Wall clock time and date at job start Sat Apr 11 2020 07:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00138 * 2 1 4 4 H 1.48504 * 109.46790 * 269.99834 * 3 2 1 5 5 H 1.48495 * 109.47278 * 29.99249 * 3 2 1 6 6 H 1.48493 * 109.47491 * 150.00187 * 3 2 1 7 7 C 1.37883 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99666 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00238 * 179.97438 * 7 2 1 10 10 N 1.46490 * 109.47116 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00433 * 96.50328 * 10 9 7 12 12 C 1.50703 * 109.46718 * 264.98528 * 11 10 9 13 13 C 1.34515 * 125.78866 * 89.99854 * 12 11 10 14 14 C 1.41384 * 106.83728 * 179.97438 * 13 12 11 15 15 C 1.34509 * 106.84189 * 359.97438 * 14 13 12 16 16 O 1.34300 * 108.42223 * 359.73582 * 15 14 13 17 17 C 1.34775 * 119.99968 * 276.50058 * 10 9 7 18 18 O 1.21365 * 120.00199 * 185.67245 * 17 10 9 19 19 C 1.49348 * 119.99994 * 5.66532 * 17 10 9 20 20 O 1.21378 * 120.00163 * 355.55953 * 19 17 10 21 21 N 1.34782 * 119.99748 * 175.55616 * 19 17 10 22 22 C 1.39809 * 119.99698 * 185.33450 * 21 19 17 23 23 C 1.38912 * 120.05260 * 214.32539 * 22 21 19 24 24 C 1.38093 * 119.94798 * 179.72465 * 23 22 21 25 25 C 1.38493 * 120.05222 * 0.54913 * 24 23 22 26 26 F 1.35092 * 119.94987 * 179.70388 * 25 24 23 27 27 C 1.38488 * 120.10118 * 359.72666 * 25 24 23 28 28 C 1.38098 * 120.05259 * 359.97438 * 27 25 24 29 29 H 0.96993 * 120.00030 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46779 * 60.00354 * 9 7 2 31 31 H 1.09001 * 109.47333 * 300.00864 * 9 7 2 32 32 H 1.09004 * 109.46819 * 24.98025 * 11 10 9 33 33 H 1.08999 * 109.47280 * 144.98491 * 11 10 9 34 34 H 1.08000 * 126.57928 * 0.03300 * 13 12 11 35 35 H 1.08003 * 126.57700 * 179.97438 * 14 13 12 36 36 H 1.08001 * 125.78693 * 180.02562 * 15 14 13 37 37 H 0.96990 * 120.00272 * 5.34104 * 21 19 17 38 38 H 1.07998 * 120.02279 * 0.02562 * 23 22 21 39 39 H 1.08001 * 119.97023 * 180.27803 * 24 23 22 40 40 H 1.07998 * 119.97884 * 179.97438 * 27 25 24 41 41 H 1.07996 * 120.02784 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 7 3.9999 -2.5752 0.0001 11 6 4.3791 -3.2183 -1.2605 12 6 3.2123 -4.0113 -1.7906 13 6 2.2580 -3.5490 -2.6182 14 6 1.3684 -4.6215 -2.8572 15 6 1.8326 -5.6752 -2.1619 16 8 2.9530 -5.3016 -1.5226 17 6 4.1004 -3.2543 1.1599 18 8 4.6004 -4.3601 1.1743 19 6 3.5964 -2.6461 2.4274 20 8 3.1704 -1.5096 2.4278 21 7 3.6147 -3.3594 3.5709 22 6 3.0418 -2.8328 4.7324 23 6 3.6015 -3.1125 5.9726 24 6 3.0372 -2.5866 7.1180 25 6 1.9074 -1.7902 7.0319 26 9 1.3535 -1.2817 8.1543 27 6 1.3443 -1.5147 5.7971 28 6 1.9087 -2.0334 4.6484 29 1 -0.4850 0.8400 -0.0004 30 1 3.8752 -0.6797 0.8895 31 1 3.8746 -0.6807 -0.8904 32 1 4.6603 -2.4560 -1.9870 33 1 5.2236 -3.8855 -1.0883 34 1 2.1858 -2.5504 -3.0232 35 1 0.4855 -4.5991 -3.4789 36 1 1.3833 -6.6567 -2.1275 37 1 4.0254 -4.2379 3.5880 38 1 4.4802 -3.7367 6.0406 39 1 3.4747 -2.8001 8.0821 40 1 0.4630 -0.8938 5.7322 41 1 1.4690 -1.8186 3.6856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164249118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:01 Heat of formation + Delta-G solvation = -59.157472 kcal Electronic energy + Delta-G solvation = -30325.351330 eV Core-core repulsion = 25894.238706 eV Total energy + Delta-G solvation = -4431.112624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.87989 -43.40767 -42.10713 -40.44668 -39.01053 -37.40903 -35.59700 -34.56197 -33.82206 -32.19244 -31.95376 -30.42288 -29.73680 -27.64601 -25.48829 -24.43410 -24.19336 -22.81226 -22.59024 -21.57333 -20.84408 -19.19025 -19.10416 -18.63004 -18.51448 -18.16605 -17.60052 -17.28405 -17.03099 -16.62942 -16.57477 -16.21749 -16.01489 -15.61697 -15.44541 -15.04794 -14.80568 -14.58009 -14.44963 -14.15788 -14.01947 -13.95793 -13.69361 -13.62561 -13.53404 -13.48966 -13.07190 -12.71979 -12.63641 -12.26721 -12.14045 -11.96864 -11.65468 -11.34872 -10.76424 -10.72778 -10.40542 -10.11731 -9.83851 -9.33251 -9.12969 -8.19467 -6.19315 -0.12853 0.20613 0.47711 0.76552 1.35593 1.36671 1.43661 1.50943 1.80722 2.06928 2.27990 2.40638 2.54700 2.60812 3.17881 3.26855 3.29897 3.75347 3.84239 3.86740 4.09673 4.20343 4.20548 4.27959 4.38575 4.46262 4.46820 4.61317 4.91081 4.96487 4.98683 5.07732 5.08268 5.16656 5.19488 5.25115 5.29586 5.40688 5.53588 5.65567 5.87105 5.98008 6.10313 6.27917 6.38822 6.69990 6.77627 6.97999 7.40895 8.97135 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.010095 B = 0.004049 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2772.968344 B = 6913.294169 C = 8450.803324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.260 1.260 5 H -0.296 1.296 6 H -0.247 1.247 7 C -0.490 4.490 8 H 0.025 0.975 9 C 0.204 3.796 10 N -0.560 5.560 11 C 0.194 3.806 12 C -0.048 4.048 13 C -0.188 4.188 14 C -0.233 4.233 15 C -0.043 4.043 16 O -0.187 6.187 17 C 0.512 3.488 18 O -0.542 6.542 19 C 0.493 3.507 20 O -0.475 6.475 21 N -0.642 5.642 22 C 0.130 3.870 23 C -0.099 4.099 24 C -0.120 4.120 25 C 0.072 3.928 26 F -0.144 7.144 27 C -0.141 4.141 28 C -0.112 4.112 29 H 0.261 0.739 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.140 0.860 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.161 0.839 36 H 0.238 0.762 37 H 0.430 0.570 38 H 0.176 0.824 39 H 0.175 0.825 40 H 0.136 0.864 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.835 -8.455 6.074 14.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.174 4.174 3 Si 0.754 3.246 4 H -0.185 1.185 5 H -0.222 1.222 6 H -0.171 1.171 7 C -0.529 4.529 8 H 0.043 0.957 9 C 0.083 3.917 10 N -0.290 5.290 11 C 0.073 3.927 12 C -0.099 4.099 13 C -0.208 4.208 14 C -0.252 4.252 15 C -0.110 4.110 16 O -0.084 6.084 17 C 0.294 3.706 18 O -0.421 6.421 19 C 0.274 3.726 20 O -0.346 6.346 21 N -0.292 5.292 22 C 0.036 3.964 23 C -0.119 4.119 24 C -0.139 4.139 25 C 0.052 3.948 26 F -0.123 7.123 27 C -0.160 4.160 28 C -0.133 4.133 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.127 0.873 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.254 0.746 37 H 0.270 0.730 38 H 0.193 0.807 39 H 0.193 0.807 40 H 0.154 0.846 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.844 -8.235 6.199 14.253 hybrid contribution -1.025 0.875 -0.306 1.382 sum 8.818 -7.360 5.892 12.910 Atomic orbital electron populations 1.70046 1.08099 1.27471 1.53227 1.25496 0.95161 1.02233 0.94470 0.85984 0.79894 0.79611 0.79083 1.18523 1.22205 1.17096 1.21075 0.90328 0.92480 1.49026 0.95670 1.20217 0.94109 0.77885 0.99502 1.47986 1.60638 1.15232 1.05130 1.20152 0.91678 0.95893 0.85014 1.22925 1.02234 0.82841 1.01888 1.21778 0.95966 1.00566 1.02480 1.22126 1.03258 0.93537 1.06308 1.24729 0.87468 1.01988 0.96819 1.84027 1.39177 1.26608 1.58542 1.19898 0.80052 0.85252 0.85374 1.90682 1.44962 1.19598 1.86888 1.20360 0.80425 0.86391 0.85377 1.90901 1.41373 1.17719 1.84567 1.43030 1.57546 1.21786 1.06795 1.17940 0.93123 0.98637 0.86696 1.21087 1.00698 1.01598 0.88542 1.21257 0.94491 0.97166 1.01026 1.17811 0.95976 0.99381 0.81643 1.91473 1.85081 1.85781 1.49983 1.21062 1.01930 1.02149 0.90903 1.20988 0.94885 0.98702 0.98710 0.93002 0.91911 0.93149 0.84231 0.87308 0.83979 0.82162 0.74629 0.72975 0.80678 0.80722 0.84603 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.02 13.96 21.45 0.30 -57.73 16 2 C 0.02 1.33 5.47 84.66 0.46 1.79 16 3 Si 0.93 42.79 27.47 68.60 1.88 44.67 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.49 -26.33 8.44 25.60 0.22 -26.11 16 8 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 9 C 0.20 8.85 3.88 85.64 0.33 9.18 16 10 N -0.56 -21.59 2.47 -832.22 -2.06 -23.65 16 11 C 0.19 6.22 5.98 85.63 0.51 6.73 16 12 C -0.05 -1.75 6.86 24.83 0.17 -1.58 16 13 C -0.19 -6.93 10.81 22.19 0.24 -6.69 16 14 C -0.23 -7.63 10.91 22.19 0.24 -7.39 16 15 C -0.04 -1.27 12.09 66.97 0.81 -0.47 16 16 O -0.19 -6.72 10.65 -2.45 -0.03 -6.75 16 17 C 0.51 19.77 7.63 87.24 0.67 20.43 16 18 O -0.54 -20.52 16.12 -3.29 -0.05 -20.58 16 19 C 0.49 18.91 7.44 87.24 0.65 19.56 16 20 O -0.47 -21.38 9.95 -3.33 -0.03 -21.42 16 21 N -0.64 -19.25 5.33 -304.78 -1.62 -20.87 16 22 C 0.13 3.75 6.25 38.20 0.24 3.99 16 23 C -0.10 -1.98 9.96 22.40 0.22 -1.76 16 24 C -0.12 -2.33 10.02 22.30 0.22 -2.11 16 25 C 0.07 1.82 7.30 22.39 0.16 1.99 16 26 F -0.14 -3.70 17.26 44.97 0.78 -2.93 16 27 C -0.14 -4.26 10.02 22.30 0.22 -4.04 16 28 C -0.11 -3.88 8.65 22.40 0.19 -3.69 16 29 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.06 2.86 4.81 -2.39 -0.01 2.84 16 31 H 0.05 1.98 7.20 -2.39 -0.02 1.96 16 32 H 0.14 3.59 7.78 -2.39 -0.02 3.57 16 33 H 0.11 3.12 7.50 -2.39 -0.02 3.11 16 34 H 0.14 5.31 8.06 -2.91 -0.02 5.29 16 35 H 0.16 4.49 8.06 -2.91 -0.02 4.46 16 36 H 0.24 4.67 8.06 -2.91 -0.02 4.64 16 37 H 0.43 10.41 8.30 -92.72 -0.77 9.64 16 38 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 40 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 41 H 0.11 4.81 6.51 -2.91 -0.02 4.79 16 Total: -1.00 -73.74 362.49 5.01 -68.73 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.28 Total: 30.67 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 5.57 Total: 9.85 kcal Atomic # 7 Polarization: -98.87 SS G_CDS: -3.38 Total: -102.25 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.11 Total: -48.74 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.78 Total: -2.93 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Total: -73.74 5.01 -68.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164249118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.571 kcal (2) G-P(sol) polarization free energy of solvation -73.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds