Wall clock time and date at job start Sat Apr 11 2020 07:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 S 1.77235 * 127.33658 * 2 1 4 4 C 1.72215 * 94.84461 * 179.81300 * 3 2 1 5 5 O 1.21823 * 127.05836 * 180.20168 * 4 3 2 6 6 N 1.34239 * 105.88322 * 0.32166 * 4 3 2 7 7 C 1.46509 * 121.38112 * 179.88093 * 6 4 3 8 8 C 1.52998 * 109.47021 * 269.72070 * 7 6 4 9 9 C 1.50698 * 109.47266 * 179.97438 * 8 7 6 10 10 O 1.21280 * 119.99698 * 354.83556 * 9 8 7 11 11 N 1.34779 * 120.00551 * 174.84079 * 9 8 7 12 12 C 1.37145 * 119.99420 * 5.67082 * 11 9 8 13 13 H 1.07998 * 119.99633 * 55.67594 * 12 11 9 14 14 C 1.38885 * 120.00095 * 235.66821 * 12 11 9 15 15 N 1.31432 * 119.99822 * 9.25400 * 14 12 11 16 16 Si 1.86797 * 120.00347 * 189.25114 * 14 12 11 17 17 H 1.48497 * 109.46879 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47324 * 119.99950 * 16 14 12 19 19 H 1.48496 * 109.47473 * 240.00378 * 16 14 12 20 20 C 1.39785 * 120.00130 * 185.67673 * 11 9 8 21 21 C 1.38961 * 120.07283 * 175.18842 * 20 11 9 22 22 C 1.38081 * 119.91704 * 179.97438 * 21 20 11 23 23 C 1.38303 * 120.08186 * 359.97438 * 22 21 20 24 24 C 1.38313 * 120.15414 * 0.02562 * 23 22 21 25 25 C 1.38080 * 120.07962 * 359.97438 * 24 23 22 26 26 C 1.32565 * 127.34425 * 180.02562 * 2 1 3 27 27 C 1.50698 * 121.64266 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47326 * 269.99977 * 1 2 3 29 29 H 1.09001 * 109.47338 * 29.99917 * 1 2 3 30 30 H 1.08998 * 109.47208 * 149.99591 * 1 2 3 31 31 H 1.08998 * 109.47361 * 149.72154 * 7 6 4 32 32 H 1.09000 * 109.46737 * 29.71555 * 7 6 4 33 33 H 1.09000 * 109.47496 * 59.99942 * 8 7 6 34 34 H 1.09006 * 109.46959 * 299.99814 * 8 7 6 35 35 H 0.96994 * 119.99721 * 184.98388 * 15 14 12 36 36 H 1.07998 * 120.04322 * 359.69957 * 21 20 11 37 37 H 1.08007 * 119.96193 * 179.97438 * 22 21 20 38 38 H 1.08004 * 119.92595 * 179.97438 * 23 22 21 39 39 H 1.08004 * 119.95761 * 180.02562 * 24 23 22 40 40 H 1.08000 * 120.04146 * 179.97438 * 25 24 23 41 41 H 1.09002 * 109.47280 * 270.02443 * 27 26 2 42 42 H 1.09004 * 109.47290 * 30.01884 * 27 26 2 43 43 H 1.09001 * 109.47311 * 150.02467 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5819 1.4092 0.0000 4 6 4.0344 0.4841 0.0056 5 8 5.1759 0.9097 0.0111 6 7 3.6508 -0.8023 -0.0001 7 6 4.6313 -1.8909 -0.0002 8 6 4.9726 -2.2697 -1.4427 9 6 5.9817 -3.3890 -1.4429 10 8 6.4580 -3.7760 -0.3969 11 7 6.3548 -3.9598 -2.6054 12 6 5.9066 -3.4473 -3.7959 13 1 6.0774 -2.4080 -4.0347 14 6 5.2331 -4.2648 -4.6942 15 7 4.8649 -5.4739 -4.3338 16 14 4.8506 -3.6459 -6.4147 17 1 5.3682 -2.2627 -6.5696 18 1 5.4992 -4.5315 -7.4149 19 1 3.3810 -3.6517 -6.6276 20 6 7.1986 -5.0743 -2.5976 21 6 7.5041 -5.7247 -3.7870 22 6 8.3383 -6.8250 -3.7757 23 6 8.8702 -7.2794 -2.5826 24 6 8.5682 -6.6344 -1.3969 25 6 7.7347 -5.5336 -1.4007 26 6 2.3111 -1.0539 -0.0005 27 6 1.7707 -2.4607 -0.0005 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 4.2132 -2.7566 0.5135 32 1 5.5357 -1.5652 0.5136 33 1 5.3907 -1.4041 -1.9565 34 1 4.0681 -2.5953 -1.9566 35 1 4.4596 -6.0708 -4.9821 36 1 7.0859 -5.3729 -4.7185 37 1 8.5759 -7.3313 -4.6996 38 1 9.5221 -8.1405 -2.5766 39 1 8.9856 -6.9918 -0.4671 40 1 7.4990 -5.0306 -0.4744 41 1 1.6404 -2.7999 1.0271 42 1 0.8096 -2.4807 -0.5143 43 1 2.4712 -3.1190 -0.5143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172067412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:19 Heat of formation + Delta-G solvation = -9.977510 kcal Electronic energy + Delta-G solvation = -28109.761838 eV Core-core repulsion = 24246.994994 eV Total energy + Delta-G solvation = -3862.766844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.20457 -41.44195 -39.06729 -38.79287 -36.90830 -35.08315 -33.87855 -32.91785 -31.36495 -30.70037 -30.26700 -27.67861 -27.00943 -25.59128 -24.02385 -23.17497 -22.60234 -21.23398 -20.81317 -19.58241 -19.24861 -18.40336 -17.51152 -17.48119 -17.27168 -16.87870 -16.52136 -16.29601 -15.91638 -15.25589 -15.04749 -14.88219 -14.80260 -14.67440 -14.55649 -14.31378 -14.00115 -13.88937 -13.64515 -13.47678 -13.38216 -13.29804 -13.06111 -12.87036 -12.85791 -12.51266 -12.32917 -12.14185 -12.06493 -11.84984 -11.77473 -11.22372 -11.08895 -10.59498 -10.47662 -10.00201 -9.55309 -8.89226 -8.75831 -8.18469 -6.50951 -0.15914 0.32685 0.64459 0.75979 0.79778 1.08559 1.35899 1.42312 1.53238 1.68841 1.90410 2.20665 2.73149 2.87265 3.32695 3.53949 3.71812 3.77250 4.02104 4.10769 4.24458 4.30562 4.31352 4.43740 4.50085 4.57402 4.63214 4.66052 4.69737 4.90867 4.92387 4.94685 4.98915 5.08384 5.11451 5.15432 5.31979 5.40854 5.42593 5.74478 5.77957 5.86554 5.87321 6.00369 6.19974 6.21294 6.58842 6.92927 7.33516 7.71309 8.58903 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.012555 B = 0.003507 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.698144 B = 7981.198583 C = 9068.663232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.196 4.196 3 S 0.008 5.992 4 C 0.459 3.541 5 O -0.523 6.523 6 N -0.527 5.527 7 C 0.129 3.871 8 C -0.113 4.113 9 C 0.486 3.514 10 O -0.582 6.582 11 N -0.394 5.394 12 C -0.383 4.383 13 H 0.089 0.911 14 C 0.031 3.969 15 N -0.868 5.868 16 Si 0.972 3.028 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.270 1.270 20 C 0.150 3.850 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.163 4.163 24 C -0.119 4.119 25 C -0.215 4.215 26 C 0.082 3.918 27 C -0.101 4.101 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.277 0.723 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.164 0.836 41 H 0.103 0.897 42 H 0.116 0.884 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.783 3.863 4.754 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.315 4.315 3 S 0.252 5.748 4 C 0.143 3.857 5 O -0.407 6.407 6 N -0.246 5.246 7 C 0.003 3.997 8 C -0.154 4.154 9 C 0.279 3.721 10 O -0.469 6.469 11 N -0.101 5.101 12 C -0.510 4.510 13 H 0.106 0.894 14 C -0.176 4.176 15 N -0.501 5.501 16 Si 0.795 3.205 17 H -0.187 1.187 18 H -0.197 1.197 19 H -0.195 1.195 20 C 0.054 3.946 21 C -0.147 4.147 22 C -0.144 4.144 23 C -0.182 4.182 24 C -0.138 4.138 25 C -0.235 4.235 26 C -0.027 4.027 27 C -0.160 4.160 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.134 0.866 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.154 0.846 40 H 0.180 0.820 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.256 5.188 5.203 12.616 hybrid contribution 0.631 -1.112 -1.130 1.707 sum -9.625 4.076 4.073 11.218 Atomic orbital electron populations 1.20316 0.82689 1.04634 1.04298 1.24054 1.01012 0.90109 1.16375 1.84836 0.97095 1.12100 1.80758 1.21998 0.94912 0.85724 0.83064 1.90923 1.21233 1.72986 1.55581 1.46116 1.07312 1.07168 1.64018 1.21461 0.92247 0.89408 0.96535 1.21471 0.99505 0.96876 0.97514 1.21116 0.83065 0.85108 0.82825 1.90174 1.57962 1.65694 1.33050 1.41179 1.38183 1.24479 1.06263 1.19519 1.38260 0.97716 0.95534 0.89368 1.26215 0.92744 0.95432 1.03234 1.70121 1.35892 1.07930 1.36126 0.85199 0.78561 0.79152 0.77631 1.18678 1.19655 1.19478 1.18647 0.91185 0.90219 0.94526 1.21071 0.98958 0.97059 0.97648 1.21158 0.97755 0.96483 0.98957 1.21237 1.02974 1.01768 0.92249 1.21257 0.98286 0.95417 0.98839 1.22833 1.00793 1.00147 0.99681 1.19797 0.80927 0.99903 1.02026 1.20926 1.02794 0.87146 1.05104 0.88904 0.90083 0.88288 0.86964 0.90064 0.90247 0.87977 0.91313 0.86582 0.84955 0.83994 0.84585 0.82004 0.87874 0.86588 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.10 71.23 0.72 0.08 16 2 C -0.20 -3.86 6.72 24.53 0.16 -3.69 16 3 S 0.01 0.21 22.97 -56.49 -1.30 -1.08 16 4 C 0.46 15.63 8.27 129.88 1.07 16.70 16 5 O -0.52 -21.82 17.55 -4.74 -0.08 -21.90 16 6 N -0.53 -15.91 2.60 -643.42 -1.68 -17.59 16 7 C 0.13 4.33 4.28 86.38 0.37 4.70 16 8 C -0.11 -4.41 4.75 29.85 0.14 -4.26 16 9 C 0.49 22.88 7.57 87.66 0.66 23.54 16 10 O -0.58 -28.31 12.37 -3.03 -0.04 -28.34 16 11 N -0.39 -19.91 2.62 -458.90 -1.20 -21.11 16 12 C -0.38 -18.93 7.61 84.02 0.64 -18.29 16 13 H 0.09 4.30 7.85 -2.91 -0.02 4.28 16 14 C 0.03 1.47 3.49 84.91 0.30 1.77 16 15 N -0.87 -43.52 11.39 21.65 0.25 -43.27 16 16 Si 0.97 37.28 29.57 68.60 2.03 39.31 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 18 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 19 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 20 C 0.15 7.60 6.05 38.22 0.23 7.83 16 21 C -0.13 -6.03 7.87 22.41 0.18 -5.86 16 22 C -0.12 -5.00 10.04 22.25 0.22 -4.77 16 23 C -0.16 -5.95 10.04 22.30 0.22 -5.73 16 24 C -0.12 -4.71 10.04 22.25 0.22 -4.49 16 25 C -0.21 -10.15 9.06 22.41 0.20 -9.95 16 26 C 0.08 1.89 6.59 40.71 0.27 2.16 16 27 C -0.10 -1.76 9.07 71.24 0.65 -1.12 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.74 6.77 -2.39 -0.02 0.72 16 31 H 0.11 3.40 6.83 -2.39 -0.02 3.39 16 32 H 0.08 3.05 7.70 -2.39 -0.02 3.03 16 33 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.10 3.89 7.42 -2.38 -0.02 3.87 16 35 H 0.28 13.04 8.32 -92.71 -0.77 12.27 16 36 H 0.12 5.78 5.15 -2.91 -0.02 5.77 16 37 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 38 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.16 8.01 4.50 -64.43 -0.29 7.72 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.12 1.39 6.69 -2.38 -0.02 1.37 16 43 H 0.06 1.40 6.22 -2.39 -0.01 1.39 16 Total: -1.00 -65.79 366.13 5.02 -60.77 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.77 Total: 34.59 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 6.27 Total: -1.37 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -2.63 Total: -81.97 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.12 Total: -50.24 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.30 Total: -1.08 kcal Total: -65.79 5.02 -60.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172067412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.795 kcal (2) G-P(sol) polarization free energy of solvation -65.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds