Wall clock time and date at job start Sat Apr 11 2020 07:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00010 * 2 1 4 4 H 1.48500 * 109.46891 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46962 * 300.00066 * 3 2 1 6 6 H 1.48501 * 109.47226 * 59.99823 * 3 2 1 7 7 C 1.37872 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00114 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47191 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47186 * 180.02562 * 11 10 9 13 13 C 1.34776 * 119.99932 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00042 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.00140 * 180.02562 * 13 12 11 16 16 C 1.53868 * 113.05515 * 303.97038 * 15 13 12 17 17 C 1.54843 * 100.85181 * 268.37415 * 16 15 13 18 18 C 1.51200 * 104.37626 * 334.55703 * 17 16 15 19 19 O 1.21300 * 124.78563 * 189.67439 * 18 17 16 20 20 N 1.35331 * 110.43486 * 9.67059 * 18 17 16 21 21 C 1.40948 * 139.86941 * 194.38465 * 20 18 17 22 22 C 1.39904 * 126.88858 * 327.97732 * 21 20 18 23 23 C 1.37758 * 120.76800 * 174.79458 * 22 21 20 24 24 C 1.38312 * 120.81856 * 359.42073 * 23 22 21 25 25 C 1.38395 * 119.39039 * 1.82950 * 24 23 22 26 26 C 1.37998 * 119.82570 * 0.26013 * 25 24 23 27 27 S 1.77721 * 131.95746 * 172.78270 * 26 25 24 28 28 H 0.97005 * 120.00092 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47491 * 60.00096 * 9 7 2 30 30 H 1.08998 * 109.46841 * 299.99679 * 9 7 2 31 31 H 1.09006 * 109.47295 * 59.99922 * 10 9 7 32 32 H 1.09004 * 109.47015 * 300.00030 * 10 9 7 33 33 H 1.08997 * 109.47185 * 59.99659 * 11 10 9 34 34 H 1.09004 * 109.47170 * 299.99941 * 11 10 9 35 35 H 0.97000 * 120.00041 * 0.02562 * 12 11 10 36 36 H 1.08996 * 111.14553 * 26.27106 * 16 15 13 37 37 H 1.09004 * 111.14179 * 150.43924 * 16 15 13 38 38 H 1.09006 * 110.45079 * 93.27151 * 17 16 15 39 39 H 1.08994 * 110.45478 * 215.70638 * 17 16 15 40 40 H 1.07998 * 119.61605 * 354.81196 * 22 21 20 41 41 H 1.08007 * 119.59239 * 179.40439 * 23 22 21 42 42 H 1.08002 * 120.31168 * 181.85089 * 24 23 22 43 43 H 1.07994 * 120.08617 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0018 13 6 1.9829 -7.3713 0.0030 14 8 0.7905 -7.5929 0.0039 15 6 2.9622 -8.5168 0.0042 16 6 3.9552 -8.4619 -1.1699 17 6 3.2038 -9.3078 -2.2270 18 6 2.3122 -10.2189 -1.4141 19 8 1.6825 -11.1528 -1.8643 20 7 2.3158 -9.8459 -0.1132 21 6 1.9392 -10.3419 1.1512 22 6 0.8712 -11.2007 1.4323 23 6 0.6792 -11.6937 2.7043 24 6 1.5442 -11.3613 3.7311 25 6 2.5922 -10.4924 3.4818 26 6 2.7601 -9.9643 2.2180 27 16 3.8609 -8.7199 1.5869 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5566 0.8903 31 1 2.8719 -3.6044 0.8905 32 1 2.8719 -3.6043 -0.8895 33 1 0.8532 -5.0451 -0.8885 34 1 0.8538 -5.0446 0.8914 35 1 3.3859 -5.9234 0.0021 36 1 4.0992 -7.4383 -1.5155 37 1 4.9067 -8.9213 -0.9019 38 1 2.6046 -8.6657 -2.8728 39 1 3.9088 -9.8910 -2.8194 40 1 0.1894 -11.4807 0.6429 41 1 -0.1572 -12.3478 2.9022 42 1 1.4033 -11.7761 4.7183 43 1 3.2740 -10.2249 4.2754 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171504389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:08 Heat of formation + Delta-G solvation = -24.815354 kcal Electronic energy + Delta-G solvation = -27369.366701 eV Core-core repulsion = 23505.956439 eV Total energy + Delta-G solvation = -3863.410262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74272 -39.45680 -39.08261 -36.97195 -35.61734 -33.84560 -33.30419 -31.42037 -31.32690 -29.61005 -28.91425 -26.64486 -24.19595 -23.92523 -23.32009 -22.41646 -20.89719 -20.49589 -20.06626 -18.58104 -18.10639 -17.19136 -16.62829 -16.36813 -16.17455 -15.76888 -15.40748 -15.29485 -14.94973 -14.57983 -14.49794 -14.44656 -14.10549 -13.89660 -13.70712 -13.43022 -13.33579 -12.65521 -12.35950 -12.15417 -12.05955 -11.93973 -11.88291 -11.72419 -11.08337 -10.97017 -10.93194 -10.81850 -10.62959 -10.51059 -10.09758 -10.06661 -9.96039 -9.51250 -9.17310 -9.04434 -8.72561 -8.42216 -7.83233 -6.06470 -4.09862 0.48114 0.78907 0.93997 1.42704 1.89118 2.02956 2.54565 2.91066 3.23530 3.26949 3.34810 3.37858 3.52006 3.68505 4.21393 4.27675 4.32429 4.40765 4.59110 4.67536 4.80410 4.90754 5.00321 5.07163 5.12723 5.24899 5.29649 5.41877 5.50376 5.55945 5.64389 5.77329 5.94693 6.03035 6.10872 6.21604 6.36909 6.48330 6.61171 6.67591 6.89709 7.34880 7.48238 7.57677 7.68857 7.91516 7.98247 8.32251 8.96935 9.54830 11.04805 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002434 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.628085 B =11502.167167 C =12089.243202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.117 3.883 12 N -0.707 5.707 13 C 0.522 3.478 14 O -0.513 6.513 15 C 0.124 3.876 16 C -0.110 4.110 17 C -0.141 4.141 18 C 0.548 3.452 19 O -0.495 6.495 20 N -0.550 5.550 21 C 0.154 3.846 22 C -0.103 4.103 23 C -0.093 4.093 24 C -0.116 4.116 25 C -0.062 4.062 26 C -0.113 4.113 27 S -0.075 6.075 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.401 0.599 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.015 -23.944 2.714 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.005 4.005 12 N -0.358 5.358 13 C 0.300 3.700 14 O -0.388 6.388 15 C -0.076 4.076 16 C -0.149 4.149 17 C -0.182 4.182 18 C 0.337 3.663 19 O -0.367 6.367 20 N -0.278 5.278 21 C 0.057 3.943 22 C -0.125 4.125 23 C -0.114 4.114 24 C -0.137 4.137 25 C -0.085 4.085 26 C -0.227 4.227 27 S 0.169 5.831 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.698 -23.983 2.785 26.019 hybrid contribution -0.372 0.564 -0.319 0.747 sum 9.326 -23.419 2.466 25.328 Atomic orbital electron populations 1.69973 1.06078 1.26649 1.50515 1.25031 0.94854 0.99352 0.95227 0.86527 0.80046 0.83728 0.77636 1.19724 1.20995 1.20977 1.21217 0.93029 0.90845 1.50984 0.92535 1.19033 0.93818 0.90812 0.97718 1.21911 0.99843 0.92962 1.01134 1.21784 0.91677 0.84589 1.02422 1.46027 1.11269 1.04919 1.73633 1.19695 0.88562 0.83605 0.78094 1.90785 1.15378 1.84106 1.48521 1.24708 0.95256 0.87953 0.99686 1.22825 0.97304 1.03904 0.90888 1.22437 0.99123 0.98559 0.98062 1.21220 0.81056 0.84448 0.79533 1.90757 1.43017 1.30055 1.72879 1.46852 1.59214 1.16057 1.05637 1.18143 0.95467 0.98593 0.82118 1.20823 0.95542 0.98004 0.98094 1.20956 0.99456 0.99250 0.91695 1.21183 0.94823 0.98078 0.99617 1.20236 0.98192 0.96938 0.93174 1.21906 0.99479 1.04280 0.97064 1.86453 1.33768 1.47115 1.15743 0.92936 0.96255 0.96224 0.92443 0.92520 0.91322 0.91357 0.76470 0.87040 0.86794 0.86152 0.85704 0.85123 0.84781 0.84470 0.84568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.14 9.11 -34.44 -0.31 -14.45 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.19 5.27 -26.73 -0.14 -2.33 16 11 C 0.12 1.91 5.67 -4.04 -0.02 1.89 16 12 N -0.71 -9.22 5.32 -60.29 -0.32 -9.54 16 13 C 0.52 7.49 6.94 -10.98 -0.08 7.42 16 14 O -0.51 -9.63 16.62 5.55 0.09 -9.53 16 15 C 0.12 1.41 0.80 -67.66 -0.05 1.36 16 16 C -0.11 -0.77 6.30 -25.31 -0.16 -0.93 16 17 C -0.14 -1.09 6.82 -26.67 -0.18 -1.27 16 18 C 0.55 7.03 8.37 -10.49 -0.09 6.94 16 19 O -0.50 -7.91 18.03 5.54 0.10 -7.81 16 20 N -0.55 -7.25 2.77 -100.80 -0.28 -7.53 16 21 C 0.15 2.07 6.59 -82.45 -0.54 1.53 16 22 C -0.10 -1.27 10.05 -39.13 -0.39 -1.66 16 23 C -0.09 -0.86 9.98 -39.73 -0.40 -1.26 16 24 C -0.12 -0.96 10.09 -39.50 -0.40 -1.36 16 25 C -0.06 -0.59 10.05 -39.61 -0.40 -0.98 16 26 C -0.11 -1.34 6.59 -39.08 -0.26 -1.60 16 27 S -0.08 -0.81 22.17 -107.50 -2.38 -3.19 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.40 4.03 8.00 -40.82 -0.33 3.70 16 36 H 0.11 0.57 7.40 -51.93 -0.38 0.19 16 37 H 0.11 0.58 7.83 -51.93 -0.41 0.18 16 38 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 42 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -35.76 378.79 -10.76 -46.52 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -5.73 Total: -0.27 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -3.66 Total: -4.77 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.14 Total: -42.66 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.19 Total: -17.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.38 Total: -3.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.76 -10.76 -46.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171504389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.701 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds