Wall clock time and date at job start Sat Apr 11 2020 07:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36693 * 126.60011 * 2 1 4 4 C 1.47382 * 125.77711 * 0.24509 * 3 2 1 5 5 O 1.21511 * 119.99926 * 359.72038 * 4 3 2 6 6 O 1.34754 * 119.99634 * 179.71656 * 4 3 2 7 7 C 1.45200 * 116.99479 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47153 * 30.00170 * 7 6 4 9 9 C 1.52996 * 109.47193 * 269.99959 * 7 6 4 10 10 C 1.50700 * 109.46765 * 150.00137 * 7 6 4 11 11 H 1.07998 * 120.00453 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00059 * 180.02562 * 10 7 6 13 13 N 1.31515 * 120.00016 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 120.00539 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46904 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47564 * 119.99202 * 14 12 10 17 17 H 1.48503 * 109.47231 * 239.99712 * 14 12 10 18 18 N 1.34452 * 108.44396 * 179.97438 * 3 2 1 19 19 N 1.28747 * 109.57075 * 359.97438 * 18 3 2 20 20 N 1.35035 * 126.60812 * 179.97438 * 2 1 3 21 21 C 1.40226 * 126.60513 * 0.03820 * 20 2 1 22 22 C 1.38853 * 120.06619 * 42.00766 * 21 20 2 23 23 C 1.38094 * 119.93212 * 179.97438 * 22 21 20 24 24 C 1.38301 * 120.07003 * 359.97438 * 23 22 21 25 25 C 1.38266 * 120.12819 * 0.02562 * 24 23 22 26 26 N 1.48012 * 119.96284 * 180.02562 * 25 24 23 27 27 O 1.21800 * 120.00479 * 0.02562 * 26 25 24 28 28 O 1.21805 * 120.00027 * 180.02562 * 26 25 24 29 29 C 1.38142 * 120.06594 * 359.74796 * 25 24 23 30 30 H 1.08994 * 109.47452 * 84.62402 * 1 2 3 31 31 H 1.09008 * 109.46732 * 204.62337 * 1 2 3 32 32 H 1.08998 * 109.47645 * 324.61787 * 1 2 3 33 33 H 1.09008 * 109.46942 * 300.00229 * 9 7 6 34 34 H 1.08997 * 109.47540 * 59.99905 * 9 7 6 35 35 H 1.08999 * 109.47547 * 180.02562 * 9 7 6 36 36 H 0.97002 * 120.00844 * 180.02562 * 13 12 10 37 37 H 1.07998 * 120.03022 * 359.97438 * 22 21 20 38 38 H 1.08003 * 119.96563 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.93892 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.03220 * 180.27015 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0974 0.0000 4 6 1.8758 2.5020 0.0051 5 8 0.6890 2.7625 0.0047 6 8 2.7841 3.4974 0.0103 7 6 2.2727 4.8564 0.0157 8 1 1.3113 4.8807 0.5288 9 6 2.0944 5.3400 -1.4248 10 6 3.2468 5.7567 0.7310 11 1 4.1587 5.3485 1.1409 12 6 2.9732 7.1016 0.8630 13 7 1.8625 7.5988 0.3644 14 14 4.1808 8.2179 1.7489 15 1 5.3440 7.4197 2.2128 16 1 4.6469 9.2790 0.8205 17 1 3.5115 8.8423 2.9183 18 7 3.5996 0.6784 0.0006 19 7 3.6314 -0.6086 0.0015 20 7 2.3123 -1.0840 0.0005 21 6 1.9073 -2.4265 0.0003 22 6 0.8519 -2.8346 -0.8044 23 6 0.4557 -4.1575 -0.8028 24 6 1.1093 -5.0756 -0.0011 25 6 2.1605 -4.6722 0.8013 26 7 2.8577 -5.6579 1.6574 27 8 2.5057 -6.8240 1.6545 28 8 3.7836 -5.3031 2.3649 29 6 2.5644 -3.3511 0.8004 30 1 -0.3634 0.0963 -1.0231 31 1 -0.3633 -0.9343 0.4282 32 1 -0.3634 0.8378 0.5950 33 1 3.0559 5.3156 -1.9378 34 1 1.3900 4.6887 -1.9422 35 1 1.7109 6.3602 -1.4208 36 1 1.6701 8.5450 0.4569 37 1 0.3415 -2.1182 -1.4310 38 1 -0.3648 -4.4757 -1.4289 39 1 0.7979 -6.1098 -0.0018 40 1 3.3884 -3.0374 1.4241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113694927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:27 Heat of formation + Delta-G solvation = 44.163931 kcal Electronic energy + Delta-G solvation = -28897.613721 eV Core-core repulsion = 24490.901411 eV Total energy + Delta-G solvation = -4406.712310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.91540 -42.59573 -40.21816 -39.33233 -37.05110 -35.91734 -35.48197 -33.28370 -33.08188 -32.57009 -30.76415 -29.64377 -28.26689 -27.23872 -25.35174 -24.86219 -24.23083 -23.17480 -21.94932 -21.20323 -20.07465 -19.65309 -19.11498 -18.02274 -17.95456 -17.46728 -16.88626 -16.79535 -16.32840 -15.91017 -15.52091 -15.06502 -14.86289 -14.65177 -14.46046 -14.10776 -13.58444 -13.44454 -13.16473 -13.00988 -12.76991 -12.34706 -12.25810 -12.04690 -11.92337 -11.75499 -11.61647 -11.58660 -11.30990 -11.22213 -11.09778 -10.86884 -10.46049 -10.38460 -10.30518 -10.00877 -9.83785 -9.62773 -9.35952 -8.93765 -8.51716 -6.20658 -4.26756 -0.86747 -0.23851 0.60930 0.71700 0.94587 1.42938 1.57468 2.37501 3.23607 3.25284 3.32146 3.34476 3.41130 3.56809 3.65615 3.76724 3.83922 3.98941 4.10766 4.24265 4.31609 4.56593 4.62174 4.80182 4.92452 5.03506 5.07391 5.12921 5.18108 5.21794 5.31414 5.59694 5.79471 5.83269 6.09934 6.56393 6.84025 6.84696 7.03774 7.11484 7.51868 7.64385 7.67145 7.86400 8.09181 8.50230 8.84317 9.38561 10.86947 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.023014 B = 0.002112 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.334807 B =13252.435138 C =14083.798243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.130 3.870 3 C -0.063 4.063 4 C 0.543 3.457 5 O -0.511 6.511 6 O -0.332 6.332 7 C 0.215 3.785 8 H 0.050 0.950 9 C -0.155 4.155 10 C -0.519 4.519 11 H 0.071 0.929 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.912 3.088 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.157 5.157 19 N -0.057 5.057 20 N -0.335 5.335 21 C 0.147 3.853 22 C -0.067 4.067 23 C -0.094 4.094 24 C -0.048 4.048 25 C -0.027 4.027 26 N 0.026 4.974 27 O -0.149 6.149 28 O -0.147 6.147 29 C -0.039 4.039 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.038 0.962 34 H 0.016 0.984 35 H 0.101 0.899 36 H 0.266 0.734 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 -25.579 -3.732 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.003 4.003 3 C -0.199 4.199 4 C 0.385 3.615 5 O -0.401 6.401 6 O -0.246 6.246 7 C 0.163 3.837 8 H 0.067 0.933 9 C -0.213 4.213 10 C -0.557 4.557 11 H 0.090 0.910 12 C -0.140 4.140 13 N -0.528 5.528 14 Si 0.739 3.261 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.032 5.032 19 N -0.035 5.035 20 N -0.116 5.116 21 C 0.054 3.946 22 C -0.087 4.087 23 C -0.113 4.113 24 C -0.068 4.068 25 C -0.111 4.111 26 N 0.548 4.452 27 O -0.366 6.366 28 O -0.365 6.365 29 C -0.060 4.060 30 H 0.119 0.881 31 H 0.095 0.905 32 H 0.136 0.864 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.174 0.826 38 H 0.182 0.818 39 H 0.182 0.818 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.585 -25.075 -4.159 26.257 hybrid contribution -0.151 0.642 0.599 0.891 sum -6.736 -24.434 -3.560 25.594 Atomic orbital electron populations 1.20888 0.83971 1.05399 1.05606 1.21977 0.96289 0.85309 0.96697 1.20512 0.88600 0.93771 1.17009 1.19237 0.84512 0.84331 0.73442 1.90782 1.17486 1.84272 1.47545 1.86663 1.38782 1.18529 1.80662 1.20781 0.96673 0.71277 0.94984 0.93263 1.22178 0.99084 1.03667 0.96379 1.21072 1.06346 0.92154 1.36113 0.91040 1.24877 0.95885 0.97601 0.95606 1.69898 1.23997 1.13998 1.44931 0.86204 0.80730 0.80025 0.79130 1.19376 1.20691 1.20760 1.74828 1.18863 1.02658 1.06803 1.82276 0.94118 1.03927 1.23228 1.47437 1.07691 1.03811 1.52620 1.17032 0.97653 0.80842 0.99076 1.21706 0.94349 0.97666 0.95025 1.21136 1.00435 0.90987 0.98763 1.21289 0.91210 1.02754 0.91517 1.20831 1.00076 0.89276 1.00889 1.43477 1.00127 1.01598 0.99997 1.94556 1.69224 1.01493 1.71351 1.94618 1.19717 1.84595 1.37566 1.20804 0.99411 0.89802 0.95967 0.88142 0.90496 0.86354 0.94253 0.96464 0.88054 0.92440 0.82578 0.81848 0.81847 0.81461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 8.19 36.01 0.29 -0.56 16 2 C 0.13 1.64 6.84 -81.74 -0.56 1.08 16 3 C -0.06 -1.09 7.02 -83.56 -0.59 -1.68 16 4 C 0.54 11.32 7.93 34.45 0.27 11.59 16 5 O -0.51 -10.80 14.11 -19.27 -0.27 -11.07 16 6 O -0.33 -8.09 9.87 -40.64 -0.40 -8.49 16 7 C 0.21 5.70 2.56 -27.89 -0.07 5.63 16 8 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 9 C -0.16 -3.87 9.33 37.16 0.35 -3.52 16 10 C -0.52 -14.58 8.90 -34.44 -0.31 -14.89 16 11 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 12 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 13 N -0.89 -24.91 11.32 55.43 0.63 -24.28 16 14 Si 0.91 21.14 29.54 -169.99 -5.02 16.11 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 N -0.16 -2.82 12.39 32.84 0.41 -2.42 16 19 N -0.06 -0.87 13.64 60.35 0.82 -0.05 16 20 N -0.33 -3.92 3.71 -6.71 -0.02 -3.95 16 21 C 0.15 1.19 6.13 -83.58 -0.51 0.68 16 22 C -0.07 -0.30 8.37 -39.41 -0.33 -0.63 16 23 C -0.09 -0.23 10.04 -39.61 -0.40 -0.63 16 24 C -0.05 -0.20 9.55 -39.55 -0.38 -0.58 16 25 C -0.03 -0.21 6.85 -79.98 -0.55 -0.75 16 26 N 0.03 0.26 4.45 33.95 0.15 0.41 16 27 O -0.15 -1.51 18.44 -29.46 -0.54 -2.05 16 28 O -0.15 -1.73 18.45 -29.46 -0.54 -2.27 16 29 C -0.04 -0.32 9.37 -39.41 -0.37 -0.69 16 30 H 0.10 0.67 8.12 -51.93 -0.42 0.25 16 31 H 0.08 0.41 6.98 -51.92 -0.36 0.05 16 32 H 0.12 1.26 6.73 -51.93 -0.35 0.91 16 33 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.10 2.68 6.07 -51.93 -0.32 2.36 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.16 0.43 7.02 -52.49 -0.37 0.07 16 38 H 0.16 -0.16 8.06 -52.48 -0.42 -0.58 16 39 H 0.16 0.39 7.60 -52.49 -0.40 -0.01 16 40 H 0.17 1.56 7.61 -52.49 -0.40 1.16 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -33.44 361.38 -6.39 -39.83 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -3.80 Total: -3.87 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -3.24 Total: -3.35 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 1.98 Total: -30.28 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -1.76 Total: -23.89 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.44 -6.39 -39.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.994 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds