Wall clock time and date at job start Sat Apr 11 2020 07:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99871 * 2 1 4 4 H 1.48498 * 109.47135 * 269.99629 * 3 2 1 5 5 H 1.48501 * 109.47380 * 29.99810 * 3 2 1 6 6 H 1.48503 * 109.47073 * 149.99543 * 3 2 1 7 7 C 1.37875 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00294 * 0.02562 * 7 2 1 10 10 O 1.42907 * 110.87432 * 62.38890 * 9 7 2 11 11 C 1.55143 * 110.99245 * 298.54573 * 9 7 2 12 12 C 1.54317 * 103.01704 * 206.21598 * 11 9 7 13 13 N 1.47436 * 107.23577 * 22.28115 * 12 11 9 14 14 C 1.39470 * 110.99976 * 123.25636 * 13 12 11 15 15 C 1.39976 * 120.13547 * 127.62728 * 14 13 12 16 16 C 1.48367 * 120.16242 * 0.02562 * 15 14 13 17 17 N 1.34077 * 126.67574 * 359.95747 * 16 15 14 18 18 N 1.28986 * 107.26701 * 179.87302 * 17 16 15 19 19 N 1.28724 * 108.94838 * 0.39510 * 18 17 16 20 20 H 0.97005 * 125.33635 * 179.70819 * 19 18 17 21 21 N 1.28869 * 109.33039 * 359.75044 * 19 18 17 22 22 C 1.39207 * 119.68293 * 180.29101 * 15 14 13 23 23 C 1.38065 * 119.95674 * 359.45770 * 22 15 14 24 24 C 1.38370 * 120.27062 * 0.27491 * 23 22 15 25 25 C 1.38164 * 120.32289 * 359.97438 * 24 23 22 26 26 N 1.48015 * 119.98154 * 179.97438 * 25 24 23 27 27 O 1.21807 * 119.99872 * 298.27918 * 26 25 24 28 28 O 1.21794 * 120.00128 * 118.27802 * 26 25 24 29 29 C 1.47845 * 108.56865 * 0.98912 * 13 12 11 30 30 H 0.97003 * 119.99819 * 0.02562 * 1 2 3 31 31 H 0.96695 * 113.99605 * 297.60606 * 10 9 7 32 32 H 1.09001 * 110.70665 * 87.82975 * 11 9 7 33 33 H 1.09000 * 110.70018 * 324.59833 * 11 9 7 34 34 H 1.08995 * 109.88700 * 262.87035 * 12 11 9 35 35 H 1.09007 * 109.88744 * 141.68701 * 12 11 9 36 36 H 1.08005 * 120.02353 * 179.72782 * 22 15 14 37 37 H 1.07993 * 119.86435 * 180.24931 * 23 22 15 38 38 H 1.08000 * 119.83868 * 179.97438 * 24 23 22 39 39 H 1.09006 * 110.37388 * 94.73110 * 29 13 12 40 40 H 1.08998 * 110.37719 * 217.07338 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.4611 -2.6310 -1.1829 11 6 0.3733 -2.6341 1.2726 12 6 0.2523 -4.1622 1.4509 13 7 1.3906 -4.7761 0.7429 14 6 2.1437 -5.5735 1.6043 15 6 2.4351 -6.8987 1.2606 16 6 1.9448 -7.4613 -0.0218 17 7 1.2141 -6.8247 -0.9482 18 7 1.0001 -7.6600 -1.9075 19 7 1.5558 -8.7836 -1.6151 20 1 1.5385 -9.5793 -2.1698 21 7 2.1379 -8.6863 -0.4695 22 6 3.1825 -7.6881 2.1302 23 6 3.6416 -7.1587 3.3198 24 6 3.3572 -5.8467 3.6552 25 6 2.6121 -5.0546 2.8029 26 7 2.3118 -3.6524 3.1695 27 8 1.6620 -3.4105 4.1709 28 8 2.7146 -2.7404 2.4699 29 6 2.2180 -3.6990 0.1587 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2245 -1.9553 -1.2754 32 1 -0.6074 -2.1858 1.1135 33 1 0.8692 -2.1838 2.1325 34 1 -0.6853 -4.5127 1.0196 35 1 0.2938 -4.4164 2.5101 36 1 3.4068 -8.7127 1.8725 37 1 4.2247 -7.7712 3.9914 38 1 3.7195 -5.4398 4.5877 39 1 3.0357 -3.4412 0.8318 40 1 2.6068 -4.0037 -0.8129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606345590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:25 Heat of formation + Delta-G solvation = 156.130452 kcal Electronic energy + Delta-G solvation = -32193.541987 eV Core-core repulsion = 27823.977661 eV Total energy + Delta-G solvation = -4369.564326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -44.34495 -42.19024 -39.81317 -37.98500 -35.99846 -34.83223 -34.31284 -33.70047 -31.94749 -31.52823 -30.98636 -28.39703 -28.07240 -26.28487 -24.88437 -24.53296 -24.19155 -22.29612 -21.69420 -20.34485 -19.56752 -19.34038 -18.81085 -18.26199 -17.48681 -17.03913 -16.92742 -16.35484 -15.60020 -15.44342 -14.79612 -14.71606 -14.45297 -13.89315 -13.71791 -13.67024 -13.03049 -12.72091 -12.52477 -12.34967 -12.04538 -11.87641 -11.75171 -11.27674 -11.13747 -11.10901 -11.06103 -10.94151 -10.92128 -10.84587 -10.64400 -10.27118 -10.19703 -10.17251 -9.75137 -9.37056 -9.10254 -8.87616 -8.42324 -7.99251 -7.88250 -6.02632 -4.06938 0.22687 0.51923 1.12794 1.25802 1.65091 2.25914 2.27585 3.23949 3.37520 3.43869 3.48826 3.59672 3.96146 4.16095 4.44840 4.48950 4.54324 4.78696 5.01783 5.05216 5.24943 5.33530 5.46902 5.55706 5.63961 5.76815 5.87043 5.89488 5.95564 6.10426 6.16742 6.38341 6.40225 6.63615 6.73533 6.95439 7.13082 7.30947 7.55983 7.59728 7.62915 7.98165 8.04926 8.30833 8.31335 8.93353 9.57857 9.66804 11.05388 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.012967 B = 0.004816 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.793047 B = 5812.328898 C = 7293.255972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.267 3.733 10 O -0.578 6.578 11 C -0.153 4.153 12 C 0.030 3.970 13 N -0.484 5.484 14 C 0.197 3.803 15 C 0.000 4.000 16 C 0.218 3.782 17 N -0.196 5.196 18 N -0.058 5.058 19 N -0.237 5.237 20 H 0.471 0.529 21 N -0.302 5.302 22 C -0.043 4.043 23 C -0.126 4.126 24 C -0.047 4.047 25 C -0.068 4.068 26 N 0.008 4.992 27 O -0.176 6.176 28 O -0.066 6.066 29 C 0.048 3.952 30 H 0.264 0.736 31 H 0.376 0.624 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.034 0.966 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.085 0.915 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.812 -18.986 4.340 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.226 3.774 10 O -0.385 6.385 11 C -0.192 4.192 12 C -0.095 4.095 13 N -0.205 5.205 14 C 0.097 3.903 15 C -0.005 4.005 16 C -0.062 4.062 17 N -0.068 5.068 18 N -0.054 5.054 19 N -0.081 5.081 20 H 0.325 0.675 21 N -0.155 5.155 22 C -0.064 4.064 23 C -0.145 4.145 24 C -0.067 4.067 25 C -0.152 4.152 26 N 0.534 4.466 27 O -0.383 6.383 28 O -0.298 6.298 29 C -0.076 4.076 30 H 0.074 0.926 31 H 0.226 0.774 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.103 0.897 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.604 -20.403 3.146 21.391 hybrid contribution 0.340 1.580 0.966 1.883 sum 5.945 -18.822 4.113 20.163 Atomic orbital electron populations 1.69738 1.05921 1.27136 1.51130 1.24932 0.94893 0.99232 0.93949 0.86490 0.80039 0.82951 0.77889 1.20844 1.21326 1.19642 1.21363 0.93511 0.89980 1.50300 0.91869 1.19342 0.86299 0.90195 0.81537 1.86177 1.51358 1.56640 1.44368 1.23654 1.03434 0.89790 1.02338 1.23273 0.93883 0.97993 0.94388 1.61389 1.07920 1.23053 1.28171 1.19049 0.90280 0.93215 0.87763 1.16955 1.01533 0.91296 0.90698 1.23062 0.99288 0.86720 0.97091 1.76755 1.11979 1.20772 0.97296 1.79163 1.14949 0.90171 1.21091 1.47752 1.33420 1.13969 1.12970 0.67527 1.74783 1.20130 1.21098 0.99503 1.21415 0.92699 1.00138 0.92154 1.20954 1.01983 0.94077 0.97487 1.20918 0.94214 0.93552 0.98050 1.21879 1.08864 0.84198 1.00277 1.43439 1.00170 1.02717 1.00323 1.94522 1.37828 1.89808 1.16160 1.94677 1.50948 1.37261 1.46923 1.23754 0.96196 0.88329 0.99275 0.92609 0.77449 0.90102 0.90195 0.90077 0.94716 0.83293 0.83251 0.83911 0.89710 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.63 10.75 55.43 0.60 -24.03 16 2 C 0.07 1.93 5.29 -17.82 -0.09 1.84 16 3 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.92 7.49 -34.44 -0.26 -14.18 16 8 H 0.06 1.72 7.79 -52.49 -0.41 1.31 16 9 C 0.27 6.76 0.70 -89.64 -0.06 6.70 16 10 O -0.58 -15.56 13.16 -35.23 -0.46 -16.03 16 11 C -0.15 -3.70 4.63 -24.91 -0.12 -3.82 16 12 C 0.03 0.64 5.96 -2.84 -0.02 0.62 16 13 N -0.48 -9.80 3.36 -167.70 -0.56 -10.36 16 14 C 0.20 3.36 4.66 -83.54 -0.39 2.97 16 15 C 0.00 0.00 5.89 -104.72 -0.62 -0.61 16 16 C 0.22 3.26 7.90 -156.29 -1.23 2.03 16 17 N -0.20 -3.44 10.93 32.14 0.35 -3.08 16 18 N -0.06 -0.84 13.47 60.35 0.81 -0.03 16 19 N -0.24 -2.39 7.90 60.35 0.48 -1.92 16 20 H 0.47 2.23 8.96 -340.36 -3.05 -0.82 16 21 N -0.30 -3.57 12.08 32.16 0.39 -3.18 16 22 C -0.04 -0.43 9.69 -39.28 -0.38 -0.81 16 23 C -0.13 -1.09 10.03 -39.60 -0.40 -1.49 16 24 C -0.05 -0.54 9.93 -39.56 -0.39 -0.94 16 25 C -0.07 -1.10 5.23 -79.79 -0.42 -1.51 16 26 N 0.01 0.16 2.19 34.04 0.07 0.24 16 27 O -0.18 -3.46 18.05 -29.46 -0.53 -3.99 16 28 O -0.07 -1.43 11.36 -29.46 -0.33 -1.76 16 29 C 0.05 1.08 5.13 -2.30 -0.01 1.06 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 31 H 0.38 10.21 7.56 45.56 0.34 10.56 16 32 H 0.08 2.09 7.53 -51.93 -0.39 1.70 16 33 H 0.08 2.03 4.97 -51.93 -0.26 1.77 16 34 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 35 H 0.03 0.71 5.50 -51.93 -0.29 0.42 16 36 H 0.15 1.09 7.88 -52.48 -0.41 0.68 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 39 H 0.09 1.89 4.52 -51.93 -0.23 1.66 16 40 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -32.78 332.09 -9.12 -41.90 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.52 Total: 9.05 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -4.39 Total: -8.15 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 2.14 Total: -42.37 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -1.33 Total: -21.78 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.78 -9.12 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606345590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.034 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds