Wall clock time and date at job start Sat Apr 11 2020 07:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99870 * 2 1 4 4 H 1.48498 * 109.47055 * 270.00372 * 3 2 1 5 5 H 1.48501 * 109.46986 * 30.00481 * 3 2 1 6 6 H 1.48498 * 109.46789 * 150.00388 * 3 2 1 7 7 C 1.37880 * 120.00476 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00535 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99262 * 359.97438 * 7 2 1 10 10 C 1.53010 * 109.46710 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46850 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46820 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00018 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99849 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00209 * 179.97438 * 13 12 11 16 16 C 1.53853 * 113.04818 * 56.01334 * 15 13 12 17 17 C 1.54887 * 100.60512 * 90.04228 * 16 15 13 18 18 C 1.51224 * 104.37462 * 25.22884 * 17 16 15 19 19 O 1.21298 * 124.76044 * 172.27711 * 18 17 16 20 20 N 1.35343 * 110.46869 * 352.25220 * 18 17 16 21 21 C 1.40819 * 140.20837 * 164.70850 * 20 18 17 22 22 C 1.40141 * 126.29196 * 26.36994 * 21 20 18 23 23 C 1.37696 * 120.88005 * 181.21587 * 22 21 20 24 24 C 1.38303 * 120.89298 * 359.97438 * 23 22 21 25 25 C 1.38388 * 119.28651 * 359.46676 * 24 23 22 26 26 C 1.37956 * 119.88273 * 0.02562 * 25 24 23 27 27 S 1.77814 * 132.00495 * 182.15910 * 26 25 24 28 28 H 0.96995 * 120.00244 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47829 * 60.00331 * 9 7 2 30 30 H 1.09003 * 109.47443 * 299.99378 * 9 7 2 31 31 H 1.08996 * 109.46890 * 60.00066 * 10 9 7 32 32 H 1.08993 * 109.46905 * 300.00095 * 10 9 7 33 33 H 1.08996 * 109.46923 * 59.99930 * 11 10 9 34 34 H 1.08998 * 109.46903 * 299.99682 * 11 10 9 35 35 H 0.96999 * 119.99859 * 359.97438 * 12 11 10 36 36 H 1.09004 * 111.19338 * 332.20279 * 16 15 13 37 37 H 1.09002 * 111.18648 * 207.88140 * 16 15 13 38 38 H 1.09007 * 110.45127 * 143.95129 * 17 16 15 39 39 H 1.09001 * 110.44934 * 266.37972 * 17 16 15 40 40 H 1.07999 * 119.56188 * 1.21475 * 22 21 20 41 41 H 1.07998 * 119.54984 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.35356 * 179.44961 * 24 23 22 43 43 H 1.07997 * 120.05545 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4324 -6.1006 -0.0005 13 6 1.9832 -7.3713 -0.0006 14 8 0.7908 -7.5929 0.0003 15 6 2.9625 -8.5167 -0.0018 16 6 3.9564 -8.4607 1.1712 17 6 3.1822 -9.2719 2.2397 18 6 2.2692 -10.1727 1.4386 19 8 1.5902 -11.0620 1.9069 20 7 2.3159 -9.8469 0.1257 21 6 1.9608 -10.3706 -1.1323 22 6 0.9393 -11.2955 -1.3875 23 6 0.7032 -11.7532 -2.6645 24 6 1.4672 -11.3120 -3.7296 25 6 2.4742 -10.3898 -3.5043 26 6 2.7051 -9.9226 -2.2270 27 16 3.8531 -8.7247 -1.5876 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.8720 -3.6043 0.8894 32 1 2.8720 -3.6043 -0.8905 33 1 0.8534 -5.0450 -0.8896 34 1 0.8540 -5.0445 0.8904 35 1 3.3860 -5.9233 -0.0016 36 1 4.1216 -7.4343 1.4991 37 1 4.8977 -8.9462 0.9136 38 1 3.8714 -9.8654 2.8406 39 1 2.6001 -8.6053 2.8761 40 1 0.3292 -11.6541 -0.5717 41 1 -0.0895 -12.4662 -2.8367 42 1 1.2802 -11.6835 -4.7263 43 1 3.0781 -10.0366 -4.3270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171504392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:09 Heat of formation + Delta-G solvation = -48.224070 kcal Electronic energy + Delta-G solvation = -27383.355510 eV Core-core repulsion = 23518.930170 eV Total energy + Delta-G solvation = -3864.425340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.65977 -40.56042 -39.94783 -37.96763 -37.05642 -35.33544 -34.40224 -33.09871 -32.12655 -30.42396 -29.98751 -28.24251 -25.43433 -24.74076 -24.50000 -23.41811 -22.37419 -21.54375 -21.06211 -19.48387 -19.17533 -18.47527 -17.99210 -17.46727 -17.27866 -16.76915 -16.55549 -16.46198 -16.20516 -15.78046 -15.56320 -15.48443 -15.04617 -14.99146 -14.67116 -14.31660 -14.25747 -13.99615 -13.77215 -13.58117 -13.38058 -12.88467 -12.75738 -12.68533 -12.58183 -12.48281 -12.38525 -12.05309 -11.80334 -11.67460 -11.57446 -11.43631 -11.22958 -10.98346 -10.87149 -10.53951 -10.31167 -9.54218 -8.66040 -8.18050 -6.29247 -0.36251 -0.02341 0.14157 0.56805 0.95478 1.17992 1.43814 1.44626 1.46165 1.55502 1.84176 2.43509 2.47211 2.73073 2.97947 3.16377 3.29618 3.51647 3.59311 3.94640 4.01796 4.06767 4.13670 4.18150 4.19393 4.27281 4.49507 4.53224 4.61363 4.67327 4.74097 4.80917 4.88431 4.93259 5.01398 5.18253 5.21502 5.26810 5.35083 5.53819 5.59543 5.72146 5.79418 5.86022 6.21605 6.27184 6.54174 6.88908 6.89997 7.40683 8.94044 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.002441 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.418954 B =11466.235114 C =12065.746914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.258 1.258 7 C -0.538 4.538 8 H 0.070 0.930 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.131 3.869 12 N -0.689 5.689 13 C 0.520 3.480 14 O -0.566 6.566 15 C 0.118 3.882 16 C -0.099 4.099 17 C -0.133 4.133 18 C 0.531 3.469 19 O -0.542 6.542 20 N -0.559 5.559 21 C 0.122 3.878 22 C -0.138 4.138 23 C -0.088 4.088 24 C -0.109 4.109 25 C -0.060 4.060 26 C -0.141 4.141 27 S -0.047 6.047 28 H 0.262 0.738 29 H -0.011 1.011 30 H -0.008 1.008 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.420 0.580 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.159 0.841 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.160 0.840 42 H 0.177 0.823 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.464 -23.842 -3.596 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.576 4.576 8 H 0.088 0.912 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.008 3.992 12 N -0.342 5.342 13 C 0.301 3.699 14 O -0.445 6.445 15 C -0.082 4.082 16 C -0.138 4.138 17 C -0.173 4.173 18 C 0.324 3.676 19 O -0.417 6.417 20 N -0.286 5.286 21 C 0.025 3.975 22 C -0.160 4.160 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.084 4.084 26 C -0.255 4.255 27 S 0.196 5.804 28 H 0.071 0.929 29 H 0.008 0.992 30 H 0.011 0.989 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.258 0.742 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.177 0.823 39 H 0.145 0.855 40 H 0.128 0.872 41 H 0.178 0.822 42 H 0.194 0.806 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 13.213 -23.889 -3.667 27.545 hybrid contribution -1.524 0.463 0.468 1.660 sum 11.689 -23.426 -3.199 26.375 Atomic orbital electron populations 1.70110 1.08001 1.27736 1.51870 1.26016 0.95684 1.03558 0.94891 0.85441 0.78796 0.78383 0.78395 1.19965 1.21320 1.18148 1.21688 0.93864 0.91851 1.50160 0.91205 1.18946 0.94478 0.93038 0.95019 1.21608 0.98425 0.91062 1.02748 1.21351 0.91762 0.85084 1.01018 1.45702 1.11726 1.03823 1.72927 1.20299 0.88489 0.84467 0.76659 1.90768 1.17998 1.84960 1.50796 1.24805 0.95309 0.85738 1.02334 1.23053 0.96709 1.05864 0.88138 1.22612 0.98279 0.98500 0.97939 1.22349 0.81504 0.83852 0.79940 1.90709 1.42948 1.34670 1.73417 1.47120 1.59511 1.16714 1.05271 1.18580 0.97235 0.98734 0.82914 1.21008 0.96367 0.99384 0.99220 1.21303 0.99870 0.99080 0.90546 1.21654 0.94306 0.96223 1.00743 1.20714 0.98090 0.96535 0.93035 1.22156 1.01446 1.05233 0.96695 1.86224 1.29338 1.51319 1.13507 0.92906 0.99215 0.98915 0.90458 0.91042 0.93349 0.92517 0.74186 0.84440 0.84089 0.82305 0.85538 0.87175 0.82240 0.80611 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.41 13.29 21.45 0.28 -56.12 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 42.71 29.54 68.60 2.03 44.73 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.54 -28.88 9.11 25.60 0.23 -28.65 16 8 H 0.07 3.48 7.74 -2.92 -0.02 3.46 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.54 5.27 30.60 0.16 -3.37 16 11 C 0.13 4.29 5.67 86.38 0.49 4.78 16 12 N -0.69 -17.06 5.33 -463.06 -2.47 -19.52 16 13 C 0.52 14.84 6.94 87.66 0.61 15.45 16 14 O -0.57 -22.28 16.67 -3.04 -0.05 -22.34 16 15 C 0.12 2.55 0.77 44.16 0.03 2.58 16 16 C -0.10 -1.08 6.30 31.53 0.20 -0.89 16 17 C -0.13 -1.83 6.81 30.66 0.21 -1.62 16 18 C 0.53 14.06 8.35 87.73 0.73 14.80 16 19 O -0.54 -18.54 18.03 -3.09 -0.06 -18.59 16 20 N -0.56 -15.04 2.78 -590.52 -1.64 -16.69 16 21 C 0.12 3.39 6.69 38.52 0.26 3.65 16 22 C -0.14 -3.60 10.05 22.60 0.23 -3.37 16 23 C -0.09 -1.58 9.97 22.16 0.22 -1.36 16 24 C -0.11 -1.56 10.10 22.32 0.23 -1.33 16 25 C -0.06 -1.05 10.05 22.24 0.22 -0.82 16 26 C -0.14 -3.27 6.58 22.57 0.15 -3.12 16 27 S -0.05 -0.93 22.19 -56.49 -1.25 -2.18 16 28 H 0.26 14.91 8.31 -92.71 -0.77 14.13 16 29 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.42 7.16 7.98 -92.71 -0.74 6.42 16 36 H 0.14 0.81 7.40 -2.38 -0.02 0.79 16 37 H 0.14 0.84 7.86 -2.39 -0.02 0.83 16 38 H 0.16 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.11 3.18 8.06 -2.91 -0.02 3.15 16 41 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -83.43 378.90 1.72 -81.70 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.30 Total: 10.76 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 4.58 Total: -1.75 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -3.83 Total: -92.34 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.11 Total: -40.93 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -1.25 Total: -2.18 kcal Total: -83.43 1.72 -81.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171504392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.480 kcal (2) G-P(sol) polarization free energy of solvation -83.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds