Wall clock time and date at job start Sat Apr 11 2020 07:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99870 * 2 1 4 4 H 1.48498 * 109.47055 * 270.00372 * 3 2 1 5 5 H 1.48501 * 109.46986 * 30.00481 * 3 2 1 6 6 H 1.48498 * 109.46789 * 150.00388 * 3 2 1 7 7 C 1.37880 * 120.00476 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00535 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99262 * 359.97438 * 7 2 1 10 10 C 1.53010 * 109.46710 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46850 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46820 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00018 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99849 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00209 * 179.97438 * 13 12 11 16 16 C 1.53853 * 113.04818 * 56.01334 * 15 13 12 17 17 C 1.54887 * 100.60512 * 90.04228 * 16 15 13 18 18 C 1.51224 * 104.37462 * 25.22884 * 17 16 15 19 19 O 1.21298 * 124.76044 * 172.27711 * 18 17 16 20 20 N 1.35343 * 110.46869 * 352.25220 * 18 17 16 21 21 C 1.40819 * 140.20837 * 164.70850 * 20 18 17 22 22 C 1.40141 * 126.29196 * 26.36994 * 21 20 18 23 23 C 1.37696 * 120.88005 * 181.21587 * 22 21 20 24 24 C 1.38303 * 120.89298 * 359.97438 * 23 22 21 25 25 C 1.38388 * 119.28651 * 359.46676 * 24 23 22 26 26 C 1.37956 * 119.88273 * 0.02562 * 25 24 23 27 27 S 1.77814 * 132.00495 * 182.15910 * 26 25 24 28 28 H 0.96995 * 120.00244 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47829 * 60.00331 * 9 7 2 30 30 H 1.09003 * 109.47443 * 299.99378 * 9 7 2 31 31 H 1.08996 * 109.46890 * 60.00066 * 10 9 7 32 32 H 1.08993 * 109.46905 * 300.00095 * 10 9 7 33 33 H 1.08996 * 109.46923 * 59.99930 * 11 10 9 34 34 H 1.08998 * 109.46903 * 299.99682 * 11 10 9 35 35 H 0.96999 * 119.99859 * 359.97438 * 12 11 10 36 36 H 1.09004 * 111.19338 * 332.20279 * 16 15 13 37 37 H 1.09002 * 111.18648 * 207.88140 * 16 15 13 38 38 H 1.09007 * 110.45127 * 143.95129 * 17 16 15 39 39 H 1.09001 * 110.44934 * 266.37972 * 17 16 15 40 40 H 1.07999 * 119.56188 * 1.21475 * 22 21 20 41 41 H 1.07998 * 119.54984 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.35356 * 179.44961 * 24 23 22 43 43 H 1.07997 * 120.05545 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4324 -6.1006 -0.0005 13 6 1.9832 -7.3713 -0.0006 14 8 0.7908 -7.5929 0.0003 15 6 2.9625 -8.5167 -0.0018 16 6 3.9564 -8.4607 1.1712 17 6 3.1822 -9.2719 2.2397 18 6 2.2692 -10.1727 1.4386 19 8 1.5902 -11.0620 1.9069 20 7 2.3159 -9.8469 0.1257 21 6 1.9608 -10.3706 -1.1323 22 6 0.9393 -11.2955 -1.3875 23 6 0.7032 -11.7532 -2.6645 24 6 1.4672 -11.3120 -3.7296 25 6 2.4742 -10.3898 -3.5043 26 6 2.7051 -9.9226 -2.2270 27 16 3.8531 -8.7247 -1.5876 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8720 -3.6043 -0.8905 33 1 0.8534 -5.0450 -0.8896 34 1 0.8540 -5.0445 0.8904 35 1 3.3860 -5.9233 -0.0016 36 1 4.1216 -7.4343 1.4991 37 1 4.8977 -8.9462 0.9136 38 1 3.8714 -9.8654 2.8406 39 1 2.6001 -8.6053 2.8761 40 1 0.3292 -11.6541 -0.5717 41 1 -0.0895 -12.4662 -2.8367 42 1 1.2802 -11.6835 -4.7263 43 1 3.0781 -10.0366 -4.3270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171504392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:10 Heat of formation + Delta-G solvation = -24.799866 kcal Electronic energy + Delta-G solvation = -27382.339760 eV Core-core repulsion = 23518.930170 eV Total energy + Delta-G solvation = -3863.409590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.75434 -39.45218 -39.07979 -36.97685 -35.61836 -33.84859 -33.30474 -31.42290 -31.32053 -29.61298 -28.89919 -26.64572 -24.23591 -23.93439 -23.31922 -22.37866 -20.89155 -20.48788 -20.06090 -18.59511 -18.11380 -17.18187 -16.62558 -16.37283 -16.17218 -15.80144 -15.38566 -15.29724 -14.90476 -14.59972 -14.50394 -14.45241 -14.07618 -13.90524 -13.70390 -13.43473 -13.34115 -12.66322 -12.35075 -12.15363 -12.05481 -11.94227 -11.88661 -11.71851 -11.10412 -10.97122 -10.94490 -10.81789 -10.65248 -10.51668 -10.10503 -10.04854 -9.95613 -9.50876 -9.18668 -9.04566 -8.70154 -8.41774 -7.83006 -6.06206 -4.09709 0.47854 0.81241 0.94729 1.42213 1.86932 2.04019 2.54248 2.90825 3.25234 3.27932 3.34645 3.36917 3.52271 3.66586 4.21098 4.27168 4.31288 4.40829 4.58772 4.67061 4.80296 4.90268 5.00244 5.06887 5.12899 5.24618 5.29782 5.42401 5.49995 5.55832 5.64458 5.78569 5.95157 6.03095 6.11466 6.21610 6.37405 6.48423 6.61147 6.67571 6.89769 7.34773 7.47337 7.57590 7.68993 7.91629 7.98136 8.32363 8.96887 9.54896 11.05045 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.002441 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.418954 B =11466.235114 C =12065.746914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.117 3.883 12 N -0.707 5.707 13 C 0.521 3.479 14 O -0.513 6.513 15 C 0.123 3.877 16 C -0.109 4.109 17 C -0.141 4.141 18 C 0.548 3.452 19 O -0.494 6.494 20 N -0.550 5.550 21 C 0.161 3.839 22 C -0.110 4.110 23 C -0.089 4.089 24 C -0.120 4.120 25 C -0.057 4.057 26 C -0.117 4.117 27 S -0.075 6.075 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.401 0.599 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.075 -24.001 -2.696 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.358 5.358 13 C 0.299 3.701 14 O -0.388 6.388 15 C -0.077 4.077 16 C -0.149 4.149 17 C -0.182 4.182 18 C 0.337 3.663 19 O -0.365 6.365 20 N -0.277 5.277 21 C 0.064 3.936 22 C -0.132 4.132 23 C -0.110 4.110 24 C -0.141 4.141 25 C -0.081 4.081 26 C -0.232 4.232 27 S 0.169 5.831 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.235 0.765 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.750 -24.051 -2.747 26.097 hybrid contribution -0.375 0.586 0.304 0.759 sum 9.376 -23.465 -2.443 25.386 Atomic orbital electron populations 1.69957 1.06083 1.26771 1.50410 1.25029 0.94849 0.99335 0.95212 0.86581 0.79795 0.83406 0.78137 1.20626 1.21200 1.19866 1.21179 0.92994 0.90858 1.51134 0.92583 1.19029 0.93809 0.90792 0.97711 1.21910 0.99847 0.92959 1.01135 1.21785 0.91678 0.84588 1.02422 1.46022 1.11275 1.04901 1.73612 1.19716 0.88580 0.83655 0.78128 1.90788 1.15394 1.84114 1.48524 1.24764 0.95286 0.87869 0.99803 1.22813 0.97167 1.04108 0.90765 1.22458 0.98681 0.98958 0.98110 1.21237 0.81561 0.83904 0.79566 1.90753 1.40782 1.32377 1.72618 1.46866 1.59574 1.16208 1.05097 1.18157 0.95971 0.97456 0.82014 1.20869 0.95869 0.98209 0.98256 1.20937 0.99337 0.99224 0.91491 1.21173 0.95794 0.97609 0.99492 1.20228 0.97800 0.96846 0.93227 1.21775 1.00772 1.04439 0.96170 1.86485 1.30465 1.51883 1.14267 0.92872 0.96236 0.96257 0.92524 0.92433 0.91361 0.91320 0.76457 0.87033 0.86807 0.85691 0.86139 0.85114 0.84822 0.84463 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.19 5.27 -26.73 -0.14 -2.33 16 11 C 0.12 1.92 5.67 -4.04 -0.02 1.90 16 12 N -0.71 -9.24 5.33 -60.29 -0.32 -9.56 16 13 C 0.52 7.50 6.94 -10.99 -0.08 7.43 16 14 O -0.51 -9.69 16.67 5.56 0.09 -9.60 16 15 C 0.12 1.40 0.77 -67.56 -0.05 1.34 16 16 C -0.11 -0.76 6.30 -25.29 -0.16 -0.92 16 17 C -0.14 -1.10 6.81 -26.63 -0.18 -1.28 16 18 C 0.55 7.05 8.35 -10.47 -0.09 6.96 16 19 O -0.49 -7.89 18.03 5.54 0.10 -7.79 16 20 N -0.55 -7.25 2.78 -100.68 -0.28 -7.53 16 21 C 0.16 2.17 6.69 -82.44 -0.55 1.61 16 22 C -0.11 -1.35 10.05 -39.07 -0.39 -1.74 16 23 C -0.09 -0.83 9.97 -39.76 -0.40 -1.23 16 24 C -0.12 -0.99 10.10 -39.50 -0.40 -1.39 16 25 C -0.06 -0.55 10.05 -39.63 -0.40 -0.95 16 26 C -0.12 -1.40 6.58 -39.12 -0.26 -1.65 16 27 S -0.07 -0.80 22.19 -107.50 -2.39 -3.19 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.40 4.03 7.98 -40.82 -0.33 3.71 16 36 H 0.11 0.57 7.40 -51.93 -0.38 0.19 16 37 H 0.11 0.58 7.86 -51.93 -0.41 0.17 16 38 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -35.77 378.90 -10.77 -46.54 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.73 Total: -0.20 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -3.67 Total: -4.78 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.13 Total: -42.71 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: 0.19 Total: -17.40 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.39 Total: -3.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.77 -10.77 -46.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171504392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.742 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds