Wall clock time and date at job start Sat Apr 11 2020 07:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53767 * 113.18303 * 2 1 4 4 C 1.54860 * 100.61819 * 90.11336 * 3 2 1 5 5 C 1.51130 * 104.38863 * 25.57994 * 4 3 2 6 6 O 1.21286 * 124.73273 * 171.13421 * 5 4 3 7 7 N 1.35827 * 110.52919 * 351.10836 * 5 4 3 8 8 C 1.46720 * 138.90894 * 164.44760 * 7 5 4 9 9 H 1.09004 * 108.51863 * 71.94532 * 8 7 5 10 10 C 1.50697 * 108.66310 * 314.03410 * 8 7 5 11 11 O 1.21288 * 119.99380 * 354.43629 * 10 8 7 12 12 N 1.34766 * 120.00101 * 174.43434 * 10 8 7 13 13 C 1.37145 * 120.00053 * 4.19793 * 12 10 8 14 14 H 1.07991 * 120.00086 * 333.31743 * 13 12 10 15 15 C 1.38888 * 119.99741 * 153.32212 * 13 12 10 16 16 N 1.31422 * 120.00304 * 352.02553 * 15 13 12 17 17 Si 1.86800 * 119.99708 * 172.02543 * 15 13 12 18 18 H 1.48507 * 109.46827 * 90.00086 * 17 15 13 19 19 H 1.48498 * 109.47454 * 209.99638 * 17 15 13 20 20 H 1.48496 * 109.47256 * 330.00286 * 17 15 13 21 21 C 1.39790 * 120.00117 * 184.19546 * 12 10 8 22 22 C 1.38962 * 120.08143 * 113.09817 * 21 12 10 23 23 C 1.38079 * 119.92777 * 180.23168 * 22 21 12 24 24 C 1.38315 * 120.07338 * 359.47708 * 23 22 21 25 25 C 1.38304 * 120.15485 * 0.54536 * 24 23 22 26 26 C 1.38086 * 120.08187 * 359.70561 * 25 24 23 27 27 C 1.54412 * 113.64330 * 192.93753 * 8 7 5 28 28 S 1.83558 * 112.74331 * 233.98109 * 2 1 3 29 29 H 1.09009 * 109.46800 * 185.00127 * 1 2 3 30 30 H 1.08993 * 109.47496 * 305.00165 * 1 2 3 31 31 H 1.08999 * 109.47079 * 65.00733 * 1 2 3 32 32 H 1.09010 * 111.18501 * 207.95187 * 3 2 1 33 33 H 1.08996 * 111.19298 * 332.26928 * 3 2 1 34 34 H 1.08997 * 110.45382 * 266.84813 * 4 3 2 35 35 H 1.09006 * 110.44812 * 144.30228 * 4 3 2 36 36 H 0.96998 * 120.00071 * 185.06713 * 16 15 13 37 37 H 1.08001 * 120.03195 * 359.95948 * 22 21 12 38 38 H 1.07996 * 119.96308 * 179.74219 * 23 22 21 39 39 H 1.08000 * 119.91908 * 180.25115 * 24 23 22 40 40 H 1.08004 * 119.96144 * 179.72469 * 25 24 23 41 41 H 1.07997 * 120.04397 * 179.97438 * 26 25 24 42 42 H 1.08997 * 110.99756 * 135.86308 * 27 8 7 43 43 H 1.09001 * 110.99403 * 259.65865 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1353 1.4135 0.0000 4 6 2.2504 1.6746 1.5221 5 6 2.3489 0.2959 2.1333 6 8 2.6061 0.0729 3.2974 7 7 2.1087 -0.6584 1.1970 8 6 2.2913 -2.1032 1.0187 9 1 1.5793 -2.6238 1.6590 10 6 3.6867 -2.4702 1.4538 11 8 4.4714 -1.6013 1.7703 12 7 4.0624 -3.7639 1.4913 13 6 3.2050 -4.7400 1.0521 14 1 2.1381 -4.5764 1.0850 15 6 3.7090 -5.9391 0.5650 16 7 5.0021 -6.0808 0.3777 17 14 2.5488 -7.3505 0.1762 18 1 2.1035 -7.2503 -1.2370 19 1 3.2529 -8.6415 0.3828 20 1 1.3675 -7.2818 1.0734 21 6 5.3261 -4.1109 1.9779 22 6 5.4435 -4.8308 3.1606 23 6 6.6935 -5.1677 3.6409 24 6 7.8277 -4.7988 2.9404 25 6 7.7147 -4.0818 1.7632 26 6 6.4680 -3.7370 1.2797 27 6 2.0866 -2.5783 -0.4362 28 16 2.2396 -0.9955 -1.3692 29 1 -0.3633 -1.0239 0.0896 30 1 -0.3634 0.5894 0.8417 31 1 -0.3633 0.4342 -0.9314 32 1 3.1158 1.4222 -0.4764 33 1 1.4636 2.1298 -0.4729 34 1 1.3631 2.1910 1.8881 35 1 3.1473 2.2538 1.7424 36 1 5.3472 -6.8900 -0.0309 37 1 4.5582 -5.1227 3.7059 38 1 6.7856 -5.7237 4.5622 39 1 8.8040 -5.0671 3.3162 40 1 8.6026 -3.7914 1.2211 41 1 6.3805 -3.1767 0.3606 42 1 2.8652 -3.2819 -0.7306 43 1 1.0971 -3.0160 -0.5685 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194667537.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:44 Heat of formation + Delta-G solvation = -1.621006 kcal Electronic energy + Delta-G solvation = -29473.212856 eV Core-core repulsion = 25610.808377 eV Total energy + Delta-G solvation = -3862.404479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 346.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.49558 -39.29169 -37.35925 -36.56250 -34.87092 -33.65356 -31.80736 -30.25219 -29.87622 -29.80729 -28.37066 -25.44229 -25.24158 -24.18358 -21.93562 -21.48351 -21.16091 -19.76706 -18.81796 -17.84189 -17.14940 -16.49738 -15.94401 -15.59573 -15.32443 -14.92641 -14.69403 -14.46561 -14.31888 -13.94540 -13.77505 -13.47720 -13.33386 -13.10321 -12.94922 -12.75370 -12.44709 -12.43860 -12.25575 -12.12025 -11.79062 -11.63052 -11.51144 -11.29269 -11.07291 -11.01717 -10.79156 -10.64402 -10.41229 -10.26331 -10.06211 -9.52544 -9.44597 -9.02386 -8.31102 -8.29458 -7.85231 -7.61083 -7.44852 -6.38227 -4.24226 1.81729 2.27471 2.44408 2.51049 2.74437 2.98422 3.06658 3.09965 3.11716 3.56916 3.89624 4.19949 4.36738 4.51848 4.69049 4.77556 4.88287 4.96551 5.05936 5.23686 5.36860 5.39860 5.52510 5.59273 5.75281 5.80067 5.80456 5.85682 5.87192 5.90737 6.01686 6.02560 6.14066 6.41799 6.51348 6.56836 6.79845 7.03259 7.15454 7.33611 7.42961 7.46312 7.56507 7.75003 7.94555 8.30791 8.44287 8.84509 9.20424 9.64439 10.49052 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.011906 B = 0.005067 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.103105 B = 5524.406515 C = 6882.656163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.171 3.829 3 C -0.107 4.107 4 C -0.140 4.140 5 C 0.552 3.448 6 O -0.510 6.510 7 N -0.604 5.604 8 C 0.155 3.845 9 H 0.096 0.904 10 C 0.467 3.533 11 O -0.562 6.562 12 N -0.410 5.410 13 C -0.363 4.363 14 H 0.097 0.903 15 C 0.052 3.948 16 N -0.840 5.840 17 Si 0.917 3.083 18 H -0.274 1.274 19 H -0.280 1.280 20 H -0.268 1.268 21 C 0.239 3.761 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.150 4.150 25 C -0.119 4.119 26 C -0.078 4.078 27 C -0.047 4.047 28 S -0.282 6.282 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.275 0.725 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.147 0.853 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.005 7.679 -3.077 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 C -0.146 4.146 4 C -0.181 4.181 5 C 0.340 3.660 6 O -0.383 6.383 7 N -0.342 5.342 8 C 0.049 3.951 9 H 0.114 0.886 10 C 0.255 3.745 11 O -0.444 6.444 12 N -0.127 5.127 13 C -0.489 4.489 14 H 0.115 0.885 15 C -0.158 4.158 16 N -0.474 5.474 17 Si 0.743 3.257 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.192 1.192 21 C 0.148 3.852 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.169 4.169 25 C -0.138 4.138 26 C -0.098 4.098 27 C -0.195 4.195 28 S -0.053 6.053 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.165 0.835 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.819 7.962 -3.316 10.405 hybrid contribution -0.947 -1.589 0.652 1.962 sum -6.766 6.373 -2.664 9.669 Atomic orbital electron populations 1.22090 0.91035 1.03494 1.03049 1.24244 0.96106 0.95834 0.86392 1.22543 1.02911 0.93085 0.96068 1.22358 1.05357 0.95130 0.95304 1.20801 0.74662 0.85919 0.84633 1.90699 1.46804 1.84294 1.16476 1.49465 1.62975 1.05809 1.15987 1.20839 0.97907 0.79187 0.97215 0.88642 1.20078 0.89199 0.82724 0.82514 1.90624 1.53500 1.48128 1.52098 1.41132 1.12856 1.04495 1.54175 1.19510 0.89762 0.95536 1.44123 0.88523 1.25336 0.96189 0.98791 0.95469 1.69854 1.11504 1.28049 1.37989 0.86067 0.79997 0.80614 0.79021 1.19936 1.20514 1.19202 1.17147 0.84722 0.92912 0.90443 1.20887 0.96802 1.00629 0.95879 1.20659 0.92539 1.01228 0.99461 1.20722 0.97309 1.01987 0.96850 1.20688 0.96456 0.99957 0.96678 1.20756 0.91729 0.99339 0.97970 1.24746 1.07912 0.95896 0.90990 1.88185 1.83308 1.07696 1.26078 0.91363 0.91305 0.90179 0.88595 0.88832 0.87838 0.87358 0.91419 0.87430 0.87632 0.87800 0.87627 0.87755 0.83491 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.35 37.16 0.35 -1.05 16 2 C 0.17 2.31 0.87 -66.50 -0.06 2.26 16 3 C -0.11 -1.21 6.35 -25.35 -0.16 -1.37 16 4 C -0.14 -1.72 6.81 -26.69 -0.18 -1.91 16 5 C 0.55 10.19 7.26 -10.30 -0.07 10.11 16 6 O -0.51 -11.75 17.79 5.36 0.10 -11.65 16 7 N -0.60 -10.70 2.78 -152.28 -0.42 -11.13 16 8 C 0.16 2.99 2.87 -68.22 -0.20 2.79 16 9 H 0.10 1.79 7.58 -51.93 -0.39 1.40 16 10 C 0.47 11.13 6.80 -10.99 -0.07 11.06 16 11 O -0.56 -15.11 14.88 5.36 0.08 -15.03 16 12 N -0.41 -9.95 2.66 -58.98 -0.16 -10.10 16 13 C -0.36 -8.34 6.91 -14.93 -0.10 -8.44 16 14 H 0.10 2.03 6.10 -52.49 -0.32 1.71 16 15 C 0.05 1.20 5.26 -17.49 -0.09 1.11 16 16 N -0.84 -20.80 10.80 55.49 0.60 -20.20 16 17 Si 0.92 18.07 29.56 -169.99 -5.03 13.04 16 18 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 21 C 0.24 5.93 2.63 -83.69 -0.22 5.71 16 22 C -0.12 -2.86 9.62 -39.37 -0.38 -3.24 16 23 C -0.12 -2.48 10.04 -39.61 -0.40 -2.88 16 24 C -0.15 -2.98 10.04 -39.53 -0.40 -3.38 16 25 C -0.12 -2.51 10.04 -39.61 -0.40 -2.91 16 26 C -0.08 -1.88 8.60 -39.37 -0.34 -2.22 16 27 C -0.05 -0.79 5.76 37.90 0.22 -0.57 16 28 S -0.28 -4.42 22.30 -107.50 -2.40 -6.82 16 29 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.21 7.87 -51.92 -0.41 0.80 16 33 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.27 6.58 8.32 -40.82 -0.34 6.24 16 37 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 38 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 41 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 42 H 0.15 2.87 6.18 -51.93 -0.32 2.55 16 43 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -31.81 364.53 -9.89 -41.70 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -5.65 Total: 9.62 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -2.51 Total: 5.07 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.02 Total: -41.43 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: 0.18 Total: -26.68 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -2.40 Total: -6.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.81 -9.89 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194667537.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.076 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds