4.3167 -6.3790 1.1131 36 1 -5.2598 -8.1581 -0.3355 37 1 -5.0570 -9.5786 -2.3035 38 1 -3.0956 -9.4197 -3.7755 39 1 -1.3056 -7.8367 -3.3043 40 1 1.3213 -2.9053 -3.0485 41 1 -0.3721 -3.4627 -3.0193 42 1 -0.6738 -2.6664 -0.7429 43 1 0.0911 -1.3402 -1.6568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083989639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:07 Heat of formation + Delta-G solvation = 11.580950 kcal Electronic energy + Delta-G solvation = -28956.240797 eV Core-core repulsion = 25094.408797 eV Total energy + Delta-G solvation = -3861.831999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.45000 -37.82563 -37.00116 -36.58262 -35.67663 -33.91566 -33.03514 -31.19222 -30.46942 -30.23473 -29.45517 -26.49211 -23.82327 -23.46331 -23.05838 -22.95873 -22.57257 -20.15402 -18.71012 -17.95582 -17.56599 -17.37533 -16.60229 -16.07734 -15.82547 -15.71327 -14.87865 -14.58619 -14.21556 -14.18375 -13.80933 -13.76829 -13.68330 -13.67656 -13.48026 -13.07518 -12.90264 -12.45955 -12.16673 -12.04515 -11.91501 -11.64908 -11.57302 -11.42223 -11.20121 -11.15031 -10.87200 -10.81878 -10.49289 -10.46959 -10.30346 -10.26232 -10.02827 -9.78226 -8.86378 -8.74300 -8.55071 -8.25457 -6.76797 -5.90512 -3.36079 0.15760 0.60704 0.89679 1.71713 2.80063 3.07399 3.32077 3.39952 3.40165 3.80304 3.87424 4.39841 4.48665 4.62004 4.68813 4.77370 4.86431 4.93283 5.04295 5.16499 5.23589 5.26772 5.33873 5.41153 5.44806 5.69099 5.70293 5.82541 5.86451 5.94714 5.98101 6.08154 6.15083 6.21197 6.26626 6.31475 6.34524 6.36859 6.53417 6.59709 6.71719 6.82634 6.84100 7.16528 7.47016 7.69407 8.31464 9.07223 9.69377 10.25914 11.17145 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.018154 B = 0.003610 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.967597 B = 7755.094326 C = 8536.534865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.128 3.872 11 C 0.098 3.902 12 N -0.987 5.987 13 S 2.688 3.312 14 O -0.962 6.962 15 O -0.959 6.959 16 C -0.666 4.666 17 C 0.003 3.997 18 C -0.135 4.135 19 C -0.056 4.056 20 C -0.072 4.072 21 C -0.094 4.094 22 C -0.127 4.127 23 C -0.093 4.093 24 C -0.133 4.133 25 C 0.029 3.971 26 C 0.093 3.907 27 C 0.155 3.845 28 H 0.255 0.745 29 H 0.022 0.978 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.025 0.975 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 -14.642 -1.359 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.310 5.310 10 C 0.000 4.000 11 C -0.029 4.029 12 N -0.828 5.828 13 S 2.778 3.222 14 O -0.952 6.952 15 O -0.949 6.949 16 C -0.751 4.751 17 C -0.015 4.015 18 C -0.154 4.154 19 C -0.074 4.074 20 C -0.073 4.073 21 C -0.112 4.112 22 C -0.145 4.145 23 C -0.111 4.111 24 C -0.151 4.151 25 C 0.027 3.973 26 C -0.033 4.033 27 C 0.027 3.973 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.043 0.957 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.086 -15.074 -1.967 16.772 hybrid contribution -0.204 1.198 0.595 1.353 sum -7.289 -13.876 -1.372 15.734 Atomic orbital electron populations 1.69991 1.05288 1.25775 1.53523 1.25075 0.95312 0.98523 1.00430 0.86258 0.79093 0.83419 0.77760 1.21346 1.21780 1.20406 1.19203 0.92468 0.84480 1.42407 0.91441 1.43898 1.36293 1.01729 1.49079 1.21366 0.98542 0.87459 0.92591 1.22179 0.87908 1.00858 0.91969 1.57382 1.43250 1.22344 1.59796 1.02186 0.73271 0.72753 0.73989 1.93568 1.64046 1.53312 1.84267 1.93574 1.81457 1.85701 1.34172 1.30976 1.20993 1.07941 1.15154 1.21201 0.97359 0.92934 0.90041 1.21077 0.94199 0.99454 1.00647 1.21312 0.98099 0.93116 0.94823 1.18123 0.94911 0.98165 0.96124 1.21056 0.97682 0.94963 0.97490 1.20867 0.98288 0.99979 0.95327 1.20858 0.93360 0.97636 0.99274 1.21235 1.00671 0.96645 0.96586 1.17283 0.92560 0.93434 0.94000 1.22502 0.99595 0.83193 0.98003 1.21329 0.89060 0.98696 0.88190 0.93456 0.96022 0.91102 0.89803 0.90741 0.83237 0.84603 0.84820 0.85213 0.85568 0.85313 0.85507 0.90966 0.90559 0.95679 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.40 11.20 55.49 0.62 -23.78 16 2 C 0.01 0.15 4.93 -17.43 -0.09 0.06 16 3 Si 0.90 20.62 29.58 -169.99 -5.03 15.59 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.26 -6.48 9.58 -15.06 -0.14 -6.63 16 8 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 9 N -0.59 -13.32 2.96 -171.77 -0.51 -13.83 16 10 C 0.13 2.39 6.19 -3.60 -0.02 2.37 16 11 C 0.10 1.62 6.54 -3.59 -0.02 1.60 16 12 N -0.99 -17.13 2.26 -113.01 -0.26 -17.38 16 13 S 2.69 46.83 4.59 -107.50 -0.49 46.34 16 14 O -0.96 -18.01 16.52 -57.17 -0.94 -18.96 16 15 O -0.96 -18.12 15.33 -57.17 -0.88 -19.00 16 16 C -0.67 -11.04 5.83 -39.49 -0.23 -11.27 16 17 C 0.00 0.05 9.38 -39.93 -0.37 -0.32 16 18 C -0.14 -1.82 9.95 -39.93 -0.40 -2.22 16 19 C -0.06 -0.67 9.77 -39.49 -0.39 -1.06 16 20 C -0.07 -0.98 5.74 -106.83 -0.61 -1.60 16 21 C -0.09 -1.01 9.77 -39.48 -0.39 -1.39 16 22 C -0.13 -1.28 9.95 -39.93 -0.40 -1.68 16 23 C -0.09 -1.09 9.95 -39.93 -0.40 -1.48 16 24 C -0.13 -1.98 9.10 -39.49 -0.36 -2.34 16 25 C 0.03 0.45 5.74 -106.83 -0.61 -0.16 16 26 C 0.09 1.71 6.55 -3.37 -0.02 1.69 16 27 C 0.15 3.34 5.25 -3.37 -0.02 3.32 16 28 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 29 H 0.02 0.40 6.33 -51.93 -0.33 0.07 16 30 H 0.07 1.26 7.94 -51.93 -0.41 0.85 16 31 H 0.08 1.25 6.91 -51.93 -0.36 0.89 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.15 2.44 3.67 -52.49 -0.19 2.25 16 34 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.13 1.92 5.98 -52.49 -0.31 1.61 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.08 1.31 7.28 -51.93 -0.38 0.93 16 42 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 43 H 0.10 2.46 6.03 -51.93 -0.31 2.15 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -31.52 352.08 -11.83 -43.35 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.18 Total: 3.47 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: -4.47 Total: -21.10 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.14 Total: -54.99 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -1.82 Total: -37.95 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Atomic # 16 Polarization: 46.83 SS G_CDS: -0.49 Total: 46.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.52 -11.83 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083989639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.928 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds