Wall clock time and date at job start Sat Apr 11 2020 07:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99993 * 2 1 4 4 O 1.20824 * 120.00202 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99573 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.46527 * 180.02562 * 5 3 2 7 7 C 1.36761 * 119.99942 * 264.07357 * 6 5 3 8 8 H 1.07995 * 120.00086 * 201.37906 * 7 6 5 9 9 C 1.39126 * 119.99828 * 21.37896 * 7 6 5 10 10 N 1.31314 * 119.99978 * 9.12198 * 9 7 6 11 11 Si 1.86800 * 119.99915 * 189.12164 * 9 7 6 12 12 H 1.48494 * 109.47348 * 89.99879 * 11 9 7 13 13 H 1.48506 * 109.46886 * 209.99981 * 11 9 7 14 14 H 1.48502 * 109.47031 * 329.99642 * 11 9 7 15 15 C 1.34773 * 120.00412 * 84.08089 * 6 5 3 16 16 O 1.21590 * 120.00004 * 5.27009 * 15 6 5 17 17 C 1.47867 * 120.00172 * 185.27609 * 15 6 5 18 18 N 1.32895 * 119.60559 * 75.83499 * 17 15 6 19 19 C 1.31315 * 121.74893 * 180.31134 * 18 17 15 20 20 C 1.39710 * 120.74687 * 359.68285 * 19 18 17 21 21 C 1.48337 * 120.43644 * 180.02562 * 20 19 18 22 22 N 1.34088 * 126.68614 * 179.70945 * 21 20 19 23 23 N 1.28984 * 107.26495 * 179.89047 * 22 21 20 24 24 N 1.28726 * 108.95842 * 0.37601 * 23 22 21 25 25 H 0.97000 * 125.33079 * 179.75807 * 24 23 22 26 26 N 1.28871 * 109.33230 * 359.75748 * 24 23 22 27 27 C 1.39745 * 119.13467 * 0.02562 * 20 19 18 28 28 C 1.38289 * 118.39962 * 0.02562 * 27 20 19 29 29 C 1.50692 * 120.41196 * 179.97438 * 28 27 20 30 30 H 1.09001 * 109.47235 * 59.99809 * 1 2 3 31 31 H 1.09000 * 109.47606 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47058 * 299.99929 * 1 2 3 33 33 H 1.08997 * 109.46926 * 60.00550 * 5 3 2 34 34 H 1.08997 * 109.47403 * 300.00030 * 5 3 2 35 35 H 0.97002 * 120.00106 * 180.02562 * 10 9 7 36 36 H 1.08006 * 119.62891 * 179.70522 * 19 18 17 37 37 H 1.08004 * 120.79748 * 179.97438 * 27 20 19 38 38 H 1.09000 * 109.47600 * 86.19345 * 29 28 27 39 39 H 1.09002 * 109.47408 * 326.19139 * 29 28 27 40 40 H 1.08999 * 109.47520 * 206.19111 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 0.0011 7 6 4.2933 3.3010 -1.1767 8 1 4.9120 4.1861 -1.1731 9 6 3.8131 2.7928 -2.3795 10 7 2.9201 1.8301 -2.3757 11 14 4.4387 3.4801 -3.9999 12 1 5.6309 2.7102 -4.4369 13 1 3.3735 3.3693 -5.0288 14 1 4.8087 4.9073 -3.8224 15 6 4.0569 3.3598 1.1622 16 8 3.8736 2.7838 2.2171 17 6 4.3622 4.8066 1.1531 18 7 3.4188 5.6745 0.8027 19 6 3.6456 6.9676 0.7741 20 6 4.8978 7.4809 1.1212 21 6 5.1463 8.9429 1.0870 22 7 6.2908 9.5684 1.3981 23 7 6.0923 10.8326 1.2365 24 7 4.8792 11.0192 0.8485 25 1 4.4770 11.8815 0.6597 26 7 4.2829 9.8811 0.7502 27 6 5.9132 6.5991 1.5009 28 6 5.6357 5.2444 1.5174 29 6 6.6973 4.2532 1.9190 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9563 0.7805 -0.8892 34 1 3.9557 0.7808 0.8908 35 1 2.5856 1.4755 -3.2143 36 1 2.8551 7.6420 0.4794 37 1 6.8913 6.9667 1.7740 38 1 6.6964 4.1388 3.0029 39 1 7.6729 4.6133 1.5925 40 1 6.4907 3.2902 1.4520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609299212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:15 Heat of formation + Delta-G solvation = 36.028825 kcal Electronic energy + Delta-G solvation = -30349.957010 eV Core-core repulsion = 25975.184687 eV Total energy + Delta-G solvation = -4374.772323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.50141 -41.82805 -41.05330 -39.74080 -37.31937 -36.56487 -35.65009 -34.93411 -34.66335 -33.54461 -32.32752 -30.38531 -28.55270 -27.88548 -27.07350 -25.90168 -25.73709 -24.10081 -22.77084 -22.11194 -21.31913 -20.23286 -19.72870 -18.50772 -18.28895 -18.17351 -17.78138 -17.30466 -17.20482 -16.95634 -16.62801 -16.22187 -15.56078 -15.20660 -15.11953 -15.02156 -14.57537 -14.25002 -14.20187 -13.91213 -13.73301 -13.72218 -13.38877 -13.30728 -13.10384 -12.93362 -12.85464 -12.64831 -12.54899 -12.45374 -12.25044 -12.21804 -12.14570 -11.56389 -11.52078 -11.06496 -10.94599 -10.59303 -10.38477 -9.94157 -9.75123 -8.40887 -6.02577 -0.63196 0.10764 0.22325 1.11983 1.34893 1.37846 1.43334 1.53565 1.59462 1.79720 2.15600 2.30370 2.50631 2.60377 2.78770 3.03577 3.05367 3.55078 3.77300 3.85305 3.93209 4.01382 4.22211 4.28932 4.37065 4.43016 4.44900 4.50413 4.55438 4.68621 4.72035 4.79674 4.81830 4.96205 5.14132 5.17638 5.31821 5.52760 5.57215 5.59636 5.71061 6.25963 6.86376 6.98539 7.06812 7.21431 7.33916 7.71884 8.64849 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003459 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.764449 B = 8093.174137 C = 8769.118253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.374 6.374 3 C 0.487 3.513 4 O -0.538 6.538 5 C 0.152 3.848 6 N -0.416 5.416 7 C -0.334 4.334 8 H 0.096 0.904 9 C 0.004 3.996 10 N -0.895 5.895 11 Si 0.993 3.007 12 H -0.258 1.258 13 H -0.286 1.286 14 H -0.271 1.271 15 C 0.513 3.487 16 O -0.617 6.617 17 C 0.131 3.869 18 N -0.479 5.479 19 C 0.130 3.870 20 C -0.067 4.067 21 C 0.220 3.780 22 N -0.283 5.283 23 N -0.050 5.050 24 N -0.196 5.196 25 H 0.496 0.504 26 N -0.291 5.291 27 C -0.025 4.025 28 C -0.111 4.111 29 C -0.105 4.105 30 H 0.044 0.956 31 H 0.135 0.865 32 H 0.049 0.951 33 H 0.134 0.866 34 H 0.094 0.906 35 H 0.275 0.725 36 H 0.179 0.821 37 H 0.180 0.820 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.361 10.338 2.258 11.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.291 6.291 3 C 0.330 3.670 4 O -0.426 6.426 5 C 0.027 3.973 6 N -0.132 5.132 7 C -0.461 4.461 8 H 0.114 0.886 9 C -0.198 4.198 10 N -0.534 5.534 11 Si 0.817 3.183 12 H -0.183 1.183 13 H -0.212 1.212 14 H -0.196 1.196 15 C 0.302 3.698 16 O -0.504 6.504 17 C -0.008 4.008 18 N -0.188 5.188 19 C -0.032 4.032 20 C -0.073 4.073 21 C -0.061 4.061 22 N -0.155 5.155 23 N -0.045 5.045 24 N -0.048 5.048 25 H 0.355 0.645 26 N -0.144 5.144 27 C -0.052 4.052 28 C -0.114 4.114 29 C -0.162 4.162 30 H 0.063 0.937 31 H 0.153 0.847 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.196 0.804 37 H 0.197 0.803 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.468 10.425 2.445 11.603 hybrid contribution -0.496 0.739 -0.953 1.304 sum 3.972 11.164 1.492 11.943 Atomic orbital electron populations 1.23286 0.76272 1.04855 1.01097 1.86415 1.23988 1.33594 1.85055 1.23986 0.92602 0.80821 0.69604 1.90530 1.67353 1.37684 1.47073 1.20650 0.87244 0.84847 1.04524 1.43328 1.55308 1.08656 1.05947 1.19668 1.30789 1.12783 0.82863 0.88581 1.26055 0.94450 0.96644 1.02643 1.69724 1.27298 1.27561 1.28835 0.84921 0.78043 0.78715 0.76649 1.18289 1.21153 1.19579 1.18029 0.81879 0.86035 0.83872 1.90622 1.57825 1.69916 1.31993 1.21002 0.91015 0.93674 0.95086 1.67717 1.34711 1.03620 1.12738 1.23104 0.95545 0.90580 0.93970 1.18394 0.96245 0.86717 1.05944 1.23178 0.87093 0.94893 1.00896 1.76074 1.22693 0.97507 1.19255 1.78831 1.01170 1.11696 1.12814 1.47769 1.06646 1.09969 1.40374 0.64460 1.74958 1.25186 0.92230 1.22007 1.21619 0.99967 0.90188 0.93421 1.21018 0.94694 0.96174 0.99542 1.20784 0.96573 0.96228 1.02591 0.93709 0.84665 0.93264 0.84825 0.88815 0.91471 0.80437 0.80263 0.89450 0.87409 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 10.56 113.37 1.20 2.52 16 2 O -0.37 -16.20 10.57 -51.43 -0.54 -16.75 16 3 C 0.49 24.87 6.04 71.24 0.43 25.30 16 4 O -0.54 -31.44 15.78 21.97 0.35 -31.09 16 5 C 0.15 7.44 5.18 85.63 0.44 7.88 16 6 N -0.42 -21.47 2.17 -642.88 -1.39 -22.86 16 7 C -0.33 -17.04 9.09 84.14 0.77 -16.27 16 8 H 0.10 4.82 6.94 -2.91 -0.02 4.79 16 9 C 0.00 0.20 5.14 84.98 0.44 0.64 16 10 N -0.90 -46.21 8.77 21.69 0.19 -46.02 16 11 Si 0.99 39.89 29.56 68.60 2.03 41.92 16 12 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 13 H -0.29 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 15 C 0.51 26.34 5.41 86.79 0.47 26.81 16 16 O -0.62 -33.83 16.75 -4.00 -0.07 -33.90 16 17 C 0.13 5.89 4.76 41.84 0.20 6.09 16 18 N -0.48 -21.60 10.28 -184.15 -1.89 -23.49 16 19 C 0.13 4.60 10.86 85.13 0.92 5.53 16 20 C -0.07 -2.04 5.90 -19.87 -0.12 -2.16 16 21 C 0.22 5.75 7.95 137.31 1.09 6.84 16 22 N -0.28 -7.06 12.30 -52.22 -0.64 -7.70 16 23 N -0.05 -1.01 13.47 37.02 0.50 -0.51 16 24 N -0.20 -2.94 7.90 37.02 0.29 -2.64 16 25 H 0.50 2.13 8.96 -347.53 -3.12 -0.98 16 26 N -0.29 -6.41 12.10 -52.17 -0.63 -7.04 16 27 C -0.02 -0.71 9.52 22.65 0.22 -0.50 16 28 C -0.11 -3.90 5.92 -19.55 -0.12 -4.02 16 29 C -0.10 -3.07 9.69 71.23 0.69 -2.38 16 30 H 0.04 1.63 8.13 -2.39 -0.02 1.61 16 31 H 0.14 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 33 H 0.13 6.39 6.32 -2.39 -0.02 6.38 16 34 H 0.09 4.24 7.53 -2.39 -0.02 4.23 16 35 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 36 H 0.18 5.42 7.89 -2.91 -0.02 5.40 16 37 H 0.18 3.95 7.96 -2.91 -0.02 3.92 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 39 H 0.11 2.30 8.12 -2.39 -0.02 2.28 16 40 H 0.05 1.78 6.93 -2.39 -0.02 1.76 16 Total: -1.00 -77.15 358.51 2.84 -74.31 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -1.98 Total: 19.48 kcal Atomic # 6 Polarization: 49.65 SS G_CDS: 6.63 Total: 56.28 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -3.58 Total: -110.26 kcal Atomic # 8 Polarization: -81.47 SS G_CDS: -0.26 Total: -81.74 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -77.15 2.84 -74.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609299212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.340 kcal (2) G-P(sol) polarization free energy of solvation -77.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds