Wall clock time and date at job start Sat Apr 11 2020 07:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39247 * 119.57839 * 2 1 4 4 C 1.36326 * 121.04899 * 179.97438 * 3 2 1 5 5 F 1.35104 * 120.16241 * 180.02562 * 4 3 2 6 6 C 1.40865 * 119.67615 * 0.02562 * 4 3 2 7 7 N 1.33567 * 121.09650 * 180.02562 * 6 4 3 8 8 C 1.31217 * 122.33934 * 179.97438 * 7 6 4 9 9 O 1.35607 * 118.81119 * 180.02562 * 8 7 6 10 10 C 1.39972 * 122.38425 * 0.02562 * 8 7 6 11 11 C 1.38771 * 119.43910 * 359.97438 * 10 8 7 12 12 C 1.47904 * 121.35566 * 179.97438 * 11 10 8 13 13 O 1.21552 * 119.99567 * 146.26378 * 12 11 10 14 14 N 1.34771 * 120.00552 * 326.26600 * 12 11 10 15 15 C 1.47067 * 136.05515 * 4.15109 * 14 12 11 16 16 C 1.53241 * 88.08301 * 207.20268 * 15 14 12 17 17 O 1.42907 * 114.19437 * 87.72770 * 16 15 14 18 18 C 1.50693 * 114.32656 * 220.46597 * 16 15 14 19 19 H 1.08007 * 120.00028 * 93.75855 * 18 16 15 20 20 C 1.37873 * 120.00383 * 273.76085 * 18 16 15 21 21 N 1.31516 * 119.99972 * 359.97438 * 20 18 16 22 22 Si 1.86806 * 120.00081 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47093 * 90.00141 * 22 20 18 24 24 H 1.48498 * 109.46983 * 209.99583 * 22 20 18 25 25 H 1.48496 * 109.47142 * 329.99790 * 22 20 18 26 26 C 1.47070 * 136.06140 * 184.51932 * 14 12 11 27 27 C 1.41616 * 118.93738 * 359.97438 * 6 4 3 28 28 C 1.36342 * 119.57989 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47008 * 90.00240 * 1 2 3 30 30 H 1.09002 * 109.46891 * 209.99574 * 1 2 3 31 31 H 1.08996 * 109.47771 * 330.00066 * 1 2 3 32 32 H 1.08000 * 119.47532 * 359.97438 * 3 2 1 33 33 H 0.96695 * 114.00354 * 89.98975 * 9 8 7 34 34 H 1.07994 * 120.27864 * 179.97438 * 10 8 7 35 35 H 1.09001 * 113.46597 * 321.93061 * 15 14 12 36 36 H 1.09000 * 113.47178 * 92.37326 * 15 14 12 37 37 H 0.96694 * 113.99744 * 86.30492 * 17 16 15 38 38 H 0.97006 * 120.00054 * 179.97438 * 21 20 18 39 39 H 1.08997 * 113.47007 * 267.62666 * 26 14 12 40 40 H 1.09003 * 113.46431 * 38.00508 * 26 14 12 41 41 H 1.07997 * 120.19000 * 0.05149 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2110 0.0000 4 6 3.5572 1.2460 0.0005 5 9 4.2058 2.4311 0.0010 6 6 4.2858 0.0404 0.0005 7 7 5.6215 0.0416 0.0015 8 6 6.3243 -1.0664 0.0021 9 8 7.6778 -0.9818 0.0036 10 6 5.7278 -2.3327 0.0011 11 6 4.3438 -2.4346 0.0000 12 6 3.6691 -3.7508 -0.0016 13 8 2.6124 -3.8927 0.5821 14 7 4.2258 -4.7927 -0.6503 15 6 5.4787 -5.0386 -1.3801 16 6 4.7359 -6.1044 -2.1929 17 8 4.0745 -5.5996 -3.3548 18 6 5.5372 -7.3526 -2.4588 19 1 5.4527 -8.2003 -1.7948 20 6 6.3782 -7.4127 -3.5497 21 7 6.4808 -6.3807 -4.3585 22 14 7.3710 -8.9603 -3.8796 23 1 6.5868 -9.8760 -4.7467 24 1 8.6397 -8.5986 -4.5614 25 1 7.6757 -9.6366 -2.5932 26 6 3.8449 -6.1823 -0.9454 27 6 3.5795 -1.1871 0.0005 28 6 2.1801 -1.1857 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6390 2.1373 -0.0004 33 1 8.0693 -0.9573 0.8874 34 1 6.3394 -3.2227 0.0011 35 1 5.8063 -4.1886 -1.9787 36 1 6.2730 -5.4453 -0.7543 37 1 4.6385 -5.5518 -4.1388 38 1 7.0728 -6.4228 -5.1258 39 1 4.1996 -6.8967 -0.2026 40 1 2.7860 -6.3029 -1.1740 41 1 1.6363 -2.1188 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193974984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:40 Heat of formation + Delta-G solvation = -68.594144 kcal Electronic energy + Delta-G solvation = -30100.739237 eV Core-core repulsion = 25669.217408 eV Total energy + Delta-G solvation = -4431.521828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.94765 -41.07520 -39.66203 -38.61426 -37.59415 -36.26603 -34.20712 -33.26764 -32.28807 -31.59083 -30.43350 -28.87781 -27.01684 -25.78877 -25.35620 -24.54310 -22.93847 -22.52242 -20.62969 -19.44496 -18.38564 -18.22638 -17.56447 -17.37671 -16.90780 -16.46695 -15.93947 -15.67333 -15.61300 -15.25900 -14.94303 -14.75493 -14.67015 -14.29932 -13.88424 -13.70982 -13.35483 -13.29834 -13.13648 -12.82308 -12.64302 -12.37276 -12.15185 -12.08280 -11.79501 -11.66100 -11.52722 -11.16378 -11.14712 -11.11026 -10.57269 -10.47111 -10.35885 -10.22996 -9.61734 -9.35736 -8.91373 -8.87778 -8.56231 -8.19739 -8.04975 -6.49421 -4.60783 -0.05642 0.48445 1.45271 2.46723 2.96087 3.09625 3.14529 3.18723 3.20645 3.30727 3.75377 3.93143 4.10621 4.24419 4.39358 4.46320 4.60296 4.73220 4.87448 5.01482 5.10195 5.18392 5.30395 5.41165 5.43435 5.45531 5.61356 5.74509 5.77572 5.90256 5.93516 6.00239 6.15867 6.23460 6.28765 6.30808 6.42057 6.53535 6.60536 6.96185 7.27856 7.53654 7.62830 7.68078 8.15008 8.38521 8.43772 9.11213 9.37374 10.57441 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.003191 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.531021 B = 8773.711987 C = 9844.179515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.064 4.064 3 C -0.133 4.133 4 C 0.124 3.876 5 F -0.123 7.123 6 C 0.113 3.887 7 N -0.481 5.481 8 C 0.348 3.652 9 O -0.476 6.476 10 C -0.139 4.139 11 C -0.037 4.037 12 C 0.579 3.421 13 O -0.546 6.546 14 N -0.621 5.621 15 C 0.063 3.937 16 C 0.242 3.758 17 O -0.571 6.571 18 C -0.537 4.537 19 H 0.074 0.926 20 C 0.074 3.926 21 N -0.896 5.896 22 Si 0.910 3.090 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.270 1.270 26 C 0.110 3.890 27 C -0.050 4.050 28 C -0.090 4.090 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.403 0.597 34 H 0.157 0.843 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.395 0.605 38 H 0.276 0.724 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 10.622 8.610 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.065 4.065 3 C -0.153 4.153 4 C 0.103 3.897 5 F -0.101 7.101 6 C -0.008 4.008 7 N -0.201 5.201 8 C 0.153 3.847 9 O -0.283 6.283 10 C -0.161 4.161 11 C -0.048 4.048 12 C 0.368 3.632 13 O -0.427 6.427 14 N -0.352 5.352 15 C -0.059 4.059 16 C 0.200 3.800 17 O -0.385 6.385 18 C -0.575 4.575 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.737 3.263 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.195 1.195 26 C -0.012 4.012 27 C -0.053 4.053 28 C -0.109 4.109 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.161 0.839 33 H 0.262 0.738 34 H 0.174 0.826 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.252 0.748 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.517 11.675 8.640 15.210 hybrid contribution 1.278 -1.159 -0.144 1.731 sum -3.239 10.516 8.495 13.901 Atomic orbital electron populations 1.20843 0.89820 1.03408 1.03014 1.19517 0.96990 0.91536 0.98423 1.20770 0.91754 0.99784 1.03027 1.16971 0.89579 0.79448 1.03664 1.91520 1.81845 1.43239 1.93515 1.18217 0.88235 0.91700 1.02688 1.66869 1.07091 1.32150 1.13953 1.18983 0.84619 0.86971 0.94141 1.84804 1.13851 1.95608 1.33993 1.22623 0.94471 0.99130 0.99896 1.21348 0.92899 0.93160 0.97343 1.17247 0.84747 0.82310 0.78929 1.90711 1.22957 1.83993 1.44990 1.49675 1.22829 1.11702 1.51019 1.24410 0.87225 1.00631 0.93675 1.19465 0.87497 0.90136 0.82864 1.86043 1.43204 1.86961 1.22255 1.21391 1.24313 1.00101 1.11679 0.90770 1.25085 0.95877 0.96934 0.95061 1.69253 1.38784 1.29910 1.15663 0.86291 0.79129 0.82133 0.78767 1.20176 1.20844 1.19483 1.23448 1.01308 0.79788 0.96636 1.19284 0.94537 0.90945 1.00544 1.21270 0.92160 0.99761 0.97687 0.90470 0.90646 0.91135 0.83866 0.73846 0.82582 0.91226 0.89370 0.74761 0.91398 0.89101 0.91057 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.99 36.01 0.36 -0.62 16 2 C -0.06 -0.77 5.85 -104.93 -0.61 -1.38 16 3 C -0.13 -1.53 9.55 -39.90 -0.38 -1.91 16 4 C 0.12 1.75 7.31 -39.28 -0.29 1.47 16 5 F -0.12 -1.79 17.13 2.25 0.04 -1.75 16 6 C 0.11 1.82 6.62 -84.83 -0.56 1.25 16 7 N -0.48 -7.91 10.16 -11.09 -0.11 -8.03 16 8 C 0.35 5.22 7.69 -17.16 -0.13 5.09 16 9 O -0.48 -5.95 13.53 -18.52 -0.25 -6.20 16 10 C -0.14 -2.13 8.76 -38.74 -0.34 -2.47 16 11 C -0.04 -0.63 5.97 -102.50 -0.61 -1.24 16 12 C 0.58 11.14 7.59 -12.31 -0.09 11.05 16 13 O -0.55 -11.31 15.43 5.32 0.08 -11.23 16 14 N -0.62 -12.19 3.68 -186.48 -0.69 -12.88 16 15 C 0.06 1.26 5.84 -8.64 -0.05 1.21 16 16 C 0.24 5.47 1.57 -91.40 -0.14 5.32 16 17 O -0.57 -14.14 13.54 -35.23 -0.48 -14.61 16 18 C -0.54 -12.68 8.69 -34.45 -0.30 -12.98 16 19 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 20 C 0.07 1.75 5.40 -17.82 -0.10 1.65 16 21 N -0.90 -21.92 11.01 55.43 0.61 -21.31 16 22 Si 0.91 18.63 29.54 -169.99 -5.02 13.61 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 26 C 0.11 2.20 8.04 -8.51 -0.07 2.13 16 27 C -0.05 -0.82 5.90 -104.73 -0.62 -1.44 16 28 C -0.09 -1.34 8.86 -39.63 -0.35 -1.69 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.40 2.73 9.06 45.56 0.41 3.14 16 34 H 0.16 2.20 6.43 -52.49 -0.34 1.87 16 35 H 0.07 1.44 7.68 -51.93 -0.40 1.04 16 36 H 0.09 1.61 8.10 -51.93 -0.42 1.19 16 37 H 0.40 9.99 6.32 45.56 0.29 10.28 16 38 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 39 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 40 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.16 2.47 5.91 -52.49 -0.31 2.16 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -29.24 357.16 -7.56 -36.80 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -2.84 Total: 14.77 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: -4.29 Total: 5.45 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.19 Total: -42.21 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.65 Total: -32.04 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.24 -7.56 -36.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193974984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.798 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds