Wall clock time and date at job start Sat Apr 11 2020 07:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86803 * 120.00137 * 2 1 4 4 H 1.48491 * 109.47297 * 240.00284 * 3 2 1 5 5 H 1.48502 * 109.46920 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46734 * 119.99847 * 3 2 1 7 7 C 1.38815 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99765 * 198.32784 * 7 2 1 9 9 N 1.36934 * 120.00061 * 18.32803 * 7 2 1 10 10 C 1.46964 * 120.59572 * 213.35893 * 9 7 2 11 11 C 1.53374 * 108.63483 * 235.24965 * 10 9 7 12 12 N 1.46959 * 108.63060 * 310.57314 * 11 10 9 13 13 C 1.34786 * 120.59466 * 235.20093 * 12 11 10 14 14 O 1.21567 * 119.99236 * 5.93271 * 13 12 11 15 15 C 1.47719 * 120.00490 * 185.92541 * 13 12 11 16 16 C 1.39672 * 120.11520 * 42.87672 * 15 13 12 17 17 C 1.37813 * 119.88387 * 179.97438 * 16 15 13 18 18 C 1.38677 * 120.11239 * 0.02562 * 17 16 15 19 19 F 1.35103 * 119.87762 * 179.97438 * 18 17 16 20 20 C 1.38629 * 120.24509 * 0.02562 * 18 17 16 21 21 C 1.50694 * 119.94706 * 180.02562 * 20 18 17 22 22 F 1.39897 * 109.47501 * 180.02562 * 21 20 18 23 23 F 1.39901 * 109.47248 * 300.00063 * 21 20 18 24 24 F 1.39901 * 109.47324 * 59.99788 * 21 20 18 25 25 C 1.37867 * 120.11728 * 359.97438 * 20 18 17 26 26 C 1.46966 * 118.81843 * 55.47624 * 12 11 10 27 27 C 1.46963 * 120.59554 * 33.37592 * 9 7 2 28 28 H 0.96993 * 119.99745 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.61749 * 115.49926 * 10 9 7 30 30 H 1.09006 * 109.74944 * 355.06857 * 10 9 7 31 31 H 1.09002 * 109.61213 * 190.82662 * 11 10 9 32 32 H 1.09005 * 109.75055 * 70.39366 * 11 10 9 33 33 H 1.08006 * 120.06011 * 0.02562 * 16 15 13 34 34 H 1.07996 * 119.94672 * 180.27611 * 17 16 15 35 35 H 1.07996 * 120.05973 * 180.02562 * 25 20 18 36 36 H 1.09006 * 109.60612 * 64.26523 * 26 12 11 37 37 H 1.09001 * 109.61380 * 184.77548 * 26 12 11 38 38 H 1.08997 * 109.61105 * 244.49774 * 27 9 7 39 39 H 1.09002 * 109.60894 * 5.00682 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0492 -1.2260 0.2936 9 7 1.3777 -2.3578 -0.3740 10 6 1.7346 -3.6405 0.2482 11 6 2.1159 -4.6324 -0.8577 12 7 1.0682 -4.6122 -1.8882 13 6 0.4462 -5.7498 -2.2564 14 8 0.6720 -6.7858 -1.6618 15 6 -0.5099 -5.7377 -3.3824 16 6 -0.2097 -5.0310 -4.5491 17 6 -1.1049 -5.0234 -5.5969 18 6 -2.3022 -5.7154 -5.4940 19 9 -3.1766 -5.7043 -6.5239 20 6 -2.6058 -6.4176 -4.3379 21 6 -3.9086 -7.1678 -4.2336 22 9 -3.9884 -7.7923 -2.9843 23 9 -4.9746 -6.2731 -4.3761 24 9 -3.9726 -8.1339 -5.2434 25 6 -1.7174 -6.4319 -3.2838 26 6 0.7151 -3.3304 -2.5143 27 6 0.3300 -2.3377 -1.4044 28 1 -0.4849 0.8400 0.0004 29 1 0.8819 -4.0259 0.8072 30 1 2.5803 -3.5007 0.9216 31 1 2.1969 -5.6351 -0.4380 32 1 3.0693 -4.3427 -1.2997 33 1 0.7228 -4.4920 -4.6304 34 1 -0.8718 -4.4809 -6.5012 35 1 -1.9546 -6.9796 -2.3838 36 1 1.5705 -2.9472 -3.0708 37 1 -0.1291 -3.4730 -3.1889 38 1 -0.6227 -2.6302 -0.9631 39 1 0.2490 -1.3350 -1.8242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103882120.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:14 Heat of formation + Delta-G solvation = -180.371320 kcal Electronic energy + Delta-G solvation = -30801.436185 eV Core-core repulsion = 25823.210594 eV Total energy + Delta-G solvation = -4978.225591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.39592 -50.30354 -48.83369 -48.80092 -41.69795 -39.72014 -38.40165 -35.69964 -33.86543 -33.04995 -32.29137 -31.61598 -28.76260 -27.36561 -25.99171 -24.86518 -24.22546 -23.70342 -22.25323 -20.77633 -19.70808 -19.68780 -19.62083 -18.91594 -18.42470 -17.91054 -17.23574 -17.14756 -16.93967 -16.62102 -16.17131 -15.79707 -15.65933 -15.50854 -15.41755 -15.40600 -15.22877 -15.21199 -14.95601 -14.95421 -14.89262 -14.56408 -14.15392 -14.04394 -13.66166 -13.60682 -13.30942 -13.12066 -12.61357 -12.55851 -12.44955 -12.24584 -12.03751 -11.95996 -11.67195 -11.10558 -10.61226 -10.55454 -10.14694 -9.86033 -8.60952 -7.89132 -5.41402 -0.67528 -0.30520 1.31903 1.45498 1.51756 1.52866 1.59870 1.83302 2.22151 2.43367 2.52491 2.63097 2.83191 3.18145 3.24772 3.28663 3.43671 3.59537 3.74379 3.89965 4.14270 4.22478 4.26055 4.37525 4.50581 4.52634 4.56857 4.65316 4.70330 4.77027 4.81656 4.90251 5.07213 5.19793 5.33478 5.49553 5.55131 5.67095 6.34691 6.38394 6.97323 7.12047 7.77972 8.34814 9.15569 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.016103 B = 0.002945 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.429212 B = 9504.626184 C =10069.835791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.037 4.037 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.279 1.279 7 C -0.273 4.273 8 H 0.068 0.932 9 N -0.606 5.606 10 C 0.130 3.870 11 C 0.107 3.893 12 N -0.590 5.590 13 C 0.557 3.443 14 O -0.576 6.576 15 C -0.145 4.145 16 C -0.016 4.016 17 C -0.138 4.138 18 C 0.165 3.835 19 F -0.122 7.122 20 C -0.235 4.235 21 C 0.515 3.485 22 F -0.174 7.174 23 F -0.175 7.175 24 F -0.173 7.173 25 C -0.001 4.001 26 C 0.088 3.912 27 C 0.165 3.835 28 H 0.252 0.748 29 H 0.004 0.996 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.177 0.823 34 H 0.194 0.806 35 H 0.148 0.852 36 H 0.090 0.910 37 H 0.105 0.895 38 H -0.005 1.005 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.706 -10.979 -14.541 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.233 4.233 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.223 1.223 6 H -0.205 1.205 7 C -0.402 4.402 8 H 0.085 0.915 9 N -0.329 5.329 10 C 0.004 3.996 11 C -0.017 4.017 12 N -0.321 5.321 13 C 0.346 3.654 14 O -0.457 6.457 15 C -0.149 4.149 16 C -0.035 4.035 17 C -0.156 4.156 18 C 0.145 3.855 19 F -0.100 7.100 20 C -0.238 4.238 21 C 0.461 3.539 22 F -0.155 7.155 23 F -0.156 7.156 24 F -0.154 7.154 25 C -0.020 4.020 26 C -0.035 4.035 27 C 0.039 3.961 28 H 0.061 0.939 29 H 0.022 0.978 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.194 0.806 34 H 0.211 0.789 35 H 0.166 0.834 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.014 0.986 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.751 -11.376 -14.231 18.425 hybrid contribution -0.505 0.773 0.536 1.067 sum -3.255 -10.603 -13.695 17.623 Atomic orbital electron populations 1.70183 1.06842 1.26305 1.54109 1.25887 0.95808 1.01628 1.00023 0.85390 0.77636 0.79128 0.78515 1.19694 1.22321 1.20511 1.19412 0.93233 0.85746 1.41851 0.91461 1.44191 1.43743 1.03022 1.41961 1.21375 0.98038 0.86386 0.93817 1.22108 0.89936 1.00406 0.89248 1.48026 1.37609 1.07368 1.39090 1.18414 0.80498 0.83179 0.83326 1.90757 1.65810 1.32639 1.56488 1.19828 0.95780 1.02874 0.96393 1.21809 1.00137 0.91985 0.89532 1.21468 0.90998 1.00819 1.02301 1.17677 0.89011 0.95922 0.82909 1.91594 1.67824 1.94376 1.56214 1.19912 0.97081 1.08556 0.98207 1.17987 0.84472 0.77501 0.73916 1.93195 1.96609 1.83437 1.42254 1.93239 1.59120 1.67842 1.95429 1.93232 1.96756 1.64828 1.60627 1.20828 0.90588 0.93453 0.97174 1.22898 1.01997 0.82395 0.96209 1.21009 0.89181 0.97572 0.88342 0.93897 0.97821 0.90809 0.89362 0.89829 0.80599 0.78879 0.83429 0.89161 0.87676 0.98643 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.80 11.66 21.65 0.25 -51.55 16 2 C -0.04 -1.89 4.84 84.86 0.41 -1.48 16 3 Si 0.97 41.62 29.59 68.60 2.03 43.65 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.30 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.27 -13.83 9.51 84.03 0.80 -13.03 16 8 H 0.07 3.32 7.89 -2.91 -0.02 3.30 16 9 N -0.61 -27.95 2.93 -697.35 -2.05 -29.99 16 10 C 0.13 5.15 6.67 86.42 0.58 5.73 16 11 C 0.11 3.44 6.60 86.42 0.57 4.01 16 12 N -0.59 -18.25 2.94 -820.68 -2.41 -20.66 16 13 C 0.56 17.03 7.28 86.75 0.63 17.66 16 14 O -0.58 -21.24 16.37 -3.93 -0.06 -21.30 16 15 C -0.15 -3.45 5.05 -20.09 -0.10 -3.55 16 16 C -0.02 -0.27 7.38 22.52 0.17 -0.10 16 17 C -0.14 -1.86 10.01 22.27 0.22 -1.63 16 18 C 0.16 3.05 7.14 22.47 0.16 3.21 16 19 F -0.12 -2.36 16.44 44.97 0.74 -1.62 16 20 C -0.24 -5.12 5.37 -19.86 -0.11 -5.22 16 21 C 0.52 11.74 3.02 71.23 0.22 11.95 16 22 F -0.17 -4.11 15.96 44.97 0.72 -3.40 16 23 F -0.18 -4.17 17.04 44.97 0.77 -3.40 16 24 F -0.17 -3.92 17.05 44.97 0.77 -3.15 16 25 C 0.00 -0.03 9.04 22.52 0.20 0.17 16 26 C 0.09 2.59 5.22 86.56 0.45 3.04 16 27 C 0.17 7.00 5.51 86.56 0.48 7.47 16 28 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.07 2.79 7.94 -2.38 -0.02 2.77 16 31 H 0.09 2.81 6.99 -2.39 -0.02 2.79 16 32 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.18 2.09 6.84 -2.91 -0.02 2.07 16 34 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.15 3.68 7.15 -2.91 -0.02 3.65 16 36 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.11 2.47 4.77 -2.39 -0.01 2.46 16 38 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.07 3.14 6.43 -2.39 -0.02 3.13 16 Total: -1.00 -64.73 340.90 6.55 -58.19 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: 1.12 Total: 5.02 kcal Atomic # 6 Polarization: 23.54 SS G_CDS: 4.68 Total: 28.22 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -4.21 Total: -102.20 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 9 Polarization: -14.56 SS G_CDS: 2.99 Total: -11.57 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -64.73 6.55 -58.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103882120.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.186 kcal (2) G-P(sol) polarization free energy of solvation -64.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds