Wall clock time and date at job start Sat Apr 11 2020 07:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00262 * 2 1 4 4 H 1.48495 * 109.47172 * 240.00216 * 3 2 1 5 5 H 1.48501 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47236 * 120.00308 * 3 2 1 7 7 C 1.38810 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99431 * 196.83281 * 7 2 1 9 9 N 1.36939 * 120.00336 * 16.83791 * 7 2 1 10 10 C 1.46961 * 120.59268 * 208.67554 * 9 7 2 11 11 C 1.53371 * 108.63550 * 235.24697 * 10 9 7 12 12 N 1.46961 * 108.63147 * 310.57502 * 11 10 9 13 13 C 1.34780 * 120.59360 * 235.20340 * 12 11 10 14 14 O 1.21566 * 120.00063 * 4.25441 * 13 12 11 15 15 C 1.47722 * 119.99734 * 184.25863 * 13 12 11 16 16 C 1.39670 * 120.12346 * 46.02867 * 15 13 12 17 17 C 1.37815 * 119.88174 * 179.97438 * 16 15 13 18 18 C 1.38676 * 120.11973 * 0.02562 * 17 16 15 19 19 F 1.35095 * 119.88255 * 180.02562 * 18 17 16 20 20 C 1.38631 * 120.23722 * 0.02562 * 18 17 16 21 21 C 1.37855 * 120.12168 * 359.96206 * 20 18 17 22 22 C 1.50704 * 120.06238 * 180.02562 * 21 20 18 23 23 F 1.39901 * 109.47098 * 0.02562 * 22 21 20 24 24 F 1.39903 * 109.46878 * 120.00010 * 22 21 20 25 25 F 1.39898 * 109.47499 * 240.00312 * 22 21 20 26 26 C 1.46965 * 118.81072 * 55.48299 * 12 11 10 27 27 C 1.46959 * 120.59145 * 28.69836 * 9 7 2 28 28 H 0.97006 * 119.99390 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.61144 * 115.49897 * 10 9 7 30 30 H 1.09007 * 109.61216 * 354.99033 * 10 9 7 31 31 H 1.09003 * 109.60722 * 190.83075 * 11 10 9 32 32 H 1.08994 * 109.60812 * 70.32493 * 11 10 9 33 33 H 1.08003 * 120.05464 * 359.97438 * 16 15 13 34 34 H 1.08007 * 119.93906 * 180.29363 * 17 16 15 35 35 H 1.08010 * 119.94029 * 179.97438 * 20 18 17 36 36 H 1.08998 * 109.60948 * 64.26364 * 26 12 11 37 37 H 1.09008 * 109.60938 * 184.77258 * 26 12 11 38 38 H 1.09005 * 109.60539 * 244.49357 * 27 9 7 39 39 H 1.08996 * 109.61132 * 5.00483 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2223 0.2703 9 7 1.3695 -2.3625 -0.3446 10 6 1.8078 -3.6514 0.2090 11 6 2.1060 -4.6076 -0.9524 12 7 0.9680 -4.5864 -1.8821 13 6 0.3380 -5.7285 -2.2213 14 8 0.6591 -6.7782 -1.6989 15 6 -0.7427 -5.7049 -3.2281 16 6 -0.5732 -5.0001 -4.4220 17 6 -1.5845 -4.9818 -5.3581 18 6 -2.7691 -5.6610 -5.1161 19 9 -3.7571 -5.6403 -6.0372 20 6 -2.9431 -6.3612 -3.9323 21 6 -1.9379 -6.3863 -2.9893 22 6 -2.1282 -7.1484 -1.7031 23 9 -3.3946 -7.7430 -1.6964 24 9 -1.1472 -8.1405 -1.5994 25 9 -2.0194 -6.2698 -0.6199 26 6 0.5333 -3.2981 -2.4401 27 6 0.2316 -2.3412 -1.2743 28 1 -0.4849 0.8401 0.0004 29 1 1.0179 -4.0691 0.8333 30 1 2.7095 -3.5063 0.8041 31 1 2.2454 -5.6180 -0.5678 32 1 3.0082 -4.2832 -1.4709 33 1 0.3488 -4.4705 -4.6112 34 1 -1.4526 -4.4411 -6.2837 35 1 -3.8678 -6.8882 -3.7486 36 1 1.3261 -2.8827 -3.0621 37 1 -0.3663 -3.4435 -3.0383 38 1 -0.6706 -2.6657 -0.7557 39 1 0.0922 -1.3309 -1.6588 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161419539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:53 Heat of formation + Delta-G solvation = -158.369331 kcal Electronic energy + Delta-G solvation = -31799.141958 eV Core-core repulsion = 26821.870445 eV Total energy + Delta-G solvation = -4977.271513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.05407 -49.32834 -47.63477 -47.37985 -40.55312 -38.57543 -36.87343 -34.06741 -32.47175 -31.99454 -30.84670 -30.09005 -27.24241 -26.31032 -24.43155 -23.27724 -23.19643 -22.30463 -20.84340 -19.37175 -18.62327 -18.48177 -18.32425 -17.65946 -16.73459 -16.48926 -16.34724 -16.04340 -15.74473 -14.98692 -14.82330 -14.74331 -14.39301 -14.32274 -14.08946 -13.92489 -13.77240 -13.67635 -13.59681 -13.57902 -13.35500 -13.28438 -13.01404 -12.80857 -12.55448 -12.34759 -11.71885 -11.52751 -11.36936 -10.88854 -10.82862 -10.58229 -10.31823 -10.16368 -9.93529 -9.78061 -9.64799 -9.12640 -8.66168 -8.39192 -6.77834 -5.91334 -3.36554 0.26091 0.54771 2.53635 2.56400 2.96882 3.27344 3.31169 3.37559 3.38288 3.53245 3.78009 4.00531 4.33151 4.40637 4.44272 4.47247 4.48688 4.77900 5.00443 5.17185 5.26272 5.34322 5.45407 5.57519 5.64868 5.68233 5.74900 5.85289 5.97017 6.08285 6.20703 6.25065 6.32506 6.71270 6.82545 7.10148 7.37108 7.63639 7.69909 8.25280 8.30004 9.05927 9.68175 10.25313 11.16555 Molecular weight = 346.10amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.003736 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.736547 B = 7493.123995 C = 8370.897375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.590 5.590 10 C 0.131 3.869 11 C 0.096 3.904 12 N -0.581 5.581 13 C 0.539 3.461 14 O -0.529 6.529 15 C -0.078 4.078 16 C -0.059 4.059 17 C -0.126 4.126 18 C 0.115 3.885 19 F -0.128 7.128 20 C -0.115 4.115 21 C -0.112 4.112 22 C 0.507 3.493 23 F -0.181 7.181 24 F -0.150 7.150 25 F -0.167 7.167 26 C 0.069 3.931 27 C 0.159 3.841 28 H 0.256 0.744 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.026 0.974 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.626 -11.257 -11.354 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.004 3.996 11 C -0.027 4.027 12 N -0.312 5.312 13 C 0.326 3.674 14 O -0.407 6.407 15 C -0.081 4.081 16 C -0.078 4.078 17 C -0.145 4.145 18 C 0.096 3.904 19 F -0.107 7.107 20 C -0.134 4.134 21 C -0.115 4.115 22 C 0.452 3.548 23 F -0.163 7.163 24 F -0.131 7.131 25 F -0.148 7.148 26 C -0.055 4.055 27 C 0.032 3.968 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.581 -11.641 -11.020 16.672 hybrid contribution 0.043 0.916 0.000 0.917 sum -4.538 -10.725 -11.020 16.033 Atomic orbital electron populations 1.70003 1.05318 1.25908 1.53350 1.25087 0.95293 0.98558 1.00429 0.86336 0.78912 0.83082 0.78232 1.20921 1.21572 1.20782 1.19165 0.92613 0.84538 1.42438 0.91441 1.43978 1.36249 1.01794 1.49260 1.21313 0.98675 0.86974 0.92680 1.22304 0.86995 1.01504 0.91933 1.47979 1.32126 1.06424 1.44695 1.18128 0.82385 0.84615 0.82315 1.90863 1.65663 1.30069 1.54141 1.19882 0.93999 0.97695 0.96565 1.21289 0.99713 0.95603 0.91162 1.21324 0.92015 0.99864 1.01304 1.17604 0.86429 0.99076 0.87305 1.91552 1.59985 1.94795 1.64334 1.20864 1.00127 1.00202 0.92186 1.19793 0.95564 1.01175 0.94934 1.18043 0.74092 0.78392 0.84237 1.93153 1.41511 1.84863 1.96762 1.93342 1.61317 1.62062 1.96329 1.93280 1.95648 1.68675 1.57236 1.23102 0.99247 0.83879 0.99232 1.21259 0.89403 0.98313 0.87839 0.93356 0.95618 0.91300 0.89643 0.91454 0.82830 0.82965 0.82617 0.91234 0.90709 0.95631 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.84 11.19 55.49 0.62 -24.21 16 2 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 3 Si 0.90 20.55 29.59 -169.99 -5.03 15.52 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.66 9.57 -15.06 -0.14 -6.80 16 8 H 0.07 1.70 7.88 -52.48 -0.41 1.29 16 9 N -0.59 -13.91 2.96 -171.77 -0.51 -14.42 16 10 C 0.13 2.66 6.67 -3.60 -0.02 2.63 16 11 C 0.10 1.68 6.60 -3.60 -0.02 1.66 16 12 N -0.58 -9.99 2.94 -173.37 -0.51 -10.50 16 13 C 0.54 9.16 6.24 -12.38 -0.08 9.08 16 14 O -0.53 -10.25 13.13 5.31 0.07 -10.18 16 15 C -0.08 -1.09 4.96 -104.97 -0.52 -1.61 16 16 C -0.06 -0.63 7.40 -39.20 -0.29 -0.92 16 17 C -0.13 -1.12 10.01 -39.57 -0.40 -1.52 16 18 C 0.12 1.15 7.31 -39.27 -0.29 0.86 16 19 F -0.13 -1.27 17.26 2.25 0.04 -1.23 16 20 C -0.11 -1.25 9.40 -39.58 -0.37 -1.62 16 21 C -0.11 -1.51 5.40 -104.24 -0.56 -2.07 16 22 C 0.51 7.63 2.81 36.01 0.10 7.73 16 23 F -0.18 -2.39 15.97 2.25 0.04 -2.36 16 24 F -0.15 -2.50 14.38 2.25 0.03 -2.47 16 25 F -0.17 -2.90 16.48 2.25 0.04 -2.86 16 26 C 0.07 1.15 5.36 -3.37 -0.02 1.13 16 27 C 0.16 3.47 5.52 -3.37 -0.02 3.45 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 31 H 0.09 1.46 6.99 -51.93 -0.36 1.10 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.15 1.40 7.04 -52.48 -0.37 1.03 16 34 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.16 1.41 7.15 -52.48 -0.38 1.04 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.07 4.80 -51.92 -0.25 0.82 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 2.44 6.00 -51.93 -0.31 2.13 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -30.12 334.12 -6.64 -36.76 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -3.74 Total: -1.16 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -2.72 Total: 12.07 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.40 Total: -49.13 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.07 Total: -10.18 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 0.14 Total: -8.92 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.12 -6.64 -36.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161419539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.606 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds