Wall clock time and date at job start Sat Apr 11 2020 07:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36693 * 126.60011 * 2 1 4 4 C 1.47382 * 125.77711 * 0.24509 * 3 2 1 5 5 O 1.21511 * 119.99926 * 359.72038 * 4 3 2 6 6 O 1.34754 * 119.99634 * 179.71656 * 4 3 2 7 7 C 1.45200 * 116.99479 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47153 * 30.00170 * 7 6 4 9 9 C 1.52996 * 109.47193 * 269.99959 * 7 6 4 10 10 C 1.50700 * 109.46765 * 150.00137 * 7 6 4 11 11 H 1.07998 * 120.00453 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00059 * 180.02562 * 10 7 6 13 13 N 1.31515 * 120.00016 * 359.97438 * 12 10 7 14 14 Si 1.86795 * 120.00539 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.46904 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47564 * 119.99202 * 14 12 10 17 17 H 1.48503 * 109.47231 * 239.99712 * 14 12 10 18 18 N 1.34452 * 108.44396 * 179.97438 * 3 2 1 19 19 N 1.28747 * 109.57075 * 359.97438 * 18 3 2 20 20 N 1.35035 * 126.60812 * 179.97438 * 2 1 3 21 21 C 1.40226 * 126.60513 * 0.03820 * 20 2 1 22 22 C 1.38853 * 120.06619 * 42.00766 * 21 20 2 23 23 C 1.38094 * 119.93212 * 179.97438 * 22 21 20 24 24 C 1.38301 * 120.07003 * 359.97438 * 23 22 21 25 25 C 1.38266 * 120.12819 * 0.02562 * 24 23 22 26 26 N 1.48012 * 119.96284 * 180.02562 * 25 24 23 27 27 O 1.21800 * 120.00479 * 0.02562 * 26 25 24 28 28 O 1.21805 * 120.00027 * 180.02562 * 26 25 24 29 29 C 1.38142 * 120.06594 * 359.74796 * 25 24 23 30 30 H 1.08994 * 109.47452 * 84.62402 * 1 2 3 31 31 H 1.09008 * 109.46732 * 204.62337 * 1 2 3 32 32 H 1.08998 * 109.47645 * 324.61787 * 1 2 3 33 33 H 1.09008 * 109.46942 * 300.00229 * 9 7 6 34 34 H 1.08997 * 109.47540 * 59.99905 * 9 7 6 35 35 H 1.08999 * 109.47547 * 180.02562 * 9 7 6 36 36 H 0.97002 * 120.00844 * 180.02562 * 13 12 10 37 37 H 1.07998 * 120.03022 * 359.97438 * 22 21 20 38 38 H 1.08003 * 119.96563 * 180.02562 * 23 22 21 39 39 H 1.07998 * 119.93892 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.03220 * 180.27015 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3220 1.0974 0.0000 4 6 1.8758 2.5020 0.0051 5 8 0.6890 2.7625 0.0047 6 8 2.7841 3.4974 0.0103 7 6 2.2727 4.8564 0.0157 8 1 1.3113 4.8807 0.5288 9 6 2.0944 5.3400 -1.4248 10 6 3.2468 5.7567 0.7310 11 1 4.1587 5.3485 1.1409 12 6 2.9732 7.1016 0.8630 13 7 1.8625 7.5988 0.3644 14 14 4.1808 8.2179 1.7489 15 1 5.3440 7.4197 2.2128 16 1 4.6469 9.2790 0.8205 17 1 3.5115 8.8423 2.9183 18 7 3.5996 0.6784 0.0006 19 7 3.6314 -0.6086 0.0015 20 7 2.3123 -1.0840 0.0005 21 6 1.9073 -2.4265 0.0003 22 6 0.8519 -2.8346 -0.8044 23 6 0.4557 -4.1575 -0.8028 24 6 1.1093 -5.0756 -0.0011 25 6 2.1605 -4.6722 0.8013 26 7 2.8577 -5.6579 1.6574 27 8 2.5057 -6.8240 1.6545 28 8 3.7836 -5.3031 2.3649 29 6 2.5644 -3.3511 0.8004 30 1 -0.3634 0.0963 -1.0231 31 1 -0.3633 -0.9343 0.4282 32 1 -0.3634 0.8378 0.5950 33 1 3.0559 5.3156 -1.9378 34 1 1.3900 4.6887 -1.9422 35 1 1.7109 6.3602 -1.4208 36 1 1.6701 8.5450 0.4569 37 1 0.3415 -2.1182 -1.4310 38 1 -0.3648 -4.4757 -1.4289 39 1 0.7979 -6.1098 -0.0018 40 1 3.3884 -3.0374 1.4241 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113694927.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:26 Heat of formation + Delta-G solvation = 23.750922 kcal Electronic energy + Delta-G solvation = -28898.498896 eV Core-core repulsion = 24490.901411 eV Total energy + Delta-G solvation = -4407.597484 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.92685 -43.37112 -41.17880 -40.65977 -37.81128 -37.69355 -36.38518 -35.33036 -33.94957 -33.16175 -31.91405 -31.26122 -29.27228 -27.90200 -27.46123 -25.62784 -25.57710 -23.84619 -23.20850 -22.37462 -21.53479 -20.60552 -19.86991 -19.23570 -18.73944 -18.61799 -17.94556 -17.84580 -17.74149 -17.23553 -16.79634 -16.50064 -16.12592 -15.66244 -15.32761 -14.98890 -14.77879 -14.28097 -14.22699 -14.04635 -13.90940 -13.62834 -13.32701 -13.27556 -13.19225 -12.99557 -12.83866 -12.82120 -12.62897 -12.52528 -12.40897 -12.39895 -12.19908 -12.15685 -11.67526 -11.59434 -11.00755 -10.89019 -10.66580 -10.59264 -10.32261 -8.30350 -6.45822 -1.47270 -0.90553 -0.04972 0.06351 0.11932 0.24564 0.56819 1.40770 1.41387 1.54536 1.75511 1.82043 1.96440 2.38265 2.79814 3.00125 3.06390 3.17262 3.26178 3.30705 3.42297 3.58680 3.66276 3.89336 4.16344 4.23182 4.43428 4.47858 4.50134 4.54603 4.65180 4.71830 4.79026 4.81577 4.89433 4.98219 5.10512 5.16977 5.34463 5.46798 5.61144 5.84092 6.02318 6.30587 6.43629 6.58989 6.86751 7.24795 8.77470 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.023014 B = 0.002112 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.334807 B =13252.435138 C =14083.798243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.163 3.837 3 C -0.104 4.104 4 C 0.541 3.459 5 O -0.520 6.520 6 O -0.352 6.352 7 C 0.218 3.782 8 H 0.021 0.979 9 C -0.142 4.142 10 C -0.550 4.550 11 H 0.060 0.940 12 C 0.021 3.979 13 N -0.912 5.912 14 Si 0.979 3.021 15 H -0.270 1.270 16 H -0.269 1.269 17 H -0.272 1.272 18 N -0.196 5.196 19 N -0.074 5.074 20 N -0.317 5.317 21 C 0.113 3.887 22 C -0.047 4.047 23 C -0.066 4.066 24 C -0.028 4.028 25 C -0.042 4.042 26 N 0.028 4.972 27 O -0.128 6.128 28 O -0.215 6.215 29 C -0.050 4.050 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.040 0.960 34 H 0.031 0.969 35 H 0.085 0.915 36 H 0.272 0.728 37 H 0.185 0.815 38 H 0.217 0.783 39 H 0.191 0.809 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 -27.914 -5.309 30.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.028 3.972 3 C -0.240 4.240 4 C 0.384 3.616 5 O -0.410 6.410 6 O -0.268 6.268 7 C 0.165 3.835 8 H 0.039 0.961 9 C -0.200 4.200 10 C -0.587 4.587 11 H 0.078 0.922 12 C -0.179 4.179 13 N -0.550 5.550 14 Si 0.803 3.197 15 H -0.194 1.194 16 H -0.194 1.194 17 H -0.198 1.198 18 N -0.070 5.070 19 N -0.053 5.053 20 N -0.097 5.097 21 C 0.022 3.978 22 C -0.067 4.067 23 C -0.084 4.084 24 C -0.047 4.047 25 C -0.126 4.126 26 N 0.545 4.455 27 O -0.354 6.354 28 O -0.417 6.417 29 C -0.071 4.071 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.202 0.798 38 H 0.234 0.766 39 H 0.209 0.791 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.274 -27.385 -5.684 29.466 hybrid contribution 0.484 1.056 1.000 1.532 sum -8.791 -26.329 -4.684 28.150 Atomic orbital electron populations 1.21167 0.80532 1.06804 1.07409 1.22439 0.97682 0.83902 0.93198 1.20239 0.89662 0.92827 1.21249 1.19683 0.84136 0.85063 0.72682 1.90751 1.17479 1.84711 1.48021 1.86637 1.40005 1.18380 1.81745 1.20493 0.95005 0.72652 0.95311 0.96147 1.21993 0.99383 1.02884 0.95714 1.21287 1.06545 0.93346 1.37570 0.92218 1.25732 0.97614 0.98641 0.95946 1.69986 1.25169 1.14684 1.45125 0.85186 0.78335 0.77963 0.78237 1.19448 1.19427 1.19756 1.74789 1.19933 1.03975 1.08299 1.82159 0.96395 1.02912 1.23803 1.47510 1.06344 1.05229 1.50620 1.17386 0.99949 0.78851 1.01625 1.22152 0.92038 0.99304 0.93233 1.21738 1.00234 0.89092 0.97331 1.21827 0.88921 1.04580 0.89416 1.20934 1.01457 0.88216 1.01966 1.43842 0.99859 1.01930 0.99904 1.94503 1.68291 1.02225 1.70421 1.94637 1.21970 1.84913 1.40225 1.20624 0.99312 0.90718 0.96464 0.85097 0.86274 0.88343 0.94105 0.94964 0.89621 0.91829 0.79773 0.76583 0.79147 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 8.19 71.24 0.58 -0.82 16 2 C 0.16 3.91 6.84 41.70 0.29 4.20 16 3 C -0.10 -3.68 7.02 40.79 0.29 -3.40 16 4 C 0.54 23.51 7.93 70.23 0.56 24.07 16 5 O -0.52 -22.55 14.11 19.80 0.28 -22.27 16 6 O -0.35 -18.11 9.87 -56.65 -0.56 -18.67 16 7 C 0.22 12.10 2.56 29.85 0.08 12.17 16 8 H 0.02 1.24 7.16 -2.39 -0.02 1.22 16 9 C -0.14 -7.27 9.33 71.98 0.67 -6.60 16 10 C -0.55 -32.07 8.90 25.60 0.23 -31.84 16 11 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 12 C 0.02 1.15 5.30 84.65 0.45 1.60 16 13 N -0.91 -51.73 11.32 21.45 0.24 -51.49 16 14 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 N -0.20 -7.43 12.39 -50.02 -0.62 -8.05 16 19 N -0.07 -2.36 13.64 37.02 0.50 -1.85 16 20 N -0.32 -7.16 3.71 -175.14 -0.65 -7.81 16 21 C 0.11 1.57 6.13 38.08 0.23 1.81 16 22 C -0.05 -0.16 8.37 22.38 0.19 0.02 16 23 C -0.07 0.14 10.04 22.25 0.22 0.36 16 24 C -0.03 -0.09 9.55 22.29 0.21 0.12 16 25 C -0.04 -0.55 6.85 36.36 0.25 -0.30 16 26 N 0.03 0.55 4.45 -46.50 -0.21 0.34 16 27 O -0.13 -2.39 18.44 18.89 0.35 -2.04 16 28 O -0.21 -5.49 18.45 18.88 0.35 -5.14 16 29 C -0.05 -0.82 9.37 22.38 0.21 -0.61 16 30 H 0.13 1.12 8.12 -2.39 -0.02 1.10 16 31 H 0.12 0.65 6.98 -2.38 -0.02 0.63 16 32 H 0.10 1.92 6.73 -2.39 -0.02 1.90 16 33 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 35 H 0.09 4.65 6.07 -2.39 -0.01 4.63 16 36 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 37 H 0.19 -0.28 7.02 -2.91 -0.02 -0.30 16 38 H 0.22 -2.48 8.06 -2.91 -0.02 -2.50 16 39 H 0.19 -0.28 7.60 -2.91 -0.02 -0.30 16 40 H 0.14 2.99 7.61 -2.91 -0.02 2.97 16 Total: -1.00 -80.88 361.38 7.28 -73.60 By element: Atomic # 1 Polarization: -4.26 SS G_CDS: 1.12 Total: -3.14 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 4.45 Total: 0.78 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -0.73 Total: -68.86 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: 0.42 Total: -48.12 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -80.88 7.28 -73.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113694927.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.350 kcal (2) G-P(sol) polarization free energy of solvation -80.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds