Wall clock time and date at job start Sat Apr 11 2020 07:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 120.41644 * 2 1 4 4 N 1.31856 * 120.76416 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72100 * 359.97438 * 4 3 2 6 6 C 1.38179 * 120.77129 * 0.02562 * 5 4 3 7 7 C 1.38626 * 120.41846 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.79214 * 0.04237 * 7 2 1 9 9 C 1.53007 * 109.46806 * 84.97885 * 8 7 2 10 10 N 1.46501 * 109.46844 * 180.02562 * 9 8 7 11 11 S 1.65598 * 120.00280 * 164.99879 * 10 9 8 12 12 O 1.42099 * 106.40270 * 178.53331 * 11 10 9 13 13 O 1.42097 * 106.40005 * 311.46022 * 11 10 9 14 14 C 1.76207 * 107.21750 * 64.99580 * 11 10 9 15 15 C 1.38638 * 119.74667 * 269.73421 * 14 11 10 16 16 C 1.37613 * 120.24625 * 179.72621 * 15 14 11 17 17 C 1.40716 * 119.74516 * 0.55665 * 16 15 14 18 18 C 1.41396 * 120.24792 * 179.68670 * 17 16 15 19 19 H 1.07992 * 120.00316 * 155.31313 * 18 17 16 20 20 C 1.39953 * 119.99677 * 335.31771 * 18 17 16 21 21 N 1.30824 * 119.99894 * 342.22856 * 20 18 17 22 22 Si 1.86802 * 119.99870 * 162.23343 * 20 18 17 23 23 H 1.48495 * 109.47323 * 94.66056 * 22 20 18 24 24 H 1.48506 * 109.46855 * 214.66248 * 22 20 18 25 25 H 1.48496 * 109.46974 * 334.66185 * 22 20 18 26 26 C 1.40713 * 119.51199 * 359.71525 * 17 16 15 27 27 C 1.37623 * 119.74227 * 359.97438 * 26 17 16 28 28 H 1.09006 * 109.47069 * 270.02344 * 1 2 3 29 29 H 1.09004 * 109.47553 * 30.02044 * 1 2 3 30 30 H 1.09003 * 109.47104 * 150.02260 * 1 2 3 31 31 H 1.08002 * 119.62246 * 0.02562 * 3 2 1 32 32 H 1.08006 * 119.61668 * 179.97438 * 5 4 3 33 33 H 1.07995 * 120.42488 * 179.97438 * 6 5 4 34 34 H 1.08993 * 109.47170 * 204.97538 * 8 7 2 35 35 H 1.08998 * 109.47370 * 324.98156 * 8 7 2 36 36 H 1.09003 * 109.46829 * 299.99686 * 9 8 7 37 37 H 1.08990 * 109.47735 * 59.99908 * 9 8 7 38 38 H 0.97007 * 119.99958 * 344.98949 * 10 9 8 39 39 H 1.08002 * 119.87452 * 359.97161 * 15 14 11 40 40 H 1.08001 * 120.12913 * 180.27441 * 16 15 14 41 41 H 0.97003 * 119.99575 * 179.97438 * 21 20 18 42 42 H 1.08006 * 120.13353 * 179.97438 * 26 17 16 43 43 H 1.08006 * 119.87430 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.2000 0.0005 5 6 4.2256 0.0824 0.0015 6 6 3.5948 -1.1471 0.0016 7 6 2.2089 -1.1954 0.0005 8 6 1.4831 -2.5162 0.0002 9 6 1.1278 -2.9024 -1.4371 10 7 0.4217 -4.1860 -1.4374 11 16 -0.4066 -4.6751 -2.7853 12 8 -0.9434 -5.9558 -2.4837 13 8 -1.2069 -3.5717 -3.1868 14 6 0.7791 -4.9215 -4.0653 15 6 1.1110 -3.8711 -4.9071 16 6 2.0398 -4.0506 -5.9065 17 6 2.6447 -5.3093 -6.0797 18 6 3.5954 -5.5073 -7.1073 19 1 4.3343 -6.2895 -7.0160 20 6 3.5790 -4.6894 -8.2429 21 7 2.5113 -3.9900 -8.5298 22 14 5.0815 -4.5966 -9.3489 23 1 4.9327 -5.5612 -10.4680 24 1 5.2103 -3.2214 -9.8945 25 1 6.2959 -4.9332 -8.5634 26 6 2.2959 -6.3697 -5.2230 27 6 1.3692 -6.1656 -4.2262 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6674 2.1277 0.0004 32 1 5.3046 0.1286 0.0015 33 1 4.1737 -2.0587 0.0020 34 1 2.1242 -3.2831 0.4345 35 1 0.5702 -2.4293 0.5893 36 1 0.4866 -2.1353 -1.8714 37 1 2.0406 -2.9893 -2.0263 38 1 0.4395 -4.7495 -0.6480 39 1 0.6417 -2.9074 -4.7754 40 1 2.3002 -3.2298 -6.5584 41 1 2.5000 -3.4228 -9.3166 42 1 2.7536 -7.3400 -5.3471 43 1 1.1003 -6.9779 -3.5671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167698045.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:05 Heat of formation + Delta-G solvation = -42.835926 kcal Electronic energy + Delta-G solvation = -27218.247135 eV Core-core repulsion = 23354.055443 eV Total energy + Delta-G solvation = -3864.191692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.51142 -37.60450 -36.67181 -36.25490 -35.16868 -34.06797 -33.80075 -32.44920 -30.28811 -29.49779 -29.02532 -27.32004 -25.84694 -23.95140 -22.61586 -21.59590 -21.30523 -21.15046 -18.96870 -17.64683 -17.25176 -16.94530 -16.61265 -16.41774 -15.83316 -15.53770 -15.23557 -14.69074 -14.45595 -14.22277 -14.08818 -13.51832 -13.42728 -13.25188 -12.99272 -12.88611 -12.65718 -12.44734 -12.24770 -12.13732 -12.01920 -11.76779 -11.51259 -11.42618 -11.39679 -11.34538 -11.28947 -11.23524 -10.89242 -10.47358 -9.80095 -9.69521 -9.61163 -9.58239 -9.51445 -9.12306 -9.03366 -7.98868 -7.73609 -7.16555 -4.82789 0.97652 1.03556 1.25090 2.22709 2.85415 2.87483 2.89771 2.94067 3.59522 3.64222 3.69199 4.20493 4.32108 4.45077 4.51738 4.54199 4.75797 4.81431 4.89151 5.05746 5.18945 5.29288 5.30487 5.35340 5.41972 5.54475 5.62787 5.66200 5.81542 5.82542 6.00180 6.03740 6.08449 6.14898 6.23359 6.57751 6.65217 6.68331 6.87614 7.02020 7.21640 7.31477 7.39749 7.60355 7.74072 7.84062 7.94236 8.29063 8.48541 8.62130 9.75002 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.009249 B = 0.003359 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.669311 B = 8334.286882 C =10391.471018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.131 4.131 3 C 0.097 3.903 4 N -0.487 5.487 5 C 0.091 3.909 6 C -0.162 4.162 7 C -0.039 4.039 8 C -0.090 4.090 9 C 0.127 3.873 10 N -1.127 6.127 11 S 2.694 3.306 12 O -0.985 6.985 13 O -0.983 6.983 14 C -0.789 4.789 15 C -0.017 4.017 16 C -0.183 4.183 17 C 0.140 3.860 18 C -0.435 4.435 19 H 0.088 0.912 20 C 0.072 3.928 21 N -0.764 5.764 22 Si 0.916 3.084 23 H -0.266 1.266 24 H -0.271 1.271 25 H -0.256 1.256 26 C -0.239 4.239 27 C 0.003 3.997 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.410 0.590 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.290 0.710 42 H 0.100 0.900 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 6.297 13.850 15.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.133 4.133 3 C -0.060 4.060 4 N -0.195 5.195 5 C -0.065 4.065 6 C -0.181 4.181 7 C -0.047 4.047 8 C -0.128 4.128 9 C 0.000 4.000 10 N -0.883 5.883 11 S 2.793 3.207 12 O -0.976 6.976 13 O -0.973 6.973 14 C -0.885 4.885 15 C -0.037 4.037 16 C -0.203 4.203 17 C 0.136 3.864 18 C -0.462 4.462 19 H 0.106 0.894 20 C -0.150 4.150 21 N -0.386 5.386 22 Si 0.739 3.261 23 H -0.191 1.191 24 H -0.195 1.195 25 H -0.180 1.180 26 C -0.260 4.260 27 C -0.017 4.017 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.171 0.829 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.242 0.758 39 H 0.120 0.880 40 H 0.139 0.861 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.933 7.291 13.486 15.360 hybrid contribution 0.964 -1.020 -0.658 1.550 sum 1.897 6.271 12.828 14.405 Atomic orbital electron populations 1.20858 0.90102 1.04042 1.02660 1.20854 0.97707 0.93608 1.01118 1.22658 0.89932 0.97377 0.96017 1.67658 1.08353 1.31535 1.11941 1.22723 1.00350 0.87661 0.95792 1.22107 0.94504 0.99916 1.01616 1.20064 0.93684 0.94810 0.96183 1.20830 1.00903 0.93536 0.97573 1.21132 0.97553 0.84916 0.96416 1.55774 1.71565 1.29122 1.31885 1.01201 0.74096 0.72531 0.72915 1.93494 1.77923 1.41362 1.84793 1.93484 1.66798 1.54614 1.82422 1.29105 1.32001 1.02964 1.24422 1.20252 0.94562 0.95355 0.93545 1.21333 1.01305 0.97890 0.99764 1.17849 0.88345 0.90637 0.89550 1.19945 1.12301 1.13500 1.00493 0.89434 1.26147 0.97092 0.93194 0.98586 1.69825 1.26722 1.18599 1.23451 0.86151 0.81341 0.78915 0.79683 1.19071 1.19549 1.17988 1.21027 1.04558 0.98212 1.02199 1.20152 0.92778 0.93427 0.95381 0.90847 0.90899 0.90380 0.82906 0.82811 0.84553 0.89723 0.89577 0.90260 0.91079 0.75751 0.87958 0.86058 0.89909 0.88192 0.87822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.30 36.01 0.33 -0.68 16 2 C -0.13 -1.34 5.90 -104.48 -0.62 -1.95 16 3 C 0.10 1.04 10.86 -17.55 -0.19 0.85 16 4 N -0.49 -5.87 10.36 -13.25 -0.14 -6.01 16 5 C 0.09 0.96 11.18 -17.55 -0.20 0.77 16 6 C -0.16 -1.62 9.80 -39.44 -0.39 -2.00 16 7 C -0.04 -0.40 5.17 -104.32 -0.54 -0.94 16 8 C -0.09 -0.84 4.83 -27.88 -0.13 -0.98 16 9 C 0.13 1.57 6.04 -4.04 -0.02 1.55 16 10 N -1.13 -15.18 6.00 -10.61 -0.06 -15.24 16 11 S 2.69 49.89 5.73 -107.50 -0.62 49.27 16 12 O -0.99 -20.26 17.26 -57.17 -0.99 -21.25 16 13 O -0.98 -20.42 16.72 -57.17 -0.96 -21.38 16 14 C -0.79 -16.96 5.97 -39.29 -0.23 -17.19 16 15 C -0.02 -0.38 9.49 -39.66 -0.38 -0.76 16 16 C -0.18 -4.51 8.70 -38.87 -0.34 -4.84 16 17 C 0.14 3.50 5.57 -106.83 -0.60 2.91 16 18 C -0.44 -10.56 9.05 -37.74 -0.34 -10.90 16 19 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 20 C 0.07 1.65 5.14 -17.34 -0.09 1.57 16 21 N -0.76 -18.22 10.97 55.55 0.61 -17.61 16 22 Si 0.92 16.85 29.60 -169.99 -5.03 11.82 16 23 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 24 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 25 H -0.26 -4.67 7.11 56.52 0.40 -4.26 16 26 C -0.24 -5.59 9.80 -38.87 -0.38 -5.97 16 27 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.08 0.73 5.63 -51.93 -0.29 0.43 16 31 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 35 H 0.09 0.71 7.10 -51.93 -0.37 0.34 16 36 H 0.08 1.04 6.58 -51.93 -0.34 0.70 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.41 4.38 8.65 -34.47 -0.30 4.08 16 39 H 0.10 2.16 7.59 -52.49 -0.40 1.76 16 40 H 0.12 3.04 6.18 -52.49 -0.32 2.72 16 41 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 42 H 0.10 2.15 8.06 -52.48 -0.42 1.72 16 43 H 0.10 2.05 7.60 -52.48 -0.40 1.65 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -31.30 374.47 -11.37 -42.67 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.35 Total: 10.98 kcal Atomic # 6 Polarization: -34.42 SS G_CDS: -4.49 Total: -38.90 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.41 Total: -38.87 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.94 Total: -42.63 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: 49.89 SS G_CDS: -0.62 Total: 49.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.30 -11.37 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167698045.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.161 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds