Wall clock time and date at job start Sat Apr 11 2020 07:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99647 * 2 1 4 4 H 1.48502 * 109.47241 * 240.00377 * 3 2 1 5 5 H 1.48501 * 109.47184 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47039 * 119.99927 * 3 2 1 7 7 C 1.37875 * 120.00392 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99995 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99589 * 0.02562 * 7 2 1 10 10 O 1.42898 * 110.62870 * 56.89659 * 9 7 2 11 11 C 1.55422 * 110.84473 * 293.70752 * 9 7 2 12 12 C 1.54908 * 101.52379 * 205.90691 * 11 9 7 13 13 N 1.47846 * 104.89238 * 37.06612 * 12 11 9 14 14 C 1.39461 * 110.99988 * 213.58060 * 13 12 11 15 15 C 1.38793 * 120.13344 * 59.84840 * 14 13 12 16 16 C 1.38129 * 120.03708 * 179.78958 * 15 14 13 17 17 C 1.38415 * 120.31426 * 0.46784 * 16 15 14 18 18 N 1.48020 * 119.85617 * 179.76726 * 17 16 15 19 19 O 1.21800 * 119.99741 * 180.02562 * 18 17 16 20 20 O 1.21806 * 120.00740 * 0.02562 * 18 17 16 21 21 C 1.38018 * 120.27874 * 359.78481 * 17 16 15 22 22 C 1.39241 * 119.95179 * 359.97438 * 21 17 16 23 23 C 1.48371 * 120.15647 * 180.02562 * 22 21 17 24 24 N 1.34080 * 126.68061 * 179.66428 * 23 22 21 25 25 N 1.28987 * 107.25907 * 179.83856 * 24 23 22 26 26 N 1.28726 * 108.95909 * 0.43751 * 25 24 23 27 27 H 0.96991 * 125.33654 * 179.70408 * 26 25 24 28 28 N 1.28870 * 109.32380 * 359.71965 * 26 25 24 29 29 C 1.47448 * 108.56553 * 335.84749 * 13 12 11 30 30 H 0.96995 * 120.00277 * 359.97438 * 1 2 3 31 31 H 0.96698 * 114.00401 * 303.09952 * 10 9 7 32 32 H 1.08998 * 111.10859 * 87.83844 * 11 9 7 33 33 H 1.08998 * 111.00401 * 323.92963 * 11 9 7 34 34 H 1.09002 * 110.37460 * 278.18013 * 12 11 9 35 35 H 1.08999 * 110.37548 * 155.95084 * 12 11 9 36 36 H 1.08000 * 119.98351 * 0.02562 * 15 14 13 37 37 H 1.07998 * 119.84312 * 180.23384 * 16 15 14 38 38 H 1.07991 * 120.02132 * 179.97438 * 21 17 16 39 39 H 1.08999 * 109.88737 * 120.39623 * 29 13 12 40 40 H 1.09000 * 109.88899 * 241.58505 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.3673 -2.5691 -1.1224 11 6 0.4683 -2.6869 1.3278 12 6 0.3696 -4.2305 1.4133 13 7 1.6598 -4.7236 0.8862 14 6 1.4942 -5.9314 0.2089 15 6 0.6571 -6.0017 -0.8959 16 6 0.4979 -7.1980 -1.5678 17 6 1.1627 -8.3339 -1.1392 18 7 0.9807 -9.6117 -1.8637 19 8 1.5641 -10.6129 -1.4884 20 8 0.2476 -9.6622 -2.8351 21 6 1.9943 -8.2800 -0.0389 22 6 2.1669 -7.0788 0.6438 23 6 3.0602 -7.0156 1.8268 24 7 3.3254 -5.9339 2.5733 25 7 4.1417 -6.3007 3.5022 26 7 4.4008 -7.5536 3.3605 27 1 4.9916 -8.0720 3.9287 28 7 3.7524 -8.0110 2.3451 29 6 2.2285 -3.6933 -0.0023 30 1 -0.4850 0.8400 0.0004 31 1 -0.2676 -1.8412 -1.1687 32 1 -0.5218 -2.2351 1.2675 33 1 1.0288 -2.2843 2.1714 34 1 -0.4547 -4.5926 0.7989 35 1 0.2373 -4.5455 2.4484 36 1 0.1328 -5.1196 -1.2328 37 1 -0.1513 -7.2482 -2.4294 38 1 2.5106 -9.1688 0.2921 39 1 3.2016 -3.3763 0.3729 40 1 2.3293 -4.0896 -1.0127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609494482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:35 Heat of formation + Delta-G solvation = 103.707058 kcal Electronic energy + Delta-G solvation = -30573.492693 eV Core-core repulsion = 26201.655118 eV Total energy + Delta-G solvation = -4371.837575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -45.39454 -43.30003 -41.60069 -39.40756 -37.69824 -36.61235 -35.40225 -34.75095 -34.08566 -32.98024 -31.98960 -30.33450 -29.98468 -27.38510 -26.32427 -25.82339 -25.38094 -23.78339 -22.81599 -21.94641 -21.37729 -20.76832 -19.78741 -19.58909 -19.09878 -18.64554 -18.20286 -18.06888 -16.94091 -16.87436 -16.66859 -16.19890 -15.70108 -15.39716 -15.28356 -14.84680 -14.72908 -14.12363 -13.89842 -13.81619 -13.43236 -13.27664 -13.15707 -12.98419 -12.80673 -12.69380 -12.55492 -12.37049 -12.34035 -12.31656 -12.29205 -12.18201 -12.11944 -12.01602 -11.86498 -11.30397 -10.62690 -10.42874 -10.10990 -10.07447 -9.47953 -8.21195 -6.33849 -1.33793 -0.61108 0.10915 0.23833 0.25401 1.19181 1.43262 1.44414 1.45318 1.51546 2.15280 2.40132 2.53320 2.65620 3.03503 3.06877 3.34969 3.55076 3.71176 3.75895 3.86198 4.17461 4.22591 4.28446 4.38595 4.43590 4.45835 4.50379 4.53235 4.61731 4.81960 4.88610 5.03775 5.11096 5.25668 5.28107 5.47334 5.57494 5.67284 5.73648 5.83952 6.14538 6.21225 6.48791 6.68852 7.23032 7.36578 7.46878 8.83885 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.003667 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.134281 B = 7634.671574 C = 9504.593240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.037 3.963 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.557 4.557 8 H 0.053 0.947 9 C 0.231 3.769 10 O -0.593 6.593 11 C -0.120 4.120 12 C 0.058 3.942 13 N -0.485 5.485 14 C 0.183 3.817 15 C -0.143 4.143 16 C -0.016 4.016 17 C -0.061 4.061 18 N 0.036 4.964 19 O -0.170 6.170 20 O -0.170 6.170 21 C -0.004 4.004 22 C -0.006 4.006 23 C 0.206 3.794 24 N -0.240 5.240 25 N -0.069 5.069 26 N -0.201 5.201 27 H 0.493 0.507 28 N -0.288 5.288 29 C 0.078 3.922 30 H 0.270 0.730 31 H 0.381 0.619 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.159 0.841 37 H 0.176 0.824 38 H 0.176 0.824 39 H 0.077 0.923 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.556 -15.483 4.050 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.164 4.164 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.595 4.595 8 H 0.071 0.929 9 C 0.191 3.809 10 O -0.403 6.403 11 C -0.159 4.159 12 C -0.067 4.067 13 N -0.206 5.206 14 C 0.085 3.915 15 C -0.164 4.164 16 C -0.036 4.036 17 C -0.144 4.144 18 N 0.553 4.447 19 O -0.385 6.385 20 O -0.385 6.385 21 C -0.026 4.026 22 C -0.011 4.011 23 C -0.074 4.074 24 N -0.112 5.112 25 N -0.065 5.065 26 N -0.051 5.051 27 H 0.352 0.648 28 N -0.142 5.142 29 C -0.048 4.048 30 H 0.079 0.921 31 H 0.232 0.768 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.176 0.824 37 H 0.193 0.807 38 H 0.193 0.807 39 H 0.095 0.905 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.500 -15.058 5.238 16.566 hybrid contribution -0.309 1.025 -0.656 1.256 sum 4.191 -14.033 4.582 15.346 Atomic orbital electron populations 1.69621 1.06550 1.28234 1.50650 1.25541 0.95736 1.01794 0.93338 0.85703 0.78553 0.79362 0.78532 1.20169 1.20715 1.20063 1.21806 0.93526 0.92114 1.52085 0.92875 1.19820 0.86427 0.91600 0.83045 1.85997 1.51530 1.53066 1.49672 1.23008 1.00666 0.92697 0.99532 1.23115 0.87962 0.95704 0.99895 1.61388 1.25249 1.00697 1.33236 1.19615 0.90076 0.91618 0.90230 1.22011 0.99877 0.98859 0.95668 1.21212 0.94738 0.88813 0.98830 1.20849 1.09156 0.84612 0.99792 1.43620 0.98395 1.02716 0.99973 1.94528 1.47737 1.25357 1.70838 1.94540 1.34663 1.92021 1.17247 1.20836 0.93068 0.98491 0.90173 1.16860 0.98508 0.92293 0.93402 1.23074 0.99726 0.85977 0.98590 1.76606 1.09338 1.23932 1.01310 1.79045 1.12206 0.96677 1.18536 1.47786 1.30859 1.07185 1.19264 0.64766 1.74845 1.10656 1.25913 1.02787 1.22765 0.98191 0.90123 0.93708 0.92071 0.76797 0.91887 0.92989 0.92686 0.90077 0.82380 0.80686 0.80663 0.90471 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.81 10.70 21.45 0.23 -45.58 16 2 C 0.04 1.83 5.28 84.65 0.45 2.28 16 3 Si 0.95 40.76 29.54 68.60 2.03 42.78 16 4 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.56 -28.28 8.22 25.60 0.21 -28.07 16 8 H 0.05 2.73 7.53 -2.91 -0.02 2.71 16 9 C 0.23 10.40 0.86 -10.26 -0.01 10.39 16 10 O -0.59 -27.13 12.43 -148.98 -1.85 -28.98 16 11 C -0.12 -5.06 5.69 32.08 0.18 -4.88 16 12 C 0.06 2.00 6.52 86.77 0.57 2.57 16 13 N -0.48 -16.48 3.37 -684.45 -2.30 -18.78 16 14 C 0.18 5.32 4.63 38.47 0.18 5.50 16 15 C -0.14 -3.78 7.83 22.38 0.18 -3.61 16 16 C -0.02 -0.35 9.54 22.29 0.21 -0.14 16 17 C -0.06 -1.43 6.85 36.37 0.25 -1.18 16 18 N 0.04 0.93 4.45 -46.48 -0.21 0.72 16 19 O -0.17 -4.54 18.43 18.89 0.35 -4.19 16 20 O -0.17 -4.61 18.43 18.88 0.35 -4.26 16 21 C 0.00 -0.09 9.20 22.46 0.21 0.12 16 22 C -0.01 -0.15 5.89 -19.93 -0.12 -0.26 16 23 C 0.21 5.54 7.90 137.33 1.08 6.62 16 24 N -0.24 -7.31 10.93 -52.21 -0.57 -7.88 16 25 N -0.07 -1.72 13.47 37.02 0.50 -1.22 16 26 N -0.20 -3.36 7.90 37.02 0.29 -3.06 16 27 H 0.49 2.91 8.96 -347.54 -3.12 -0.21 16 28 N -0.29 -6.13 12.08 -52.16 -0.63 -6.76 16 29 C 0.08 3.06 5.90 86.65 0.51 3.58 16 30 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 31 H 0.38 18.39 6.98 -74.06 -0.52 17.88 16 32 H 0.06 2.81 7.77 -2.39 -0.02 2.79 16 33 H 0.05 2.34 8.05 -2.39 -0.02 2.32 16 34 H 0.05 1.78 6.72 -2.39 -0.02 1.76 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.16 4.59 7.01 -2.91 -0.02 4.56 16 37 H 0.18 3.26 7.59 -2.91 -0.02 3.24 16 38 H 0.18 3.48 7.42 -2.92 -0.02 3.45 16 39 H 0.08 3.23 7.63 -2.39 -0.02 3.21 16 40 H 0.05 2.03 6.98 -2.39 -0.02 2.01 16 Total: -1.00 -58.44 346.48 -0.40 -58.84 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -2.48 Total: 25.46 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 3.90 Total: -7.09 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -2.69 Total: -82.56 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.16 Total: -37.44 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Total: -58.44 -0.40 -58.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.548 kcal (2) G-P(sol) polarization free energy of solvation -58.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds