Wall clock time and date at job start Sat Apr 11 2020 07:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46751 * 2 1 4 4 C 1.50692 * 109.47377 * 120.00123 * 2 1 3 5 5 H 1.08006 * 120.00026 * 119.99998 * 4 2 1 6 6 C 1.37882 * 119.99996 * 300.00407 * 4 2 1 7 7 N 1.31507 * 120.00106 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99887 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46872 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47047 * 119.99747 * 8 6 4 11 11 H 1.48497 * 109.46814 * 239.99991 * 8 6 4 12 12 O 1.45200 * 109.47348 * 240.00506 * 2 1 3 13 13 C 1.34226 * 117.00157 * 89.99100 * 12 2 1 14 14 O 1.20828 * 119.99849 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00134 * 180.02562 * 13 12 2 16 16 C 1.50708 * 115.54838 * 325.58524 * 15 13 12 17 17 C 1.38301 * 119.92525 * 214.43690 * 16 15 13 18 18 C 1.38514 * 120.20538 * 180.02562 * 17 16 15 19 19 F 1.35105 * 119.96639 * 180.02562 * 18 17 16 20 20 C 1.38280 * 120.07164 * 0.02562 * 18 17 16 21 21 C 1.39253 * 119.84808 * 359.69918 * 20 18 17 22 22 C 1.48465 * 120.10079 * 180.29896 * 21 20 18 23 23 N 1.34048 * 126.66922 * 179.97438 * 22 21 20 24 24 N 1.28988 * 107.26729 * 179.83470 * 23 22 21 25 25 N 1.28730 * 108.94124 * 0.43635 * 24 23 22 26 26 H 0.97005 * 125.34259 * 179.69898 * 25 24 23 27 27 N 1.28871 * 109.31877 * 359.72191 * 25 24 23 28 28 C 1.38016 * 119.92552 * 34.42295 * 16 15 13 29 29 C 1.52997 * 117.50068 * 111.25738 * 15 13 12 30 30 C 1.52998 * 117.49926 * 179.97438 * 15 13 12 31 31 H 1.09001 * 109.47801 * 59.99591 * 1 2 3 32 32 H 1.09007 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47144 * 299.99382 * 1 2 3 34 34 H 0.97002 * 120.00018 * 179.97438 * 7 6 4 35 35 H 1.07994 * 119.89588 * 359.97438 * 17 16 15 36 36 H 1.07988 * 120.07789 * 179.97438 * 20 18 17 37 37 H 1.08002 * 120.03203 * 359.97438 * 28 16 15 38 38 H 1.09007 * 117.49922 * 215.00248 * 29 15 13 39 39 H 1.09005 * 117.49913 * 0.02562 * 29 15 13 40 40 H 1.09003 * 117.50209 * 359.97438 * 30 15 13 41 41 H 1.09010 * 117.50066 * 144.99921 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1466 -0.1875 4.8165 11 1 1.1661 -1.5869 4.8159 12 8 2.0140 -0.6844 -1.1856 13 6 2.2170 0.0641 -2.2811 14 8 1.9979 1.2520 -2.2503 15 6 2.7181 -0.5770 -3.5495 16 6 3.6784 -1.7234 -3.3629 17 6 4.7019 -1.9211 -4.2718 18 6 5.5874 -2.9732 -4.1062 19 9 6.5858 -3.1615 -4.9967 20 6 5.4507 -3.8311 -3.0303 21 6 4.4246 -3.6311 -2.1104 22 6 4.2767 -4.5448 -0.9496 23 7 3.3435 -4.4751 0.0102 24 7 3.5603 -5.4501 0.8265 25 7 4.5872 -6.1128 0.4224 26 1 4.9613 -6.8918 0.8632 27 7 5.0407 -5.5788 -0.6592 28 6 3.5346 -2.5735 -2.2852 29 6 1.7519 -0.6503 -4.7335 30 6 2.9289 0.3296 -4.7638 31 1 -0.3635 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 0.7088 1.1612 3.4845 35 1 4.8105 -1.2535 -5.1137 36 1 6.1408 -4.6516 -2.9013 37 1 2.7350 -2.4170 -1.5762 38 1 1.8108 -1.5278 -5.3776 39 1 0.7539 -0.2345 -4.5952 40 1 2.7047 1.3898 -4.6454 41 1 3.7613 0.0963 -5.4278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603443527.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:42:57 Heat of formation + Delta-G solvation = 31.256493 kcal Electronic energy + Delta-G solvation = -30419.115041 eV Core-core repulsion = 26024.215813 eV Total energy + Delta-G solvation = -4394.899229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.123 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -49.90168 -45.47440 -41.84230 -40.23733 -38.35113 -37.05148 -35.38598 -35.30042 -34.48462 -31.94884 -31.52204 -31.34218 -27.43595 -26.87585 -25.69418 -25.51095 -24.02089 -23.45854 -22.90137 -22.38834 -20.78373 -20.13781 -19.15959 -18.70114 -18.15438 -17.86737 -17.45885 -17.18349 -16.92322 -16.75066 -16.58086 -16.40099 -15.89590 -15.63700 -15.07916 -15.05311 -14.26672 -14.25916 -14.04826 -13.88795 -13.78721 -13.40255 -13.26453 -13.11910 -12.86116 -12.70422 -12.54940 -12.47247 -12.34948 -12.32738 -12.18718 -12.13837 -12.01192 -11.71742 -11.54964 -11.48095 -11.32212 -10.91369 -10.57168 -9.79396 -9.66797 -8.25783 -6.38331 -0.46630 0.04649 0.15569 1.13928 1.26936 1.36996 1.38803 1.41170 1.52514 1.91907 2.39171 2.47223 2.53539 2.78941 3.02672 3.05380 3.13695 3.46726 3.69072 3.75219 3.87743 3.94734 4.06738 4.20533 4.24377 4.40003 4.45550 4.57383 4.69587 4.75206 4.81118 4.85847 4.88784 4.93752 5.01134 5.17412 5.19873 5.33698 5.40864 5.55500 5.62032 5.67232 5.75816 5.95283 6.13742 6.66657 6.98499 7.12518 7.31832 8.82383 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.007975 B = 0.005315 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3509.962671 B = 5266.689789 C = 8163.633282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.219 3.781 3 H 0.006 0.994 4 C -0.528 4.528 5 H 0.066 0.934 6 C 0.021 3.979 7 N -0.917 5.917 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.271 1.271 12 O -0.346 6.346 13 C 0.482 3.518 14 O -0.547 6.547 15 C -0.131 4.131 16 C -0.022 4.022 17 C -0.114 4.114 18 C 0.101 3.899 19 F -0.130 7.130 20 C -0.110 4.110 21 C 0.002 3.998 22 C 0.204 3.796 23 N -0.287 5.287 24 N -0.063 5.063 25 N -0.198 5.198 26 H 0.495 0.505 27 N -0.283 5.283 28 C -0.088 4.088 29 C -0.116 4.116 30 C -0.120 4.120 31 H 0.024 0.976 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.268 0.732 35 H 0.177 0.823 36 H 0.161 0.839 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.167 -12.991 -15.184 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.166 3.834 3 H 0.024 0.976 4 C -0.566 4.566 5 H 0.084 0.916 6 C -0.179 4.179 7 N -0.556 5.556 8 Si 0.793 3.207 9 H -0.195 1.195 10 H -0.202 1.202 11 H -0.196 1.196 12 O -0.262 6.262 13 C 0.327 3.673 14 O -0.439 6.439 15 C -0.132 4.132 16 C -0.023 4.023 17 C -0.133 4.133 18 C 0.082 3.918 19 F -0.109 7.109 20 C -0.130 4.130 21 C -0.001 4.001 22 C -0.076 4.076 23 N -0.158 5.158 24 N -0.058 5.058 25 N -0.049 5.049 26 H 0.354 0.646 27 N -0.136 5.136 28 C -0.108 4.108 29 C -0.152 4.152 30 C -0.157 4.157 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.194 0.806 36 H 0.178 0.822 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.745 -12.786 -14.421 21.165 hybrid contribution 0.444 -0.237 1.395 1.483 sum 9.190 -13.023 -13.027 20.585 Atomic orbital electron populations 1.21963 0.96830 1.00273 1.00745 1.20322 0.91878 0.91881 0.79299 0.97602 1.21259 1.32433 1.13205 0.89691 0.91621 1.25631 0.94986 0.95617 1.01635 1.70009 1.37085 1.23725 1.24797 0.85339 0.78474 0.78407 0.78477 1.19520 1.20204 1.19573 1.86502 1.75697 1.42752 1.21224 1.22985 0.73543 0.85120 0.85671 1.90577 1.50603 1.17874 1.84866 1.19720 1.05492 1.00858 0.87102 1.18342 0.95157 0.93893 0.94863 1.21279 0.93020 0.97775 1.01220 1.17142 0.88425 0.96922 0.89351 1.91534 1.58365 1.94864 1.66131 1.21150 0.98254 1.00744 0.92897 1.16900 0.97701 0.94158 0.91361 1.23703 0.91427 0.94927 0.97516 1.76353 1.22916 1.14023 1.02515 1.78973 1.04578 1.01763 1.20449 1.47813 1.18000 1.24163 1.14914 0.64587 1.74792 1.23997 1.11020 1.03823 1.21682 0.99039 0.92371 0.97706 1.23439 0.95164 1.03109 0.93531 1.23489 1.01448 0.97373 0.93350 0.95741 0.93728 0.90173 0.92222 0.80622 0.82179 0.84090 0.83742 0.88014 0.87779 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.37 9.33 71.98 0.67 -6.70 16 2 C 0.22 12.23 2.56 29.84 0.08 12.30 16 3 H 0.01 0.39 7.16 -2.39 -0.02 0.37 16 4 C -0.53 -30.76 8.90 25.60 0.23 -30.54 16 5 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 6 C 0.02 1.17 5.30 84.66 0.45 1.62 16 7 N -0.92 -53.86 11.32 21.45 0.24 -53.62 16 8 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 O -0.35 -16.71 6.54 -51.38 -0.34 -17.04 16 13 C 0.48 20.36 7.44 71.23 0.53 20.89 16 14 O -0.55 -26.21 15.48 21.96 0.34 -25.87 16 15 C -0.13 -3.75 2.50 -53.67 -0.13 -3.89 16 16 C -0.02 -0.60 5.44 -19.90 -0.11 -0.71 16 17 C -0.11 -2.28 9.36 22.35 0.21 -2.07 16 18 C 0.10 2.08 7.29 22.35 0.16 2.24 16 19 F -0.13 -2.52 17.27 44.97 0.78 -1.75 16 20 C -0.11 -2.50 9.68 22.52 0.22 -2.28 16 21 C 0.00 0.06 5.87 -20.04 -0.12 -0.05 16 22 C 0.20 6.39 7.94 137.38 1.09 7.48 16 23 N -0.29 -10.60 12.23 -52.18 -0.64 -11.24 16 24 N -0.06 -1.92 13.47 37.02 0.50 -1.42 16 25 N -0.20 -4.12 7.90 37.02 0.29 -3.83 16 26 H 0.49 4.55 8.96 -347.53 -3.12 1.44 16 27 N -0.28 -6.98 12.08 -52.13 -0.63 -7.61 16 28 C -0.09 -2.89 8.73 22.48 0.20 -2.69 16 29 C -0.12 -2.32 9.94 30.65 0.30 -2.01 16 30 C -0.12 -2.39 9.39 30.65 0.29 -2.10 16 31 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.08 4.52 6.07 -2.39 -0.01 4.50 16 34 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 35 H 0.18 2.24 5.91 -2.91 -0.02 2.22 16 36 H 0.16 3.04 7.88 -2.92 -0.02 3.02 16 37 H 0.14 5.74 5.11 -2.91 -0.01 5.72 16 38 H 0.14 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.10 2.39 7.67 -2.39 -0.02 2.37 16 41 H 0.15 1.72 6.06 -2.38 -0.01 1.71 16 Total: -1.00 -76.71 360.31 4.65 -72.06 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -1.98 Total: 11.50 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.06 Total: -8.51 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -0.23 Total: -77.72 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: 0.00 Total: -42.91 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -76.71 4.65 -72.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603443527.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.319 kcal (2) G-P(sol) polarization free energy of solvation -76.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds