Wall clock time and date at job start Sat Apr 11 2020 07:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86806 * 119.99426 * 2 1 4 4 H 1.48501 * 109.46929 * 270.00090 * 3 2 1 5 5 H 1.48494 * 109.47183 * 30.00370 * 3 2 1 6 6 H 1.48494 * 109.46699 * 150.00662 * 3 2 1 7 7 C 1.38942 * 120.00420 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00308 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99741 * 359.97438 * 7 2 1 10 10 C 1.34782 * 119.99986 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99664 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00093 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.46911 * 179.97438 * 12 10 9 14 14 C 1.34781 * 119.99685 * 179.97438 * 13 12 10 15 15 O 1.21276 * 119.99841 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99744 * 179.97438 * 14 13 12 17 17 O 1.42897 * 109.46997 * 179.97438 * 16 14 13 18 18 C 1.35906 * 117.00080 * 180.02562 * 17 16 14 19 19 C 1.38829 * 119.99618 * 0.02562 * 18 17 16 20 20 C 1.38198 * 120.18250 * 179.97438 * 19 18 17 21 21 C 1.38085 * 120.17354 * 0.02562 * 20 19 18 22 22 C 1.39305 * 119.99335 * 359.97438 * 21 20 19 23 23 C 1.48470 * 120.08626 * 180.02562 * 22 21 20 24 24 N 1.34053 * 126.66690 * 179.68879 * 23 22 21 25 25 N 1.28993 * 107.26352 * 179.87272 * 24 23 22 26 26 N 1.28725 * 108.94062 * 0.39378 * 25 24 23 27 27 H 0.97005 * 125.34291 * 179.76177 * 26 25 24 28 28 N 1.28877 * 109.32340 * 359.75085 * 26 25 24 29 29 C 1.38515 * 119.99815 * 179.97438 * 18 17 16 30 30 H 0.96996 * 120.00470 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00400 * 0.02562 * 9 7 2 32 32 H 1.08992 * 109.47377 * 59.99547 * 12 10 9 33 33 H 1.09000 * 109.46738 * 299.99508 * 12 10 9 34 34 H 0.96995 * 120.00187 * 359.97438 * 13 12 10 35 35 H 1.09006 * 109.47238 * 59.99683 * 16 14 13 36 36 H 1.09000 * 109.47256 * 299.99560 * 16 14 13 37 37 H 1.07998 * 119.91227 * 359.97438 * 19 18 17 38 38 H 1.07994 * 119.91527 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.00177 * 180.27570 * 21 20 19 40 40 H 1.08000 * 120.08704 * 359.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4954 2.0466 -1.4001 5 1 1.4454 2.6527 0.7001 6 1 3.5456 1.4403 0.6999 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5577 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0016 14 6 1.7468 -7.2471 -0.0017 15 8 0.5545 -7.4687 -0.0008 16 6 2.7262 -8.3925 -0.0028 17 8 2.0118 -9.6300 -0.0020 18 6 2.7520 -10.7698 -0.0023 19 6 4.1384 -10.6970 -0.0028 20 6 4.8949 -11.8535 -0.0025 21 6 4.2758 -13.0878 -0.0023 22 6 2.8851 -13.1694 -0.0019 23 6 2.2173 -14.4954 -0.0011 24 7 0.8969 -14.7267 0.0052 25 7 0.7324 -16.0061 0.0008 26 7 1.8867 -16.5758 0.0003 27 1 2.0397 -17.5337 0.0006 28 7 2.8073 -15.6740 -0.0008 29 6 2.1232 -12.0040 -0.0010 30 1 -0.4850 0.8400 0.0004 31 1 0.3535 -2.3907 -0.0005 32 1 0.6176 -4.9205 -0.8912 33 1 0.6171 -4.9209 0.8887 34 1 3.1497 -5.7991 -0.0019 35 1 3.3536 -8.3349 0.8868 36 1 3.3521 -8.3345 -0.8932 37 1 4.6271 -9.7339 -0.0033 38 1 5.9731 -11.7919 -0.0033 39 1 4.8697 -13.9899 0.0023 40 1 1.0448 -12.0621 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606349887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:38 Heat of formation + Delta-G solvation = 19.037392 kcal Electronic energy + Delta-G solvation = -27338.208975 eV Core-core repulsion = 22962.699848 eV Total energy + Delta-G solvation = -4375.509127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.49983 -41.50608 -40.72366 -39.83795 -38.43683 -36.24867 -35.43168 -35.33430 -34.50409 -33.36941 -32.10808 -31.21547 -30.27062 -28.27779 -26.31150 -25.72392 -25.51600 -23.37200 -22.63701 -21.55797 -21.37105 -20.28137 -20.05096 -19.29319 -18.60559 -18.17886 -17.50845 -17.48787 -17.09101 -16.81332 -16.63976 -16.41334 -16.29444 -15.83466 -15.55010 -15.27816 -15.21448 -14.74511 -14.52031 -14.05783 -13.95302 -13.84936 -13.53113 -13.51668 -13.30664 -12.89592 -12.76725 -12.51472 -12.44055 -12.33617 -12.21314 -12.11549 -12.02092 -11.68249 -11.55296 -11.05453 -10.54984 -10.26578 -10.07662 -9.83301 -9.25333 -8.49710 -6.00032 -0.35866 0.14337 0.41350 1.27635 1.32338 1.37700 1.44142 1.46588 1.49677 1.58023 1.92083 2.27750 2.48154 2.75591 2.77975 3.12911 3.17747 3.18430 3.55354 3.85511 3.98202 4.07198 4.13388 4.20248 4.22417 4.29761 4.38125 4.43559 4.43701 4.46479 4.58589 4.93893 5.19420 5.23552 5.38648 5.39845 5.44077 5.59068 5.65268 5.92819 6.27463 6.45860 6.51016 7.04563 7.08118 7.09250 7.45583 7.94945 8.67048 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.037574 B = 0.001431 C = 0.001380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.017158 B =19558.963817 C =20283.533512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.089 0.911 9 N -0.560 5.560 10 C 0.434 3.566 11 O -0.621 6.621 12 C 0.122 3.878 13 N -0.699 5.699 14 C 0.514 3.486 15 O -0.570 6.570 16 C 0.046 3.954 17 O -0.317 6.317 18 C 0.115 3.885 19 C -0.184 4.184 20 C -0.072 4.072 21 C -0.114 4.114 22 C 0.007 3.993 23 C 0.208 3.792 24 N -0.299 5.299 25 N -0.058 5.058 26 N -0.198 5.198 27 H 0.495 0.505 28 N -0.285 5.285 29 C -0.127 4.127 30 H 0.279 0.721 31 H 0.398 0.602 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.419 0.581 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.151 0.849 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.449 -30.645 -0.013 32.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.107 0.893 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.509 6.509 12 C -0.006 4.006 13 N -0.355 5.355 14 C 0.300 3.700 15 O -0.449 6.449 16 C -0.031 4.031 17 O -0.230 6.230 18 C 0.069 3.931 19 C -0.203 4.203 20 C -0.089 4.089 21 C -0.135 4.135 22 C 0.003 3.997 23 C -0.072 4.072 24 N -0.171 5.171 25 N -0.053 5.053 26 N -0.049 5.049 27 H 0.355 0.645 28 N -0.137 5.137 29 C -0.148 4.148 30 H 0.089 0.911 31 H 0.232 0.768 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.259 0.741 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.180 0.820 38 H 0.188 0.812 39 H 0.169 0.831 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.486 -31.035 -0.004 32.452 hybrid contribution 0.170 0.787 -0.009 0.805 sum 9.656 -30.248 -0.013 31.752 Atomic orbital electron populations 1.69681 1.07055 1.29612 1.49313 1.26121 0.96489 1.02700 0.95779 0.84868 0.77951 0.76505 0.78675 1.19609 1.19854 1.19304 1.19757 0.93045 0.83500 1.50354 0.89341 1.41854 1.09615 1.04663 1.63384 1.20363 0.88134 0.85803 0.83601 1.90472 1.14947 1.87505 1.58001 1.20780 0.91665 0.83772 1.04382 1.45455 1.11757 1.03834 1.74436 1.20617 0.89451 0.83967 0.75953 1.90739 1.18592 1.85068 1.50504 1.22607 0.93085 0.80130 1.07313 1.86120 1.35495 1.12399 1.88986 1.18913 0.90945 0.85373 0.97826 1.21831 0.91311 1.02177 1.04975 1.21290 1.01832 0.90093 0.95712 1.21332 0.91628 1.00015 1.00480 1.16971 0.93160 0.85231 1.04308 1.23777 0.87486 0.93719 1.02220 1.76152 1.16614 1.05519 1.18781 1.78894 1.09759 1.01493 1.15169 1.47824 1.00441 1.13034 1.43621 0.64509 1.74865 1.19487 0.97658 1.21725 1.20288 1.00729 0.89235 1.04584 0.91123 0.76751 0.88750 0.88748 0.74139 0.85295 0.85286 0.81969 0.81214 0.83100 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.16 13.05 21.66 0.28 -47.87 16 2 C -0.01 -0.52 5.50 84.92 0.47 -0.06 16 3 Si 1.00 40.99 29.55 68.60 2.03 43.01 16 4 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 7 C -0.34 -18.15 9.68 84.04 0.81 -17.33 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -27.34 5.29 -306.98 -1.62 -28.96 16 10 C 0.43 19.10 7.85 87.66 0.69 19.78 16 11 O -0.62 -30.27 15.24 -3.08 -0.05 -30.31 16 12 C 0.12 4.20 6.15 85.63 0.53 4.73 16 13 N -0.70 -20.39 5.53 -466.79 -2.58 -22.97 16 14 C 0.51 14.72 7.91 87.66 0.69 15.41 16 15 O -0.57 -21.72 16.50 16.02 0.26 -21.45 16 16 C 0.05 0.87 5.22 71.24 0.37 1.24 16 17 O -0.32 -7.92 9.67 -73.45 -0.71 -8.63 16 18 C 0.11 2.33 6.68 22.48 0.15 2.48 16 19 C -0.18 -2.38 9.03 22.40 0.20 -2.18 16 20 C -0.07 -0.72 10.03 22.22 0.22 -0.49 16 21 C -0.11 -1.49 9.70 22.49 0.22 -1.27 16 22 C 0.01 0.12 5.87 -20.05 -0.12 0.01 16 23 C 0.21 4.11 7.94 137.38 1.09 5.20 16 24 N -0.30 -6.82 12.23 -52.18 -0.64 -7.46 16 25 N -0.06 -1.02 13.47 37.02 0.50 -0.52 16 26 N -0.20 -2.03 7.90 37.02 0.29 -1.73 16 27 H 0.50 -0.20 8.96 -347.53 -3.12 -3.32 16 28 N -0.28 -4.18 12.08 -52.12 -0.63 -4.81 16 29 C -0.13 -2.82 9.64 22.58 0.22 -2.61 16 30 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 31 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 32 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 33 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.42 11.21 7.44 -92.71 -0.69 10.52 16 35 H 0.13 1.58 7.66 -2.38 -0.02 1.56 16 36 H 0.13 1.58 7.66 -2.39 -0.02 1.56 16 37 H 0.16 1.17 6.28 -2.91 -0.02 1.16 16 38 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.15 1.41 7.88 -2.91 -0.02 1.38 16 40 H 0.13 3.17 7.89 -2.91 -0.02 3.15 16 Total: -1.00 -77.70 364.49 -0.69 -78.39 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: -3.37 Total: 28.40 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 5.54 Total: 24.92 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -4.40 Total: -114.33 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: -0.49 Total: -60.40 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -77.70 -0.69 -78.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.426 kcal (2) G-P(sol) polarization free energy of solvation -77.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds