Wall clock time and date at job start Sat Apr 11 2020 07:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99734 * 2 1 4 4 H 1.48490 * 109.47133 * 269.99852 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00060 * 3 2 1 6 6 H 1.48499 * 109.46762 * 149.99925 * 3 2 1 7 7 C 1.37876 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00514 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99428 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46484 * 179.97438 * 9 7 2 11 11 S 1.81408 * 109.46779 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54232 * 68.37544 * 11 10 9 13 13 O 1.42101 * 110.54111 * 291.62177 * 11 10 9 14 14 N 1.65595 * 104.44997 * 179.97438 * 11 10 9 15 15 C 1.46508 * 119.99738 * 64.99972 * 14 11 10 16 16 H 1.08998 * 109.47338 * 334.99765 * 15 14 11 17 17 C 1.50708 * 109.46767 * 215.00217 * 15 14 11 18 18 C 1.38236 * 119.99756 * 319.72300 * 17 15 14 19 19 C 1.38234 * 119.99857 * 179.78930 * 18 17 15 20 20 C 1.38237 * 119.99819 * 0.46632 * 19 18 17 21 21 C 1.38230 * 120.00165 * 359.77181 * 20 19 18 22 22 C 1.38227 * 119.99931 * 140.00247 * 17 15 14 23 23 C 1.50691 * 109.47121 * 95.00405 * 15 14 11 24 24 C 1.38672 * 120.41848 * 219.97887 * 23 15 14 25 25 C 1.38628 * 118.42475 * 180.02562 * 24 23 15 26 26 C 1.38223 * 119.16031 * 359.97438 * 25 24 23 27 27 N 1.31856 * 120.76457 * 0.02562 * 26 25 24 28 28 C 1.31884 * 121.72497 * 359.97438 * 27 26 25 29 29 H 0.96999 * 119.99949 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47263 * 59.99989 * 9 7 2 31 31 H 1.09004 * 109.47296 * 299.99420 * 9 7 2 32 32 H 1.09000 * 109.47192 * 60.00176 * 10 9 7 33 33 H 1.08997 * 109.47375 * 299.99603 * 10 9 7 34 34 H 0.97002 * 120.00090 * 245.00293 * 14 11 10 35 35 H 1.08000 * 120.00182 * 0.02562 * 18 17 15 36 36 H 1.07998 * 120.00613 * 180.25391 * 19 18 17 37 37 H 1.08000 * 120.00016 * 179.78697 * 20 19 18 38 38 H 1.08003 * 120.00548 * 180.02562 * 21 20 19 39 39 H 1.08004 * 120.00271 * 359.97438 * 22 17 15 40 40 H 1.08005 * 120.78668 * 0.03773 * 24 23 15 41 41 H 1.07996 * 120.42146 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.62014 * 180.02562 * 26 25 24 43 43 H 1.08001 * 119.62224 * 179.72558 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6640 -5.4200 -1.2354 13 8 0.6648 -5.4193 1.2386 14 7 2.5205 -6.3927 0.0005 15 6 3.4197 -6.5227 1.1498 16 1 3.4806 -5.5687 1.6734 17 6 4.7920 -6.9215 0.6712 18 6 4.9272 -7.8502 -0.3438 19 6 6.1858 -8.2127 -0.7857 20 6 7.3094 -7.6538 -0.2061 21 6 7.1744 -6.7288 0.8122 22 6 5.9156 -6.3629 1.2512 23 6 2.8885 -7.5768 2.0865 24 6 2.9495 -7.3913 3.4594 25 6 2.4491 -8.3879 4.2829 26 6 1.9093 -9.5252 3.7122 27 7 1.8677 -9.6678 2.4020 28 6 2.3343 -8.7406 1.5884 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8904 32 1 2.8720 -3.6042 0.8905 33 1 2.8720 -3.6043 -0.8894 34 1 2.6176 -6.9858 -0.7609 35 1 4.0494 -8.2896 -0.7940 36 1 6.2914 -8.9352 -1.5815 37 1 8.2929 -7.9396 -0.5490 38 1 8.0522 -6.2917 1.2648 39 1 5.8100 -5.6404 2.0470 40 1 3.3766 -6.4916 3.8772 41 1 2.4806 -8.2772 5.3567 42 1 1.5169 -10.3062 4.3467 43 1 2.2871 -8.8946 0.5205 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171768303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:17 Heat of formation + Delta-G solvation = -41.149274 kcal Electronic energy + Delta-G solvation = -27781.844487 eV Core-core repulsion = 23917.725934 eV Total energy + Delta-G solvation = -3864.118553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45696 -40.03564 -38.20833 -37.14331 -36.94134 -35.89935 -33.41540 -33.13937 -32.18843 -31.75877 -31.42845 -27.60975 -27.02200 -24.66102 -23.66170 -23.61189 -23.30327 -21.91355 -20.34850 -19.20274 -18.67622 -18.15220 -17.93734 -17.31651 -17.14815 -16.93342 -16.51804 -16.32220 -16.16984 -15.87110 -15.28180 -15.08207 -14.80434 -14.59774 -14.44989 -14.22313 -13.95229 -13.85809 -13.71874 -13.55462 -13.24265 -13.14229 -13.05160 -12.92550 -12.78551 -12.75520 -12.27940 -12.23090 -12.10485 -11.88016 -11.75377 -11.28444 -10.76098 -10.72027 -10.64064 -10.37167 -9.97340 -9.78455 -9.60655 -8.25293 -6.39282 -0.75959 0.10854 0.35095 0.48476 0.53883 1.42038 1.43558 1.54604 1.75975 2.38651 2.74220 2.82899 2.91856 3.08523 3.20038 3.51206 3.67043 3.72137 3.79042 3.92734 4.04063 4.06816 4.12650 4.17649 4.19611 4.23436 4.33766 4.50289 4.64849 4.65557 4.74419 4.79749 4.87623 5.07156 5.16702 5.20677 5.26240 5.27668 5.30354 5.58407 5.65193 5.66103 5.69004 5.78377 5.95219 6.06356 6.12051 6.74525 7.02577 7.31124 8.87005 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.003515 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2673.008778 B = 7963.571265 C = 9195.055149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.021 3.979 10 C -0.586 4.586 11 S 2.613 3.387 12 O -0.997 6.997 13 O -0.987 6.987 14 N -1.101 6.101 15 C 0.240 3.760 16 H 0.114 0.886 17 C -0.094 4.094 18 C -0.119 4.119 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.148 4.148 24 C -0.073 4.073 25 C -0.168 4.168 26 C 0.081 3.919 27 N -0.513 5.513 28 C 0.097 3.903 29 H 0.267 0.733 30 H 0.004 0.996 31 H 0.008 0.992 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.424 0.576 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.167 0.833 42 H 0.179 0.821 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.732 -18.151 5.546 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.576 4.576 8 H 0.096 0.904 9 C -0.018 4.018 10 C -0.718 4.718 11 S 2.711 3.289 12 O -0.987 6.987 13 O -0.977 6.977 14 N -0.861 5.861 15 C 0.132 3.868 16 H 0.132 0.868 17 C -0.095 4.095 18 C -0.138 4.138 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.152 4.152 24 C -0.100 4.100 25 C -0.187 4.187 26 C -0.076 4.076 27 N -0.222 5.222 28 C -0.060 4.060 29 H 0.076 0.924 30 H 0.022 0.978 31 H 0.027 0.973 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.262 0.738 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.176 0.824 41 H 0.185 0.815 42 H 0.196 0.804 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 15.229 -18.902 5.332 24.852 hybrid contribution 0.579 1.708 -0.190 1.813 sum 15.807 -17.194 5.143 23.915 Atomic orbital electron populations 1.70104 1.08107 1.28300 1.50922 1.26104 0.95806 1.03846 0.94402 0.85332 0.78757 0.77725 0.78577 1.19782 1.20945 1.17896 1.21504 0.94026 0.90618 1.51431 0.90420 1.18823 0.93567 0.93050 0.96377 1.30332 1.12785 1.16080 1.12605 1.04740 0.74665 0.76578 0.72963 1.93511 1.72811 1.85821 1.46579 1.93530 1.72350 1.85257 1.46529 1.55588 1.51816 1.51062 1.27656 1.18484 0.86287 0.97741 0.84265 0.86812 1.19683 0.92964 0.98815 0.98061 1.21108 0.98495 0.97237 0.96922 1.21401 0.92169 1.00338 1.00385 1.21525 0.99578 0.96670 0.96335 1.21436 0.97624 0.97715 0.97294 1.21279 0.91974 0.99967 1.00254 1.21149 1.01196 0.97288 0.95594 1.21858 0.95862 0.99920 0.92321 1.22472 0.99090 0.94326 1.02821 1.23291 0.95500 0.97826 0.90958 1.67679 1.16735 1.31512 1.06260 1.22606 0.93812 0.89360 1.00184 0.92432 0.97770 0.97321 0.83599 0.83848 0.73786 0.85484 0.84256 0.84055 0.83905 0.84201 0.82387 0.81535 0.80389 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 3 Si 0.97 42.51 29.54 68.60 2.03 44.53 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.54 -29.09 9.11 25.60 0.23 -28.86 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.02 1.07 4.98 29.85 0.15 1.22 16 10 C -0.59 -21.30 5.90 71.98 0.42 -20.88 16 11 S 2.61 91.84 5.38 -56.49 -0.30 91.54 16 12 O -1.00 -41.73 18.08 -127.65 -2.31 -44.04 16 13 O -0.99 -40.53 17.78 -127.65 -2.27 -42.80 16 14 N -1.10 -26.96 4.63 -175.67 -0.81 -27.78 16 15 C 0.24 5.15 2.49 43.50 0.11 5.26 16 16 H 0.11 2.18 6.90 -2.39 -0.02 2.17 16 17 C -0.09 -1.73 4.94 -19.87 -0.10 -1.83 16 18 C -0.12 -2.07 8.96 22.27 0.20 -1.87 16 19 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 20 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 21 C -0.12 -1.76 10.05 22.27 0.22 -1.53 16 22 C -0.12 -1.89 9.67 22.27 0.22 -1.68 16 23 C -0.15 -3.48 4.91 -19.78 -0.10 -3.58 16 24 C -0.07 -1.50 9.82 22.47 0.22 -1.28 16 25 C -0.17 -3.08 10.11 22.36 0.23 -2.85 16 26 C 0.08 1.70 11.18 84.69 0.95 2.64 16 27 N -0.51 -13.58 10.36 -195.84 -2.03 -15.60 16 28 C 0.10 2.48 10.30 84.67 0.87 3.35 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.30 16 30 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.15 4.42 7.44 -2.39 -0.02 4.40 16 33 H 0.14 4.60 8.14 -2.39 -0.02 4.59 16 34 H 0.42 8.59 6.88 -96.75 -0.67 7.93 16 35 H 0.13 1.93 6.38 -2.91 -0.02 1.92 16 36 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.14 1.79 8.04 -2.91 -0.02 1.76 16 40 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 43 H 0.15 3.46 7.14 -2.91 -0.02 3.44 16 Total: -1.00 -80.58 379.95 -0.51 -81.10 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.37 Total: 23.93 kcal Atomic # 6 Polarization: -59.30 SS G_CDS: 4.53 Total: -54.77 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -2.56 Total: -99.49 kcal Atomic # 8 Polarization: -82.26 SS G_CDS: -4.58 Total: -86.84 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 91.84 SS G_CDS: -0.30 Total: 91.54 kcal Total: -80.58 -0.51 -81.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171768303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.946 kcal (2) G-P(sol) polarization free energy of solvation -80.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds