Wall clock time and date at job start Sat Apr 11 2020 07:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99647 * 2 1 4 4 H 1.48502 * 109.47241 * 240.00377 * 3 2 1 5 5 H 1.48501 * 109.47184 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47039 * 119.99927 * 3 2 1 7 7 C 1.37875 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99589 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.62870 * 56.89659 * 9 7 2 11 11 C 1.55422 * 110.84473 * 293.70752 * 9 7 2 12 12 C 1.54908 * 101.52379 * 205.90691 * 11 9 7 13 13 N 1.47846 * 104.89238 * 37.06612 * 12 11 9 14 14 C 1.39461 * 110.99988 * 213.58060 * 13 12 11 15 15 C 1.38793 * 120.13344 * 59.84840 * 14 13 12 16 16 C 1.38129 * 120.03708 * 179.78958 * 15 14 13 17 17 C 1.38415 * 120.31426 * 0.46784 * 16 15 14 18 18 N 1.48020 * 119.85617 * 179.76726 * 17 16 15 19 19 O 1.21800 * 119.99741 * 180.02562 * 18 17 16 20 20 O 1.21806 * 120.00740 * 0.02562 * 18 17 16 21 21 C 1.38018 * 120.27874 * 359.78481 * 17 16 15 22 22 C 1.39241 * 119.95179 * 359.97438 * 21 17 16 23 23 C 1.48371 * 120.15647 * 180.02562 * 22 21 17 24 24 N 1.34080 * 126.68061 * 179.66428 * 23 22 21 25 25 N 1.28987 * 107.25907 * 179.83856 * 24 23 22 26 26 N 1.28726 * 108.95909 * 0.43751 * 25 24 23 27 27 H 0.96991 * 125.33654 * 179.70408 * 26 25 24 28 28 N 1.28870 * 109.32380 * 359.71965 * 26 25 24 29 29 C 1.47448 * 108.56553 * 335.84749 * 13 12 11 30 30 H 0.96995 * 120.00277 * 359.97438 * 1 2 3 31 31 H 0.96698 * 114.00401 * 303.09952 * 10 9 7 32 32 H 1.08998 * 111.10859 * 87.83844 * 11 9 7 33 33 H 1.08998 * 111.00401 * 323.92963 * 11 9 7 34 34 H 1.09002 * 110.37460 * 278.18013 * 12 11 9 35 35 H 1.08999 * 110.37548 * 155.95084 * 12 11 9 36 36 H 1.08000 * 119.98351 * 0.02562 * 15 14 13 37 37 H 1.07998 * 119.84312 * 180.23384 * 16 15 14 38 38 H 1.07991 * 120.02132 * 179.97438 * 21 17 16 39 39 H 1.08999 * 109.88737 * 120.39623 * 29 13 12 40 40 H 1.09000 * 109.88899 * 241.58505 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.3673 -2.5691 -1.1224 11 6 0.4683 -2.6869 1.3278 12 6 0.3696 -4.2305 1.4133 13 7 1.6598 -4.7236 0.8862 14 6 1.4942 -5.9314 0.2089 15 6 0.6571 -6.0017 -0.8959 16 6 0.4979 -7.1980 -1.5678 17 6 1.1627 -8.3339 -1.1392 18 7 0.9807 -9.6117 -1.8637 19 8 1.5641 -10.6129 -1.4884 20 8 0.2476 -9.6622 -2.8351 21 6 1.9943 -8.2800 -0.0389 22 6 2.1669 -7.0788 0.6438 23 6 3.0602 -7.0156 1.8268 24 7 3.3254 -5.9339 2.5733 25 7 4.1417 -6.3007 3.5022 26 7 4.4008 -7.5536 3.3605 27 1 4.9916 -8.0720 3.9287 28 7 3.7524 -8.0110 2.3451 29 6 2.2285 -3.6933 -0.0023 30 1 -0.4850 0.8400 0.0004 31 1 -0.2676 -1.8412 -1.1687 32 1 -0.5218 -2.2351 1.2675 33 1 1.0288 -2.2843 2.1714 34 1 -0.4547 -4.5926 0.7989 35 1 0.2373 -4.5455 2.4484 36 1 0.1328 -5.1196 -1.2328 37 1 -0.1513 -7.2482 -2.4294 38 1 2.5106 -9.1688 0.2921 39 1 3.2016 -3.3763 0.3729 40 1 2.3293 -4.0896 -1.0127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609494482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:37 Heat of formation + Delta-G solvation = 121.276965 kcal Electronic energy + Delta-G solvation = -30572.730804 eV Core-core repulsion = 26201.655118 eV Total energy + Delta-G solvation = -4371.075687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.41628 -42.20166 -40.36210 -38.00312 -36.58661 -35.05204 -34.36871 -33.74127 -32.19559 -31.64722 -30.96283 -28.94216 -28.35791 -26.07178 -24.95421 -24.60776 -24.28711 -22.59399 -21.72790 -20.52559 -19.75477 -19.71535 -18.70038 -18.59974 -17.55537 -17.26794 -17.10416 -16.88986 -15.79870 -15.60399 -15.00978 -14.65616 -14.27228 -14.14477 -13.86364 -13.73303 -13.51578 -12.81605 -12.48343 -12.17511 -12.10031 -11.92383 -11.86639 -11.58562 -11.39692 -11.33506 -11.23380 -11.16777 -11.13277 -11.10594 -10.96080 -10.82841 -10.61535 -10.51936 -10.10197 -9.66411 -9.27592 -9.01496 -8.72558 -8.27709 -8.09049 -6.32420 -4.39134 -0.22808 0.40935 1.15827 1.27997 1.34035 2.19815 2.25155 3.19298 3.22930 3.24436 3.27790 3.52927 3.92467 4.10080 4.24038 4.36896 4.57201 4.80294 4.90600 4.93937 5.22425 5.30654 5.44421 5.48767 5.58772 5.65328 5.78472 5.85120 5.91921 6.07377 6.13414 6.18232 6.30029 6.34371 6.39856 6.74791 6.86313 7.12359 7.32033 7.37586 7.54479 7.62112 7.71029 7.97949 8.22421 8.61751 9.26797 9.36252 10.75110 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.003667 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.134281 B = 7634.671574 C = 9504.593240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.073 3.927 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.241 3.759 10 O -0.594 6.594 11 C -0.128 4.128 12 C 0.047 3.953 13 N -0.489 5.489 14 C 0.201 3.799 15 C -0.145 4.145 16 C -0.029 4.029 17 C -0.063 4.063 18 N 0.035 4.965 19 O -0.167 6.167 20 O -0.163 6.163 21 C -0.017 4.017 22 C -0.008 4.008 23 C 0.221 3.779 24 N -0.202 5.202 25 N -0.060 5.060 26 N -0.234 5.234 27 H 0.472 0.528 28 N -0.300 5.300 29 C 0.065 3.935 30 H 0.269 0.731 31 H 0.388 0.612 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.169 0.831 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.091 0.909 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -13.892 3.872 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.129 4.129 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.081 0.919 9 C 0.201 3.799 10 O -0.405 6.405 11 C -0.167 4.167 12 C -0.078 4.078 13 N -0.211 5.211 14 C 0.103 3.897 15 C -0.166 4.166 16 C -0.050 4.050 17 C -0.146 4.146 18 N 0.554 4.446 19 O -0.381 6.381 20 O -0.379 6.379 21 C -0.038 4.038 22 C -0.013 4.013 23 C -0.059 4.059 24 N -0.074 5.074 25 N -0.056 5.056 26 N -0.079 5.079 27 H 0.326 0.674 28 N -0.152 5.152 29 C -0.060 4.060 30 H 0.079 0.921 31 H 0.240 0.760 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.186 0.814 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.109 0.891 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.058 -13.446 5.048 14.925 hybrid contribution -0.241 0.643 -0.639 0.938 sum 3.818 -12.803 4.409 14.069 Atomic orbital electron populations 1.69549 1.05964 1.27789 1.50609 1.24970 0.94985 0.99491 0.93490 0.86501 0.79582 0.82196 0.78862 1.20092 1.21158 1.20009 1.21501 0.93634 0.90382 1.51587 0.91872 1.19714 0.86045 0.91492 0.82697 1.86000 1.51685 1.53591 1.49258 1.23246 1.02228 0.90240 1.00992 1.23241 0.87339 0.98307 0.98898 1.61523 1.25518 1.00606 1.33450 1.19606 0.88561 0.92187 0.89334 1.22210 0.99956 0.98646 0.95776 1.21113 0.95261 0.89759 0.98860 1.20812 1.09054 0.84946 0.99802 1.43522 0.98550 1.02528 1.00021 1.94528 1.47731 1.25038 1.70846 1.94536 1.34445 1.91900 1.16973 1.20775 0.93648 0.98590 0.90827 1.16897 0.98752 0.92401 0.93276 1.23019 0.98911 0.85765 0.98167 1.76631 1.07969 1.22622 1.00210 1.79109 1.12124 0.95553 1.18778 1.47722 1.32128 1.07873 1.20166 0.67406 1.74875 1.11072 1.26644 1.02644 1.23048 0.99365 0.90241 0.93303 0.92095 0.76002 0.90334 0.91147 0.93700 0.91215 0.81364 0.82614 0.82110 0.89118 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.38 10.70 55.43 0.59 -21.79 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 3 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 4 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.53 -13.25 8.22 -34.44 -0.28 -13.53 16 8 H 0.06 1.58 7.53 -52.48 -0.40 1.18 16 9 C 0.24 5.32 0.86 -89.79 -0.08 5.24 16 10 O -0.59 -13.43 12.43 -35.23 -0.44 -13.87 16 11 C -0.13 -2.65 5.69 -24.44 -0.14 -2.79 16 12 C 0.05 0.82 6.52 -2.30 -0.01 0.80 16 13 N -0.49 -8.39 3.37 -167.69 -0.56 -8.95 16 14 C 0.20 3.04 4.63 -83.55 -0.39 2.66 16 15 C -0.15 -2.01 7.83 -39.42 -0.31 -2.32 16 16 C -0.03 -0.36 9.54 -39.56 -0.38 -0.74 16 17 C -0.06 -0.81 6.85 -79.96 -0.55 -1.36 16 18 N 0.04 0.50 4.45 33.96 0.15 0.65 16 19 O -0.17 -2.42 18.43 -29.46 -0.54 -2.96 16 20 O -0.16 -2.38 18.43 -29.46 -0.54 -2.92 16 21 C -0.02 -0.21 9.20 -39.29 -0.36 -0.57 16 22 C -0.01 -0.11 5.89 -104.72 -0.62 -0.73 16 23 C 0.22 3.14 7.90 -156.28 -1.23 1.91 16 24 N -0.20 -3.16 10.93 32.15 0.35 -2.81 16 25 N -0.06 -0.78 13.47 60.35 0.81 0.03 16 26 N -0.23 -2.23 7.90 60.35 0.48 -1.75 16 27 H 0.47 2.04 8.96 -340.37 -3.05 -1.01 16 28 N -0.30 -3.54 12.08 32.16 0.39 -3.15 16 29 C 0.06 1.27 5.90 -2.83 -0.02 1.25 16 30 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 31 H 0.39 9.19 6.98 45.56 0.32 9.51 16 32 H 0.08 1.71 7.77 -51.93 -0.40 1.31 16 33 H 0.07 1.54 8.05 -51.93 -0.42 1.12 16 34 H 0.04 0.74 6.72 -51.93 -0.35 0.39 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.17 2.51 7.01 -52.49 -0.37 2.14 16 37 H 0.16 1.65 7.59 -52.49 -0.40 1.25 16 38 H 0.16 1.83 7.42 -52.49 -0.39 1.44 16 39 H 0.09 1.85 7.63 -51.93 -0.40 1.45 16 40 H 0.05 1.00 6.98 -51.93 -0.36 0.64 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -27.53 346.48 -9.34 -36.87 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.77 Total: 9.15 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -4.46 Total: -8.47 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 2.21 Total: -37.76 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -1.52 Total: -19.76 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.53 -9.34 -36.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.149 kcal (2) G-P(sol) polarization free energy of solvation -27.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds