Wall clock time and date at job start Sat Apr 11 2020 07:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38627 * 120.71524 * 2 1 4 4 N 1.32249 * 119.20321 * 179.97438 * 3 2 1 5 5 C 1.32560 * 120.74036 * 0.02562 * 4 3 2 6 6 S 1.76194 * 119.22560 * 179.71723 * 5 4 3 7 7 C 1.81004 * 99.99725 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46887 * 180.02562 * 7 6 5 9 9 H 1.09002 * 109.47166 * 60.00166 * 8 7 6 10 10 O 1.42902 * 109.47321 * 299.99999 * 8 7 6 11 11 C 1.53003 * 109.46954 * 180.02562 * 8 7 6 12 12 O 1.42901 * 109.47187 * 185.00439 * 11 8 7 13 13 C 1.35671 * 117.00120 * 180.02562 * 12 11 8 14 14 C 1.39314 * 119.82045 * 359.71559 * 13 12 11 15 15 C 1.36433 * 120.18491 * 179.76243 * 14 13 12 16 16 C 1.40826 * 119.81417 * 0.51784 * 15 14 13 17 17 C 1.41222 * 120.18284 * 179.71554 * 16 15 14 18 18 H 1.07996 * 119.99256 * 24.57551 * 17 16 15 19 19 C 1.39884 * 120.00031 * 204.57095 * 17 16 15 20 20 N 1.30878 * 120.00247 * 17.93525 * 19 17 16 21 21 Si 1.86804 * 119.99860 * 197.93314 * 19 17 16 22 22 H 1.48503 * 109.47126 * 59.99950 * 21 19 17 23 23 H 1.48495 * 109.47397 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46974 * 300.00202 * 21 19 17 25 25 C 1.40834 * 119.64326 * 359.73910 * 16 15 14 26 26 C 1.36444 * 119.81073 * 0.02562 * 25 16 15 27 27 N 1.32559 * 121.54528 * 0.02562 * 5 4 3 28 28 C 1.32254 * 120.74055 * 359.97438 * 27 5 4 29 29 H 1.08994 * 109.47108 * 89.99811 * 1 2 3 30 30 H 1.08998 * 109.46864 * 210.00175 * 1 2 3 31 31 H 1.09004 * 109.46744 * 329.99720 * 1 2 3 32 32 H 1.07998 * 120.39608 * 359.95745 * 3 2 1 33 33 H 1.09000 * 109.47489 * 299.99592 * 7 6 5 34 34 H 1.09002 * 109.47081 * 60.00158 * 7 6 5 35 35 H 0.96698 * 114.00206 * 300.00153 * 10 8 7 36 36 H 1.09001 * 109.46873 * 304.99553 * 11 8 7 37 37 H 1.08995 * 109.47281 * 65.00432 * 11 8 7 38 38 H 1.08000 * 119.89863 * 0.02575 * 14 13 12 39 39 H 1.08004 * 120.09009 * 180.25303 * 15 14 13 40 40 H 0.97000 * 119.99712 * 179.97438 * 20 19 17 41 41 H 1.08004 * 120.09906 * 179.97438 * 25 16 15 42 42 H 1.07995 * 119.91088 * 179.97438 * 26 25 16 43 43 H 1.08001 * 120.39992 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2151 1.1918 0.0000 4 7 3.5371 1.1569 0.0005 5 6 4.1844 0.0001 0.0005 6 16 5.9463 0.0002 -0.0064 7 6 6.2607 -1.7824 -0.0029 8 6 7.7698 -2.0341 -0.0075 9 1 8.2158 -1.5848 0.8798 10 8 8.3465 -1.4510 -1.1778 11 6 8.0355 -3.5409 -0.0052 12 8 9.4404 -3.7767 0.1081 13 6 9.8485 -5.0704 0.1244 14 6 8.9080 -6.0946 0.0386 15 6 9.3105 -7.3982 0.0495 16 6 10.6801 -7.7072 0.1587 17 6 11.1048 -9.0539 0.1768 18 1 10.4910 -9.8197 -0.2740 19 6 12.3205 -9.3959 0.7784 20 7 12.8917 -8.5683 1.6161 21 14 13.1286 -11.0338 0.3863 22 1 13.4149 -11.1087 -1.0690 23 1 14.3976 -11.1547 1.1478 24 1 12.2151 -12.1405 0.7686 25 6 11.6239 -6.6660 0.2504 26 6 11.2052 -5.3675 0.2333 27 7 3.5372 -1.1568 -0.0005 28 6 2.2151 -1.1917 -0.0010 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6934 2.1374 -0.0007 33 1 5.8213 -2.2271 0.8900 34 1 5.8143 -2.2318 -0.8900 35 1 7.9958 -1.8042 -2.0068 36 1 7.5210 -3.9992 0.8394 37 1 7.6678 -3.9761 -0.9344 38 1 7.8577 -5.8559 -0.0410 39 1 8.5804 -8.1910 -0.0212 40 1 13.7345 -8.8057 2.0336 41 1 12.6761 -6.8946 0.3349 42 1 11.9276 -4.5678 0.3039 43 1 1.6934 -2.1374 -0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134348712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:44 Heat of formation + Delta-G solvation = -47.316198 kcal Electronic energy + Delta-G solvation = -25552.115376 eV Core-core repulsion = 21687.729405 eV Total energy + Delta-G solvation = -3864.385971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90753 -40.65830 -38.91741 -37.62121 -35.18176 -34.88283 -34.74144 -32.74883 -31.60753 -30.90798 -28.82121 -28.05250 -26.47085 -25.65320 -24.11467 -23.48392 -22.50972 -22.26319 -19.64427 -19.25716 -18.87795 -18.59076 -17.72526 -17.50696 -17.02911 -16.41568 -16.29445 -16.05955 -15.73526 -15.66555 -15.37136 -15.33616 -14.79896 -14.57361 -14.08489 -14.05897 -14.00132 -13.91876 -13.69799 -13.46373 -13.18114 -13.07496 -12.78348 -12.66234 -12.48380 -12.31633 -12.02449 -11.95057 -11.72289 -11.60092 -11.46347 -11.33336 -11.08665 -10.87056 -10.82029 -10.35548 -9.55608 -8.92466 -8.78765 -8.59131 -6.22372 -0.32227 0.04942 0.09779 0.95858 1.01315 1.03331 1.40114 1.50960 1.55228 2.23083 2.48509 2.56345 2.73294 3.16467 3.34145 3.56975 3.64505 3.70515 3.73567 3.77139 3.89336 3.91460 3.98469 4.16270 4.28810 4.35746 4.44647 4.57082 4.67324 4.82471 4.83997 4.90051 5.03655 5.07136 5.08006 5.22206 5.28569 5.40577 5.58754 5.64857 5.83648 5.88642 6.06152 6.26795 6.56340 6.70036 6.77943 6.80976 6.95499 7.10037 8.37297 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.001658 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.572985 B =16888.705628 C =17785.545414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.189 4.189 3 C 0.147 3.853 4 N -0.528 5.528 5 C 0.260 3.740 6 S 0.015 5.985 7 C -0.127 4.127 8 C 0.136 3.864 9 H 0.108 0.892 10 O -0.559 6.559 11 C 0.037 3.963 12 O -0.329 6.329 13 C 0.001 3.999 14 C -0.164 4.164 15 C -0.207 4.207 16 C 0.054 3.946 17 C -0.500 4.500 18 H 0.077 0.923 19 C 0.033 3.967 20 N -0.831 5.831 21 Si 0.982 3.018 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.259 1.259 25 C -0.153 4.153 26 C -0.133 4.133 27 N -0.538 5.538 28 C 0.146 3.854 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.201 0.799 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.389 0.611 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.131 0.869 39 H 0.106 0.894 40 H 0.287 0.713 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.937 15.454 -3.201 28.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.196 4.196 3 C -0.021 4.021 4 N -0.245 5.245 5 C -0.115 4.115 6 S 0.252 5.748 7 C -0.276 4.276 8 C 0.075 3.925 9 H 0.126 0.874 10 O -0.366 6.366 11 C -0.040 4.040 12 O -0.245 6.245 13 C -0.043 4.043 14 C -0.183 4.183 15 C -0.227 4.227 16 C 0.052 3.948 17 C -0.529 4.529 18 H 0.095 0.905 19 C -0.181 4.181 20 N -0.458 5.458 21 Si 0.803 3.197 22 H -0.186 1.186 23 H -0.194 1.194 24 H -0.183 1.183 25 C -0.172 4.172 26 C -0.152 4.152 27 N -0.255 5.255 28 C -0.022 4.022 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.217 0.783 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.239 0.761 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.148 0.852 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -21.406 16.906 -2.589 27.399 hybrid contribution -1.655 -2.165 -0.269 2.739 sum -23.061 14.740 -2.858 27.518 Atomic orbital electron populations 1.20736 0.86132 1.04904 1.03975 1.22026 1.01013 0.94426 1.02169 1.23819 0.88338 1.00378 0.89564 1.68479 1.11623 1.28532 1.15819 1.25128 1.01856 0.87258 0.97288 1.86259 0.90005 1.08359 1.90205 1.24153 0.98987 0.95602 1.08859 1.21480 0.89681 0.90807 0.90569 0.87446 1.86638 1.67581 1.66113 1.16293 1.23380 0.81330 0.96629 1.02679 1.85861 1.24781 1.23400 1.90456 1.18663 0.93162 0.82387 1.10122 1.20707 0.98262 0.92765 1.06556 1.20797 0.95058 0.95536 1.11301 1.17967 0.91683 0.94140 0.91048 1.19692 1.05043 0.93782 1.34430 0.90509 1.26738 0.96688 1.02684 0.91950 1.69886 1.16887 1.38685 1.20340 0.85258 0.77803 0.77187 0.79477 1.18566 1.19384 1.18349 1.20897 0.99553 0.91208 1.05568 1.20010 0.93130 0.96385 1.05702 1.68810 1.11950 1.28096 1.16683 1.23775 0.88662 1.00310 0.89469 0.89420 0.89662 0.89498 0.78255 0.86993 0.87182 0.76091 0.90940 0.90945 0.85176 0.87570 0.90216 0.87296 0.87549 0.78491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.25 10.06 71.24 0.72 0.47 16 2 C -0.19 -1.96 5.91 -19.68 -0.12 -2.08 16 3 C 0.15 2.04 11.00 84.72 0.93 2.97 16 4 N -0.53 -11.59 10.40 -196.44 -2.04 -13.64 16 5 C 0.26 5.97 7.85 180.42 1.42 7.39 16 6 S 0.02 0.35 21.89 -56.49 -1.24 -0.89 16 7 C -0.13 -2.46 4.50 71.98 0.32 -2.14 16 8 C 0.14 3.18 3.30 30.60 0.10 3.28 16 9 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 10 O -0.56 -14.01 12.90 -144.32 -1.86 -15.87 16 11 C 0.04 1.03 4.36 71.98 0.31 1.35 16 12 O -0.33 -12.87 10.09 -85.23 -0.86 -13.73 16 13 C 0.00 0.02 6.71 22.79 0.15 0.18 16 14 C -0.16 -7.10 8.96 22.11 0.20 -6.91 16 15 C -0.21 -10.09 9.74 22.48 0.22 -9.88 16 16 C 0.05 2.94 5.57 -21.28 -0.12 2.82 16 17 C -0.50 -27.12 9.04 23.40 0.21 -26.91 16 18 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 19 C 0.03 1.70 5.13 85.23 0.44 2.14 16 20 N -0.83 -44.21 10.96 21.82 0.24 -43.97 16 21 Si 0.98 38.52 29.60 68.60 2.03 40.55 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 25 C -0.15 -8.27 8.64 22.49 0.19 -8.08 16 26 C -0.13 -6.61 9.92 22.11 0.22 -6.39 16 27 N -0.54 -10.87 9.14 -196.44 -1.80 -12.66 16 28 C 0.15 1.98 11.00 84.72 0.93 2.91 16 29 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.08 0.06 8.10 -2.39 -0.02 0.04 16 31 H 0.09 0.02 8.10 -2.38 -0.02 0.00 16 32 H 0.20 1.28 8.06 -2.91 -0.02 1.25 16 33 H 0.11 2.09 8.11 -2.39 -0.02 2.07 16 34 H 0.11 1.93 8.11 -2.39 -0.02 1.92 16 35 H 0.39 7.00 9.04 -74.06 -0.67 6.33 16 36 H 0.07 1.88 7.64 -2.39 -0.02 1.86 16 37 H 0.07 1.80 7.66 -2.39 -0.02 1.78 16 38 H 0.13 4.56 6.27 -2.91 -0.02 4.54 16 39 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 40 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 41 H 0.11 6.13 6.16 -2.91 -0.02 6.12 16 42 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 43 H 0.20 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -71.09 381.91 0.98 -70.10 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.38 Total: 28.97 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 6.13 Total: -38.87 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -3.60 Total: -70.27 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -2.72 Total: -29.60 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -1.24 Total: -0.89 kcal Total: -71.09 0.98 -70.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134348712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.787 kcal (2) G-P(sol) polarization free energy of solvation -71.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds