Wall clock time and date at job start Sat Apr 11 2020 07:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00373 * 2 1 4 4 H 1.48500 * 109.47516 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47123 * 300.00791 * 3 2 1 6 6 H 1.48498 * 109.46782 * 60.00286 * 3 2 1 7 7 C 1.37880 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00074 * 159.00989 * 7 2 1 9 9 C 1.50707 * 119.99773 * 339.01380 * 7 2 1 10 10 C 1.52999 * 112.99591 * 293.73063 * 9 7 2 11 11 O 1.45193 * 109.47368 * 299.22866 * 10 9 7 12 12 C 1.34228 * 116.99991 * 176.91497 * 11 10 9 13 13 O 1.20828 * 119.99715 * 5.79215 * 12 11 10 14 14 C 1.50697 * 120.00276 * 185.79861 * 12 11 10 15 15 C 1.50703 * 115.55267 * 83.53278 * 14 12 11 16 16 O 1.20825 * 120.00029 * 97.81809 * 15 14 12 17 17 O 1.34234 * 120.00036 * 277.82441 * 15 14 12 18 18 C 1.52997 * 117.49627 * 297.86779 * 14 12 11 19 19 C 1.53005 * 60.03091 * 252.47141 * 18 14 12 20 20 H 1.08997 * 117.49695 * 107.50355 * 19 18 14 21 21 C 1.50701 * 117.50027 * 252.52124 * 19 18 14 22 22 C 1.38237 * 119.99716 * 8.33337 * 21 19 18 23 23 C 1.38237 * 119.99864 * 179.80712 * 22 21 19 24 24 C 1.38238 * 119.99629 * 0.42343 * 23 22 21 25 25 C 1.38231 * 120.00390 * 359.80929 * 24 23 22 26 26 C 1.38224 * 120.00144 * 188.60689 * 21 19 18 27 27 C 1.54031 * 113.92409 * 65.66618 * 9 7 2 28 28 O 1.44175 * 85.52140 * 91.65823 * 27 9 7 29 29 C 1.44180 * 93.33800 * 24.19001 * 28 27 9 30 30 H 0.96996 * 119.99993 * 5.03679 * 1 2 3 31 31 H 1.09001 * 109.46525 * 179.22467 * 10 9 7 32 32 H 1.08999 * 109.46759 * 59.23608 * 10 9 7 33 33 H 0.96700 * 117.00249 * 179.97438 * 17 15 14 34 34 H 1.08996 * 117.50275 * 359.97168 * 18 14 12 35 35 H 1.09000 * 117.50254 * 144.97183 * 18 14 12 36 36 H 1.08002 * 120.00540 * 0.02562 * 22 21 19 37 37 H 1.07999 * 120.00367 * 180.20664 * 23 22 21 38 38 H 1.08007 * 119.99506 * 179.78754 * 24 23 22 39 39 H 1.08001 * 120.00088 * 179.97438 * 25 24 23 40 40 H 1.08008 * 120.00134 * 359.97438 * 26 21 19 41 41 H 1.09001 * 113.86122 * 205.80847 * 27 9 7 42 42 H 1.09004 * 113.87073 * 337.51096 * 27 9 7 43 43 H 1.08995 * 113.86843 * 221.65934 * 29 28 27 44 44 H 1.09001 * 113.86249 * 89.95321 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0308 -1.2250 -0.3356 9 6 1.3260 -2.4561 0.4663 10 6 0.9821 -2.4336 1.9570 11 8 2.2013 -2.2931 2.7329 12 6 2.0679 -2.1923 4.0647 13 8 0.9806 -2.3251 4.5747 14 6 3.2741 -1.9133 4.9239 15 6 3.6630 -0.4625 5.0470 16 8 3.3143 0.1767 6.0112 17 8 4.3967 0.1196 4.0853 18 6 4.4006 -2.9485 4.9175 19 6 3.4965 -2.8105 6.1441 20 1 2.7703 -3.6027 6.3257 21 6 4.0875 -2.1752 7.3762 22 6 5.3379 -1.5885 7.3193 23 6 5.8784 -1.0023 8.4485 24 6 5.1722 -1.0106 9.6369 25 6 3.9239 -1.6015 9.6950 26 6 3.3818 -2.1843 8.5647 27 6 0.1610 -2.9087 -0.4340 28 8 1.1521 -3.6903 -1.1308 29 6 2.0317 -3.7470 0.0102 30 1 -0.4850 0.8368 -0.0737 31 1 0.4835 -3.3639 2.2289 32 1 0.3204 -1.5926 2.1645 33 1 4.6212 1.0521 4.2082 34 1 4.2692 -3.8316 4.2922 35 1 5.4231 -2.5803 5.0019 36 1 5.8911 -1.5849 6.3917 37 1 6.8538 -0.5409 8.4032 38 1 5.5960 -0.5556 10.5200 39 1 3.3724 -1.6083 10.6236 40 1 2.4066 -2.6462 8.6102 41 1 -0.5890 -3.5073 0.0830 42 1 -0.2700 -2.1072 -1.0339 43 1 3.0844 -3.6103 -0.2372 44 1 1.8529 -4.6016 0.6628 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608179301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:10 Heat of formation + Delta-G solvation = -138.586517 kcal Electronic energy + Delta-G solvation = -30985.768522 eV Core-core repulsion = 26642.379150 eV Total energy + Delta-G solvation = -4343.389372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.46071 -41.35081 -40.72039 -40.15241 -38.03975 -37.35562 -37.19818 -34.91283 -32.12805 -31.86730 -31.58954 -27.92827 -27.18936 -26.94737 -26.06032 -24.91742 -24.19446 -23.25721 -21.86921 -21.01954 -20.79277 -19.42782 -18.89269 -18.57444 -18.15518 -17.77949 -17.47860 -17.04214 -16.67716 -16.50108 -16.20704 -16.16805 -16.02363 -15.86639 -15.53660 -15.05963 -14.49683 -14.46965 -14.21661 -14.00996 -13.86593 -13.85665 -13.51395 -13.02595 -12.95168 -12.72945 -12.69469 -12.59495 -12.36518 -12.24576 -12.14452 -11.91541 -11.85938 -11.80944 -11.51559 -11.34479 -11.29111 -10.97040 -10.73899 -10.15945 -9.82562 -9.60056 -8.22255 -6.24266 0.27886 0.46752 0.52503 1.04226 1.35535 1.41050 1.52042 1.57682 1.91028 2.24307 2.38005 2.89104 2.97015 3.21439 3.24381 3.38557 3.43230 3.75098 3.93803 4.08273 4.09684 4.13310 4.18586 4.25794 4.39639 4.41294 4.50187 4.54005 4.58033 4.63357 4.66904 4.74821 4.87173 5.05781 5.09598 5.13210 5.27135 5.34712 5.46848 5.52431 5.53650 5.54978 5.60198 5.61921 5.74688 6.09166 6.23930 6.56901 6.72103 6.78973 7.37254 8.81813 Molecular weight = 346.13amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.003411 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.868817 B = 8207.846566 C = 9135.555739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.030 3.970 3 Si 0.938 3.062 4 H -0.257 1.257 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.017 3.983 10 C 0.092 3.908 11 O -0.322 6.322 12 C 0.497 3.503 13 O -0.526 6.526 14 C -0.162 4.162 15 C 0.528 3.472 16 O -0.511 6.511 17 O -0.497 6.497 18 C -0.097 4.097 19 C -0.048 4.048 20 H 0.140 0.860 21 C -0.069 4.069 22 C -0.126 4.126 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.117 4.117 27 C 0.051 3.949 28 O -0.404 6.404 29 C 0.042 3.958 30 H 0.264 0.736 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.431 0.569 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.784 -4.717 16.507 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.171 4.171 3 Si 0.764 3.236 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.214 1.214 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.016 3.984 10 C 0.018 3.982 11 O -0.237 6.237 12 C 0.340 3.660 13 O -0.416 6.416 14 C -0.164 4.164 15 C 0.369 3.631 16 O -0.399 6.399 17 O -0.310 6.310 18 C -0.134 4.134 19 C -0.066 4.066 20 H 0.158 0.842 21 C -0.069 4.069 22 C -0.144 4.144 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.144 4.144 26 C -0.135 4.135 27 C -0.026 4.026 28 O -0.323 6.323 29 C -0.035 4.035 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.293 0.707 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.144 0.856 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.119 -4.976 16.596 21.144 hybrid contribution -0.525 1.973 -0.066 2.042 sum 11.594 -3.004 16.530 20.413 Atomic orbital electron populations 1.70000 1.07188 1.27826 1.48899 1.25576 0.95355 1.02004 0.94207 0.85796 0.80429 0.80154 0.77261 1.18007 1.20793 1.21359 1.20748 0.98437 0.90963 1.44274 0.91967 1.21196 0.93948 0.95064 0.88197 1.23356 0.83058 0.99410 0.92363 1.86556 1.38653 1.81150 1.17334 1.22190 0.88428 0.72918 0.82465 1.90634 1.28901 1.46792 1.75245 1.20478 0.99967 0.90613 1.05372 1.21367 0.74661 0.87615 0.79445 1.90732 1.52059 1.64397 1.32672 1.84556 1.65357 1.33667 1.47419 1.23731 0.95019 0.97337 0.97272 1.21509 1.01695 0.96711 0.86666 0.84205 1.19009 0.95106 0.99727 0.93101 1.21227 0.95129 0.98331 0.99717 1.21406 1.00959 0.99061 0.92688 1.21521 0.94913 0.98926 0.98801 1.21425 0.96347 0.97879 0.98714 1.21181 0.99762 0.99844 0.92733 1.23919 0.92080 0.92253 0.94371 1.89475 1.33905 1.75691 1.33230 1.24142 0.95936 0.96733 0.86673 0.92634 0.91968 0.94131 0.70727 0.83953 0.84043 0.85143 0.83837 0.83694 0.84032 0.85605 0.91608 0.89813 0.89533 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.32 11.60 21.45 0.25 -49.07 16 2 C 0.03 1.58 5.20 84.66 0.44 2.02 16 3 Si 0.94 42.18 29.59 68.60 2.03 44.21 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.51 -26.38 8.03 25.60 0.21 -26.17 16 8 H 0.06 3.25 7.90 -2.91 -0.02 3.23 16 9 C 0.02 0.77 0.65 -52.23 -0.03 0.74 16 10 C 0.09 4.12 4.68 71.98 0.34 4.46 16 11 O -0.32 -13.32 9.99 -51.40 -0.51 -13.84 16 12 C 0.50 19.05 7.08 71.23 0.50 19.55 16 13 O -0.53 -22.79 16.80 21.96 0.37 -22.42 16 14 C -0.16 -4.84 2.43 -53.65 -0.13 -4.97 16 15 C 0.53 16.59 6.13 71.24 0.44 17.03 16 16 O -0.51 -18.14 16.23 21.97 0.36 -17.78 16 17 O -0.50 -13.41 13.42 -51.45 -0.69 -14.10 16 18 C -0.10 -1.92 9.28 30.60 0.28 -1.63 16 19 C -0.05 -1.12 5.70 -11.51 -0.07 -1.19 16 20 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 21 C -0.07 -1.61 4.29 -19.87 -0.09 -1.69 16 22 C -0.13 -2.57 7.84 22.27 0.17 -2.40 16 23 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 24 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 25 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 26 C -0.12 -2.64 9.74 22.27 0.22 -2.42 16 27 C 0.05 2.36 7.89 72.27 0.57 2.93 16 28 O -0.40 -18.53 12.40 -148.98 -1.85 -20.38 16 29 C 0.04 1.66 8.34 72.27 0.60 2.27 16 30 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 31 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.04 2.09 7.88 -2.39 -0.02 2.07 16 33 H 0.43 7.63 9.10 -74.06 -0.67 6.96 16 34 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.14 2.12 6.17 -2.39 -0.01 2.10 16 36 H 0.13 2.23 5.94 -2.91 -0.02 2.21 16 37 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 41 H 0.07 2.73 8.10 -2.39 -0.02 2.71 16 42 H 0.08 4.35 6.82 -2.38 -0.02 4.34 16 43 H 0.09 3.31 8.09 -2.39 -0.02 3.29 16 44 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 Total: -1.00 -71.00 381.86 4.46 -66.55 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.38 Total: 24.37 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 4.13 Total: 2.46 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.25 Total: -49.07 kcal Atomic # 8 Polarization: -86.20 SS G_CDS: -2.33 Total: -88.52 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -71.00 4.46 -66.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.041 kcal (2) G-P(sol) polarization free energy of solvation -71.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds