Wall clock time and date at job start Sat Apr 11 2020 07:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99734 * 2 1 4 4 H 1.48490 * 109.47133 * 269.99852 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00060 * 3 2 1 6 6 H 1.48499 * 109.46762 * 149.99925 * 3 2 1 7 7 C 1.37876 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00514 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99428 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46484 * 179.97438 * 9 7 2 11 11 S 1.81408 * 109.46779 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54232 * 68.37544 * 11 10 9 13 13 O 1.42101 * 110.54111 * 291.62177 * 11 10 9 14 14 N 1.65595 * 104.44997 * 179.97438 * 11 10 9 15 15 C 1.46508 * 119.99738 * 64.99972 * 14 11 10 16 16 H 1.08998 * 109.47338 * 334.99765 * 15 14 11 17 17 C 1.50708 * 109.46767 * 215.00217 * 15 14 11 18 18 C 1.38236 * 119.99756 * 319.72300 * 17 15 14 19 19 C 1.38234 * 119.99857 * 179.78930 * 18 17 15 20 20 C 1.38237 * 119.99819 * 0.46632 * 19 18 17 21 21 C 1.38230 * 120.00165 * 359.77181 * 20 19 18 22 22 C 1.38227 * 119.99931 * 140.00247 * 17 15 14 23 23 C 1.50691 * 109.47121 * 95.00405 * 15 14 11 24 24 C 1.38672 * 120.41848 * 219.97887 * 23 15 14 25 25 C 1.38628 * 118.42475 * 180.02562 * 24 23 15 26 26 C 1.38223 * 119.16031 * 359.97438 * 25 24 23 27 27 N 1.31856 * 120.76457 * 0.02562 * 26 25 24 28 28 C 1.31884 * 121.72497 * 359.97438 * 27 26 25 29 29 H 0.96999 * 119.99949 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47263 * 59.99989 * 9 7 2 31 31 H 1.09004 * 109.47296 * 299.99420 * 9 7 2 32 32 H 1.09000 * 109.47192 * 60.00176 * 10 9 7 33 33 H 1.08997 * 109.47375 * 299.99603 * 10 9 7 34 34 H 0.97002 * 120.00090 * 245.00293 * 14 11 10 35 35 H 1.08000 * 120.00182 * 0.02562 * 18 17 15 36 36 H 1.07998 * 120.00613 * 180.25391 * 19 18 17 37 37 H 1.08000 * 120.00016 * 179.78697 * 20 19 18 38 38 H 1.08003 * 120.00548 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.00271 * 359.97438 * 22 17 15 40 40 H 1.08005 * 120.78668 * 0.03773 * 24 23 15 41 41 H 1.07996 * 120.42146 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.62014 * 180.02562 * 26 25 24 43 43 H 1.08001 * 119.62224 * 179.72558 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6640 -5.4200 -1.2354 13 8 0.6648 -5.4193 1.2386 14 7 2.5205 -6.3927 0.0005 15 6 3.4197 -6.5227 1.1498 16 1 3.4806 -5.5687 1.6734 17 6 4.7920 -6.9215 0.6712 18 6 4.9272 -7.8502 -0.3438 19 6 6.1858 -8.2127 -0.7857 20 6 7.3094 -7.6538 -0.2061 21 6 7.1744 -6.7288 0.8122 22 6 5.9156 -6.3629 1.2512 23 6 2.8885 -7.5768 2.0865 24 6 2.9495 -7.3913 3.4594 25 6 2.4491 -8.3879 4.2829 26 6 1.9093 -9.5252 3.7122 27 7 1.8677 -9.6678 2.4020 28 6 2.3343 -8.7406 1.5884 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8904 32 1 2.8720 -3.6042 0.8905 33 1 2.8720 -3.6043 -0.8894 34 1 2.6176 -6.9858 -0.7609 35 1 4.0494 -8.2896 -0.7940 36 1 6.2914 -8.9352 -1.5815 37 1 8.2929 -7.9396 -0.5490 38 1 8.0522 -6.2917 1.2648 39 1 5.8100 -5.6404 2.0470 40 1 3.3766 -6.4916 3.8772 41 1 2.4806 -8.2772 5.3567 42 1 1.5169 -10.3062 4.3467 43 1 2.2871 -8.8946 0.5205 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171768303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:18 Heat of formation + Delta-G solvation = -16.225635 kcal Electronic energy + Delta-G solvation = -27780.763717 eV Core-core repulsion = 23917.725934 eV Total energy + Delta-G solvation = -3863.037783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.63829 -39.32912 -36.70085 -36.12588 -35.46606 -33.93446 -32.54268 -31.35227 -31.22079 -31.03744 -30.71073 -26.18729 -25.65024 -23.80172 -22.86968 -22.70718 -21.68632 -21.12821 -19.03420 -17.88420 -17.41766 -17.18350 -16.56971 -16.41881 -15.97913 -15.66229 -15.30866 -15.16683 -14.94475 -14.59391 -14.40556 -13.95152 -13.85007 -13.60951 -13.43346 -13.14644 -13.04071 -12.72090 -12.55364 -12.12291 -11.79916 -11.73618 -11.62750 -11.55472 -11.47681 -11.27323 -11.10699 -10.99449 -10.47452 -10.42389 -10.05734 -9.86764 -9.70308 -9.52003 -9.23187 -9.15249 -9.04583 -8.89272 -8.53087 -6.15102 -4.20976 0.66230 0.93939 1.14336 1.17020 1.25081 3.00653 3.24067 3.30438 3.32733 3.53333 3.71616 4.15418 4.28181 4.34707 4.45087 4.48541 4.60978 4.71593 4.74538 4.77595 4.83958 4.89699 4.93813 5.04894 5.20151 5.22418 5.27511 5.37846 5.51110 5.57716 5.64529 5.70221 5.75762 5.80459 6.00780 6.11376 6.20892 6.27767 6.35073 6.43454 6.58792 6.73664 6.90868 7.26238 7.31998 7.77620 7.88701 8.13998 8.82409 9.44016 10.95905 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003515 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.008778 B = 7963.571265 C = 9195.055149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.588 4.588 11 S 2.586 3.414 12 O -0.963 6.963 13 O -0.958 6.958 14 N -1.120 6.120 15 C 0.243 3.757 16 H 0.105 0.895 17 C -0.084 4.084 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.106 4.106 23 C -0.138 4.138 24 C -0.059 4.059 25 C -0.170 4.170 26 C 0.094 3.906 27 N -0.485 5.485 28 C 0.119 3.881 29 H 0.265 0.735 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.413 0.587 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.154 0.846 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.849 -18.126 4.723 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.684 3.316 12 O -0.953 6.953 13 O -0.948 6.948 14 N -0.875 5.875 15 C 0.134 3.866 16 H 0.123 0.877 17 C -0.085 4.085 18 C -0.124 4.124 19 C -0.135 4.135 20 C -0.137 4.137 21 C -0.134 4.134 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.085 4.085 25 C -0.190 4.190 26 C -0.062 4.062 27 N -0.193 5.193 28 C -0.038 4.038 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.248 0.752 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.171 0.829 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.331 -18.867 4.521 22.988 hybrid contribution 1.434 1.821 0.025 2.318 sum 13.765 -17.046 4.546 22.376 Atomic orbital electron populations 1.69953 1.06123 1.27238 1.49464 1.25065 0.94962 0.99538 0.94869 0.86473 0.79700 0.82868 0.78271 1.20446 1.20989 1.19751 1.20986 0.93048 0.89704 1.52277 0.92017 1.18969 0.92654 0.90514 0.98931 1.30455 1.13722 1.17902 1.10118 1.05844 0.74707 0.76661 0.74399 1.93564 1.71277 1.85278 1.45199 1.93571 1.71042 1.84792 1.45363 1.56115 1.52406 1.52512 1.26472 1.18299 0.85958 0.97316 0.85030 0.87715 1.19774 0.93657 0.97873 0.97227 1.20919 0.97680 0.97085 0.96735 1.21129 0.92370 1.00026 0.99938 1.21191 0.98687 0.97155 0.96691 1.21139 0.97234 0.97763 0.97287 1.21040 0.91905 0.99669 0.99858 1.21030 1.00942 0.97365 0.94799 1.21439 0.95816 0.98761 0.92492 1.22093 1.00486 0.95201 1.01234 1.22759 0.95576 0.96603 0.91300 1.67691 1.15817 1.30801 1.05038 1.22422 0.92931 0.88766 0.99698 0.92495 0.94832 0.94794 0.86428 0.85892 0.75222 0.86014 0.85878 0.86084 0.85813 0.85519 0.84533 0.84642 0.82878 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.52 -14.14 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.59 -10.89 5.90 37.16 0.22 -10.67 16 11 S 2.59 45.25 5.38 -107.50 -0.58 44.67 16 12 O -0.96 -19.75 18.08 -57.54 -1.04 -20.79 16 13 O -0.96 -19.44 17.78 -57.54 -1.02 -20.46 16 14 N -1.12 -14.10 4.63 -6.88 -0.03 -14.13 16 15 C 0.24 2.76 2.49 -70.23 -0.18 2.58 16 16 H 0.11 1.10 6.90 -51.93 -0.36 0.74 16 17 C -0.08 -0.84 4.94 -104.62 -0.52 -1.36 16 18 C -0.11 -0.99 8.96 -39.58 -0.35 -1.34 16 19 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 20 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 21 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 22 C -0.11 -0.98 9.67 -39.58 -0.38 -1.36 16 23 C -0.14 -1.67 4.91 -104.49 -0.51 -2.19 16 24 C -0.06 -0.65 9.82 -39.28 -0.39 -1.03 16 25 C -0.17 -1.72 10.11 -39.44 -0.40 -2.12 16 26 C 0.09 1.05 11.18 -17.55 -0.20 0.85 16 27 N -0.49 -6.48 10.36 -13.25 -0.14 -6.62 16 28 C 0.12 1.53 10.30 -17.55 -0.18 1.35 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.12 1.89 7.44 -51.92 -0.39 1.50 16 33 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 34 H 0.41 4.30 6.88 -34.47 -0.24 4.06 16 35 H 0.12 0.97 6.38 -52.49 -0.34 0.64 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.13 0.97 8.04 -52.48 -0.42 0.55 16 40 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 43 H 0.15 1.65 7.14 -52.49 -0.37 1.28 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -36.68 379.95 -11.46 -48.14 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.46 Total: 4.84 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: -4.63 Total: -31.79 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.57 Total: -46.23 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -2.06 Total: -41.25 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 45.25 SS G_CDS: -0.58 Total: 44.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.68 -11.46 -48.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171768303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.914 kcal (2) G-P(sol) polarization free energy of solvation -36.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds