Wall clock time and date at job start Sat Apr 11 2020 07:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38627 * 120.71524 * 2 1 4 4 N 1.32249 * 119.20321 * 179.97438 * 3 2 1 5 5 C 1.32560 * 120.74036 * 0.02562 * 4 3 2 6 6 S 1.76194 * 119.22560 * 179.71723 * 5 4 3 7 7 C 1.81004 * 99.99725 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46887 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47166 * 60.00166 * 8 7 6 10 10 O 1.42902 * 109.47321 * 299.99999 * 8 7 6 11 11 C 1.53003 * 109.46954 * 180.02562 * 8 7 6 12 12 O 1.42901 * 109.47187 * 185.00439 * 11 8 7 13 13 C 1.35671 * 117.00120 * 180.02562 * 12 11 8 14 14 C 1.39314 * 119.82045 * 359.71559 * 13 12 11 15 15 C 1.36433 * 120.18491 * 179.76243 * 14 13 12 16 16 C 1.40826 * 119.81417 * 0.51784 * 15 14 13 17 17 C 1.41222 * 120.18284 * 179.71554 * 16 15 14 18 18 H 1.07996 * 119.99256 * 24.57551 * 17 16 15 19 19 C 1.39884 * 120.00031 * 204.57095 * 17 16 15 20 20 N 1.30878 * 120.00247 * 17.93525 * 19 17 16 21 21 Si 1.86804 * 119.99860 * 197.93314 * 19 17 16 22 22 H 1.48503 * 109.47126 * 59.99950 * 21 19 17 23 23 H 1.48495 * 109.47397 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46974 * 300.00202 * 21 19 17 25 25 C 1.40834 * 119.64326 * 359.73910 * 16 15 14 26 26 C 1.36444 * 119.81073 * 0.02562 * 25 16 15 27 27 N 1.32559 * 121.54528 * 0.02562 * 5 4 3 28 28 C 1.32254 * 120.74055 * 359.97438 * 27 5 4 29 29 H 1.08994 * 109.47108 * 89.99811 * 1 2 3 30 30 H 1.08998 * 109.46864 * 210.00175 * 1 2 3 31 31 H 1.09004 * 109.46744 * 329.99720 * 1 2 3 32 32 H 1.07998 * 120.39608 * 359.95745 * 3 2 1 33 33 H 1.09000 * 109.47489 * 299.99592 * 7 6 5 34 34 H 1.09002 * 109.47081 * 60.00158 * 7 6 5 35 35 H 0.96698 * 114.00206 * 300.00153 * 10 8 7 36 36 H 1.09001 * 109.46873 * 304.99553 * 11 8 7 37 37 H 1.08995 * 109.47281 * 65.00432 * 11 8 7 38 38 H 1.08000 * 119.89863 * 0.02575 * 14 13 12 39 39 H 1.08004 * 120.09009 * 180.25303 * 15 14 13 40 40 H 0.97000 * 119.99712 * 179.97438 * 20 19 17 41 41 H 1.08004 * 120.09906 * 179.97438 * 25 16 15 42 42 H 1.07995 * 119.91088 * 179.97438 * 26 25 16 43 43 H 1.08001 * 120.39992 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2151 1.1918 0.0000 4 7 3.5371 1.1569 0.0005 5 6 4.1844 0.0001 0.0005 6 16 5.9463 0.0002 -0.0064 7 6 6.2607 -1.7824 -0.0029 8 6 7.7698 -2.0341 -0.0075 9 1 8.2158 -1.5848 0.8798 10 8 8.3465 -1.4510 -1.1778 11 6 8.0355 -3.5409 -0.0052 12 8 9.4404 -3.7767 0.1081 13 6 9.8485 -5.0704 0.1244 14 6 8.9080 -6.0946 0.0386 15 6 9.3105 -7.3982 0.0495 16 6 10.6801 -7.7072 0.1587 17 6 11.1048 -9.0539 0.1768 18 1 10.4910 -9.8197 -0.2740 19 6 12.3205 -9.3959 0.7784 20 7 12.8917 -8.5683 1.6161 21 14 13.1286 -11.0338 0.3863 22 1 13.4149 -11.1087 -1.0690 23 1 14.3976 -11.1547 1.1478 24 1 12.2151 -12.1405 0.7686 25 6 11.6239 -6.6660 0.2504 26 6 11.2052 -5.3675 0.2333 27 7 3.5372 -1.1568 -0.0005 28 6 2.2151 -1.1917 -0.0010 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6934 2.1374 -0.0007 33 1 5.8213 -2.2271 0.8900 34 1 5.8143 -2.2318 -0.8900 35 1 7.9958 -1.8042 -2.0068 36 1 7.5210 -3.9992 0.8394 37 1 7.6678 -3.9761 -0.9344 38 1 7.8577 -5.8559 -0.0410 39 1 8.5804 -8.1910 -0.0212 40 1 13.7345 -8.8057 2.0336 41 1 12.6761 -6.8946 0.3349 42 1 11.9276 -4.5678 0.3039 43 1 1.6934 -2.1374 -0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134348712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:45 Heat of formation + Delta-G solvation = -27.571413 kcal Electronic energy + Delta-G solvation = -25551.259178 eV Core-core repulsion = 21687.729405 eV Total energy + Delta-G solvation = -3863.529773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26764 -39.08786 -37.55258 -36.05950 -34.27414 -34.16123 -33.33004 -31.68552 -29.79151 -29.05234 -28.29817 -26.86148 -25.07088 -24.61244 -23.48677 -22.26449 -20.73552 -20.62505 -18.90452 -18.15038 -17.38400 -17.13150 -16.59854 -16.34966 -15.65159 -15.56527 -15.25004 -14.92317 -14.82224 -14.42593 -14.05284 -14.01529 -13.89099 -13.66990 -13.28202 -12.97584 -12.85517 -12.71381 -12.33232 -12.16571 -11.85137 -11.57994 -11.42695 -11.31266 -11.13980 -11.07261 -10.92744 -10.65220 -10.64560 -10.25655 -10.16661 -9.98459 -9.84744 -9.68061 -9.34614 -9.02504 -7.99661 -7.65190 -7.04434 -6.72938 -4.26344 0.31620 0.65795 0.89268 1.81186 2.78257 2.94376 3.07792 3.10018 3.20762 3.21791 3.75576 3.79651 3.94778 4.12214 4.23147 4.26292 4.35017 4.37304 4.61044 4.69757 4.78210 5.01252 5.04114 5.07465 5.18388 5.33948 5.41038 5.42411 5.57849 5.65953 5.84199 5.88135 6.04835 6.21674 6.45660 6.71407 6.96787 7.10208 7.17628 7.44332 7.44831 7.53238 7.55693 7.77903 7.99631 8.19682 8.43318 8.63997 8.89152 8.97675 10.21544 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.001658 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.572985 B =16888.705628 C =17785.545414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.207 4.207 3 C 0.162 3.838 4 N -0.500 5.500 5 C 0.281 3.719 6 S 0.045 5.955 7 C -0.147 4.147 8 C 0.124 3.876 9 H 0.116 0.884 10 O -0.543 6.543 11 C 0.046 3.954 12 O -0.316 6.316 13 C -0.010 4.010 14 C -0.168 4.168 15 C -0.199 4.199 16 C 0.088 3.912 17 C -0.464 4.464 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.798 5.798 21 Si 0.908 3.092 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.133 4.133 26 C -0.118 4.118 27 N -0.523 5.523 28 C 0.163 3.837 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.171 0.829 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.376 0.624 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.281 0.719 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.120 15.458 -2.803 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.215 4.215 3 C -0.008 4.008 4 N -0.216 5.216 5 C -0.094 4.094 6 S 0.283 5.717 7 C -0.297 4.297 8 C 0.063 3.937 9 H 0.134 0.866 10 O -0.348 6.348 11 C -0.033 4.033 12 O -0.232 6.232 13 C -0.053 4.053 14 C -0.187 4.187 15 C -0.218 4.218 16 C 0.086 3.914 17 C -0.494 4.494 18 H 0.094 0.906 19 C -0.142 4.142 20 N -0.424 5.424 21 Si 0.732 3.268 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.153 4.153 26 C -0.137 4.137 27 N -0.240 5.240 28 C -0.007 4.007 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.188 0.812 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.223 0.777 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.144 0.856 42 H 0.116 0.884 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -18.540 16.889 -2.182 25.174 hybrid contribution -2.271 -2.366 -0.381 3.302 sum -20.811 14.523 -2.564 25.507 Atomic orbital electron populations 1.20629 0.88971 1.03538 1.02883 1.21633 0.99200 0.95466 1.05171 1.23205 0.89201 0.98405 0.89971 1.68522 1.09827 1.28312 1.14942 1.25295 1.02126 0.86590 0.95359 1.86279 0.88616 1.07470 1.89374 1.24381 1.00767 0.96240 1.08264 1.21651 0.88451 0.92684 0.90896 0.86580 1.86664 1.66993 1.65757 1.15385 1.23016 0.84150 0.94680 1.01452 1.85873 1.21330 1.25199 1.90810 1.18603 0.93564 0.80938 1.12229 1.20394 0.96392 0.93848 1.08016 1.20545 0.95614 0.94095 1.11594 1.17600 0.90414 0.93638 0.89762 1.19428 1.03481 0.93575 1.32910 0.90594 1.25875 0.96690 0.98852 0.92760 1.69824 1.16330 1.36650 1.19602 0.86381 0.78677 0.81984 0.79733 1.18873 1.20371 1.19122 1.20985 1.00191 0.90280 1.03830 1.19845 0.91691 0.96755 1.05362 1.68844 1.10477 1.28427 1.16216 1.23167 0.89312 0.98448 0.89727 0.90629 0.90906 0.90920 0.81186 0.87382 0.88086 0.77709 0.92052 0.92566 0.88928 0.88777 0.90834 0.85646 0.88384 0.81268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.31 10.06 36.01 0.36 0.05 16 2 C -0.21 -1.34 5.91 -104.34 -0.62 -1.96 16 3 C 0.16 1.27 11.00 -17.23 -0.19 1.08 16 4 N -0.50 -5.65 10.40 -13.44 -0.14 -5.79 16 5 C 0.28 3.30 7.85 -90.83 -0.71 2.59 16 6 S 0.05 0.52 21.89 -107.50 -2.35 -1.84 16 7 C -0.15 -1.52 4.50 37.16 0.17 -1.35 16 8 C 0.12 1.53 3.30 -26.73 -0.09 1.44 16 9 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 10 O -0.54 -7.07 12.90 -40.10 -0.52 -7.59 16 11 C 0.05 0.68 4.36 37.16 0.16 0.84 16 12 O -0.32 -6.38 10.09 -23.58 -0.24 -6.62 16 13 C -0.01 -0.23 6.71 -38.78 -0.26 -0.50 16 14 C -0.17 -3.75 8.96 -39.83 -0.36 -4.11 16 15 C -0.20 -4.86 9.74 -39.25 -0.38 -5.24 16 16 C 0.09 2.35 5.57 -106.80 -0.60 1.76 16 17 C -0.46 -12.30 9.04 -37.83 -0.34 -12.64 16 18 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 19 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 20 N -0.80 -20.67 10.96 55.54 0.61 -20.06 16 21 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 22 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 C -0.13 -3.49 8.64 -39.25 -0.34 -3.83 16 26 C -0.12 -2.86 9.92 -39.83 -0.40 -3.26 16 27 N -0.52 -5.62 9.14 -13.44 -0.12 -5.74 16 28 C 0.16 1.28 11.00 -17.23 -0.19 1.09 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.17 8.10 -51.93 -0.42 -0.25 16 31 H 0.07 0.15 8.10 -51.93 -0.42 -0.27 16 32 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.11 1.09 8.11 -51.92 -0.42 0.67 16 34 H 0.10 0.98 8.11 -51.92 -0.42 0.56 16 35 H 0.38 3.62 9.04 45.56 0.41 4.04 16 36 H 0.06 0.88 7.64 -51.93 -0.40 0.48 16 37 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 38 H 0.09 1.77 6.27 -52.49 -0.33 1.44 16 39 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 40 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 41 H 0.13 3.35 6.16 -52.48 -0.32 3.03 16 42 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 43 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -31.97 381.91 -10.71 -42.68 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.80 Total: 7.80 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -3.87 Total: -22.23 kcal Atomic # 7 Polarization: -31.93 SS G_CDS: 0.35 Total: -31.58 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.75 Total: -14.20 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -2.35 Total: -1.84 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.97 -10.71 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134348712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.106 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds