Wall clock time and date at job start Sat Apr 11 2020 07:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39247 * 119.57839 * 2 1 4 4 C 1.36326 * 121.04899 * 179.97438 * 3 2 1 5 5 F 1.35104 * 120.16241 * 180.02562 * 4 3 2 6 6 C 1.40865 * 119.67615 * 0.02562 * 4 3 2 7 7 N 1.33567 * 121.09650 * 180.02562 * 6 4 3 8 8 C 1.31217 * 122.33934 * 179.97438 * 7 6 4 9 9 O 1.35607 * 118.81119 * 180.02562 * 8 7 6 10 10 C 1.39972 * 122.38425 * 0.02562 * 8 7 6 11 11 C 1.38771 * 119.43910 * 359.97438 * 10 8 7 12 12 C 1.47904 * 121.35566 * 179.97438 * 11 10 8 13 13 O 1.21552 * 119.99567 * 146.26378 * 12 11 10 14 14 N 1.34771 * 120.00552 * 326.26600 * 12 11 10 15 15 C 1.47067 * 136.05515 * 4.15109 * 14 12 11 16 16 C 1.53241 * 88.08301 * 207.20268 * 15 14 12 17 17 O 1.42907 * 114.19437 * 87.72770 * 16 15 14 18 18 C 1.50693 * 114.32656 * 220.46597 * 16 15 14 19 19 H 1.08007 * 120.00028 * 93.75855 * 18 16 15 20 20 C 1.37873 * 120.00383 * 273.76085 * 18 16 15 21 21 N 1.31516 * 119.99972 * 359.97438 * 20 18 16 22 22 Si 1.86806 * 120.00081 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47093 * 90.00141 * 22 20 18 24 24 H 1.48498 * 109.46983 * 209.99583 * 22 20 18 25 25 H 1.48496 * 109.47142 * 329.99790 * 22 20 18 26 26 C 1.47070 * 136.06140 * 184.51932 * 14 12 11 27 27 C 1.41616 * 118.93738 * 359.97438 * 6 4 3 28 28 C 1.36342 * 119.57989 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47008 * 90.00240 * 1 2 3 30 30 H 1.09002 * 109.46891 * 209.99574 * 1 2 3 31 31 H 1.08996 * 109.47771 * 330.00066 * 1 2 3 32 32 H 1.08000 * 119.47532 * 359.97438 * 3 2 1 33 33 H 0.96695 * 114.00354 * 89.98975 * 9 8 7 34 34 H 1.07994 * 120.27864 * 179.97438 * 10 8 7 35 35 H 1.09001 * 113.46597 * 321.93061 * 15 14 12 36 36 H 1.09000 * 113.47178 * 92.37326 * 15 14 12 37 37 H 0.96694 * 113.99744 * 86.30492 * 17 16 15 38 38 H 0.97006 * 120.00054 * 179.97438 * 21 20 18 39 39 H 1.08997 * 113.47007 * 267.62666 * 26 14 12 40 40 H 1.09003 * 113.46431 * 38.00508 * 26 14 12 41 41 H 1.07997 * 120.19000 * 0.05149 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2110 0.0000 4 6 3.5572 1.2460 0.0005 5 9 4.2058 2.4311 0.0010 6 6 4.2858 0.0404 0.0005 7 7 5.6215 0.0416 0.0015 8 6 6.3243 -1.0664 0.0021 9 8 7.6778 -0.9818 0.0036 10 6 5.7278 -2.3327 0.0011 11 6 4.3438 -2.4346 0.0000 12 6 3.6691 -3.7508 -0.0016 13 8 2.6124 -3.8927 0.5821 14 7 4.2258 -4.7927 -0.6503 15 6 5.4787 -5.0386 -1.3801 16 6 4.7359 -6.1044 -2.1929 17 8 4.0745 -5.5996 -3.3548 18 6 5.5372 -7.3526 -2.4588 19 1 5.4527 -8.2003 -1.7948 20 6 6.3782 -7.4127 -3.5497 21 7 6.4808 -6.3807 -4.3585 22 14 7.3710 -8.9603 -3.8796 23 1 6.5868 -9.8760 -4.7467 24 1 8.6397 -8.5986 -4.5614 25 1 7.6757 -9.6366 -2.5932 26 6 3.8449 -6.1823 -0.9454 27 6 3.5795 -1.1871 0.0005 28 6 2.1801 -1.1857 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6390 2.1373 -0.0004 33 1 8.0693 -0.9573 0.8874 34 1 6.3394 -3.2227 0.0011 35 1 5.8063 -4.1886 -1.9787 36 1 6.2730 -5.4453 -0.7543 37 1 4.6385 -5.5518 -4.1388 38 1 7.0728 -6.4228 -5.1258 39 1 4.1996 -6.8967 -0.2026 40 1 2.7860 -6.3029 -1.1740 41 1 1.6363 -2.1188 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193974984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:39 Heat of formation + Delta-G solvation = -91.431091 kcal Electronic energy + Delta-G solvation = -30101.729521 eV Core-core repulsion = 25669.217408 eV Total energy + Delta-G solvation = -4432.512113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.116 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.03732 -42.29139 -41.18504 -39.68592 -39.14662 -37.31307 -35.98055 -34.51909 -34.13350 -32.56674 -31.58772 -30.43114 -28.08542 -27.36551 -26.95829 -25.81915 -24.12243 -23.61514 -22.10289 -20.81947 -19.82492 -19.38614 -19.15970 -18.56246 -18.22564 -17.66656 -17.22263 -17.07141 -16.99122 -16.69650 -16.30122 -16.13114 -15.99603 -15.73604 -15.09537 -14.92063 -14.73169 -14.44843 -14.23781 -14.19967 -14.07968 -13.78595 -13.43557 -13.40290 -12.98145 -12.83136 -12.79786 -12.73987 -12.53196 -12.22075 -12.19732 -12.12215 -11.79561 -11.57818 -11.20294 -10.81922 -10.65441 -10.28926 -9.97282 -9.73478 -9.25402 -8.28547 -6.45867 -1.23209 -0.61730 0.28240 1.34053 1.47951 1.50104 1.55820 1.61251 1.75032 2.23229 2.40322 2.60376 2.79640 2.91392 3.01755 3.20761 3.44856 3.48310 3.66442 3.76431 3.96596 4.03163 4.07277 4.13892 4.27432 4.39791 4.54807 4.58236 4.61470 4.67708 4.77067 4.79451 4.83275 4.86695 4.90526 5.08656 5.19520 5.19975 5.34691 5.60721 5.72183 5.88089 6.32638 6.58474 6.59944 6.62558 6.85207 7.28375 7.45379 8.77629 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.014714 B = 0.003191 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.531021 B = 8773.711987 C = 9844.179515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.046 4.046 3 C -0.113 4.113 4 C 0.110 3.890 5 F -0.126 7.126 6 C 0.094 3.906 7 N -0.496 5.496 8 C 0.349 3.651 9 O -0.478 6.478 10 C -0.130 4.130 11 C -0.060 4.060 12 C 0.580 3.420 13 O -0.565 6.565 14 N -0.623 5.623 15 C 0.079 3.921 16 C 0.219 3.781 17 O -0.587 6.587 18 C -0.550 4.550 19 H 0.080 0.920 20 C 0.033 3.967 21 N -0.918 5.918 22 Si 0.970 3.030 23 H -0.280 1.280 24 H -0.284 1.284 25 H -0.262 1.262 26 C 0.113 3.887 27 C -0.062 4.062 28 C -0.116 4.116 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.184 0.816 33 H 0.427 0.573 34 H 0.166 0.834 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.390 0.610 38 H 0.276 0.724 39 H 0.114 0.886 40 H 0.062 0.938 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 11.509 9.369 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.046 4.046 3 C -0.133 4.133 4 C 0.089 3.911 5 F -0.105 7.105 6 C -0.027 4.027 7 N -0.216 5.216 8 C 0.153 3.847 9 O -0.289 6.289 10 C -0.152 4.152 11 C -0.071 4.071 12 C 0.370 3.630 13 O -0.447 6.447 14 N -0.355 5.355 15 C -0.043 4.043 16 C 0.177 3.823 17 O -0.400 6.400 18 C -0.588 4.588 19 H 0.098 0.902 20 C -0.167 4.167 21 N -0.559 5.559 22 Si 0.795 3.205 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.186 1.186 26 C -0.009 4.009 27 C -0.065 4.065 28 C -0.134 4.134 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.202 0.798 33 H 0.290 0.710 34 H 0.183 0.817 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.246 0.754 38 H 0.086 0.914 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.762 12.564 9.435 16.418 hybrid contribution 1.285 -1.364 -0.367 1.910 sum -3.477 11.200 9.068 14.825 Atomic orbital electron populations 1.20970 0.87067 1.04840 1.04207 1.19915 0.98814 0.90539 0.95354 1.21170 0.90763 1.01129 1.00215 1.17188 0.90486 0.78798 1.04581 1.91508 1.82125 1.43175 1.93664 1.18481 0.88317 0.92361 1.03580 1.66924 1.07536 1.32701 1.14442 1.18995 0.85396 0.86536 0.93776 1.84759 1.12482 1.95451 1.36227 1.22704 0.93880 0.99757 0.98813 1.21225 0.93723 0.92426 0.99745 1.17540 0.84446 0.82776 0.78253 1.90686 1.23814 1.84394 1.45808 1.49645 1.22732 1.11751 1.51338 1.24200 0.87463 0.99317 0.93353 1.19775 0.88762 0.90870 0.82861 1.86028 1.43829 1.87302 1.22864 1.21654 1.24414 1.00668 1.12059 0.90201 1.25765 0.96773 0.99279 0.94920 1.69329 1.39293 1.31308 1.15993 0.85361 0.77550 0.78951 0.78632 1.20550 1.20949 1.18629 1.23451 1.00499 0.80761 0.96161 1.19392 0.95231 0.90739 1.01125 1.21255 0.91739 1.00438 0.99995 0.89172 0.90818 0.88169 0.79846 0.71020 0.81688 0.92304 0.87497 0.75445 0.91395 0.86830 0.91928 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.99 71.24 0.71 -0.91 16 2 C -0.05 -1.00 5.85 -20.06 -0.12 -1.12 16 3 C -0.11 -2.28 9.55 22.07 0.21 -2.07 16 4 C 0.11 2.96 7.31 22.47 0.16 3.13 16 5 F -0.13 -3.49 17.13 44.97 0.77 -2.72 16 6 C 0.09 2.99 6.62 40.36 0.27 3.26 16 7 N -0.50 -16.22 10.16 -302.42 -3.07 -19.29 16 8 C 0.35 10.35 7.69 85.21 0.66 11.00 16 9 O -0.48 -11.47 13.53 -89.18 -1.21 -12.68 16 10 C -0.13 -3.98 8.76 22.82 0.20 -3.78 16 11 C -0.06 -2.11 5.97 -18.49 -0.11 -2.22 16 12 C 0.58 22.72 7.59 86.80 0.66 23.38 16 13 O -0.57 -23.95 15.43 -3.88 -0.06 -24.01 16 14 N -0.62 -24.65 3.68 -862.64 -3.18 -27.83 16 15 C 0.08 3.16 5.84 83.09 0.49 3.64 16 16 C 0.22 9.93 1.57 -11.30 -0.02 9.91 16 17 O -0.59 -29.77 13.54 -148.98 -2.02 -31.79 16 18 C -0.55 -25.79 8.69 25.60 0.22 -25.56 16 19 H 0.08 3.56 7.81 -2.91 -0.02 3.54 16 20 C 0.03 1.56 5.40 84.65 0.46 2.02 16 21 N -0.92 -45.20 11.01 21.45 0.24 -44.96 16 22 Si 0.97 37.75 29.54 68.60 2.03 39.78 16 23 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 26 C 0.11 4.54 8.04 83.18 0.67 5.20 16 27 C -0.06 -2.05 5.90 -19.93 -0.12 -2.17 16 28 C -0.12 -3.42 8.86 22.24 0.20 -3.23 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.11 8.07 -2.39 -0.02 1.09 16 31 H 0.10 0.87 8.08 -2.39 -0.02 0.85 16 32 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.43 5.16 9.06 -74.06 -0.67 4.48 16 34 H 0.17 4.61 6.43 -2.91 -0.02 4.59 16 35 H 0.06 2.46 7.68 -2.39 -0.02 2.44 16 36 H 0.11 3.82 8.10 -2.39 -0.02 3.80 16 37 H 0.39 20.28 6.32 -74.06 -0.47 19.81 16 38 H 0.28 12.97 8.31 -92.70 -0.77 12.20 16 39 H 0.11 3.99 8.10 -2.39 -0.02 3.97 16 40 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.14 4.56 5.91 -2.91 -0.02 4.55 16 Total: -1.00 -63.52 357.16 -1.97 -65.49 By element: Atomic # 1 Polarization: 37.53 SS G_CDS: -0.01 Total: 37.53 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 4.53 Total: 20.49 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -6.01 Total: -92.08 kcal Atomic # 8 Polarization: -65.19 SS G_CDS: -3.28 Total: -68.48 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.77 Total: -2.72 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -63.52 -1.97 -65.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193974984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.945 kcal (2) G-P(sol) polarization free energy of solvation -63.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds