Wall clock time and date at job start Sat Apr 11 2020 07:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99875 * 2 1 4 4 H 1.48502 * 109.47237 * 265.67149 * 3 2 1 5 5 H 1.48502 * 109.46844 * 25.67143 * 3 2 1 6 6 H 1.48503 * 109.47144 * 145.66791 * 3 2 1 7 7 C 1.37879 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99554 * 353.52558 * 7 2 1 9 9 C 1.50698 * 120.00221 * 173.52001 * 7 2 1 10 10 O 1.42895 * 110.62817 * 322.76028 * 9 7 2 11 11 C 1.55143 * 110.85644 * 199.54798 * 9 7 2 12 12 C 1.54898 * 101.65119 * 205.89581 * 11 9 7 13 13 N 1.47847 * 104.79837 * 37.07242 * 12 11 9 14 14 C 1.39561 * 110.99531 * 213.63315 * 13 12 11 15 15 C 1.39038 * 119.95616 * 157.28159 * 14 13 12 16 16 C 1.37834 * 120.04699 * 180.27406 * 15 14 13 17 17 C 1.39387 * 119.95522 * 359.72630 * 16 15 14 18 18 C 1.48415 * 120.04429 * 179.97438 * 17 16 15 19 19 N 1.34064 * 126.68078 * 186.24084 * 18 17 16 20 20 N 1.28983 * 107.26979 * 179.89777 * 19 18 17 21 21 N 1.28736 * 108.94980 * 0.37243 * 20 19 18 22 22 H 0.96992 * 125.34020 * 179.78938 * 21 20 19 23 23 N 1.28870 * 109.31791 * 359.76467 * 21 20 19 24 24 C 1.39347 * 119.91647 * 359.97438 * 17 16 15 25 25 N 1.48022 * 120.02256 * 179.97438 * 24 17 16 26 26 O 1.21803 * 120.00070 * 227.52552 * 25 24 17 27 27 O 1.21794 * 120.00352 * 47.52344 * 25 24 17 28 28 C 1.37883 * 119.95751 * 359.97438 * 24 17 16 29 29 C 1.47433 * 108.56495 * 335.89997 * 13 12 11 30 30 H 0.97001 * 120.00529 * 359.97438 * 1 2 3 31 31 H 0.96697 * 114.00255 * 297.97275 * 10 9 7 32 32 H 1.08993 * 110.98912 * 323.98983 * 11 9 7 33 33 H 1.09004 * 110.98766 * 87.80526 * 11 9 7 34 34 H 1.09004 * 110.37359 * 278.23479 * 12 11 9 35 35 H 1.09009 * 110.37344 * 155.90130 * 12 11 9 36 36 H 1.08012 * 119.97755 * 0.02562 * 15 14 13 37 37 H 1.07999 * 120.02471 * 179.70633 * 16 15 14 38 38 H 1.07995 * 119.98375 * 179.97438 * 28 24 17 39 39 H 1.09001 * 109.88762 * 120.40038 * 29 13 12 40 40 H 1.09003 * 109.89451 * 241.42135 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5881 1.9936 -1.3961 5 1 1.4036 2.6773 0.6065 6 1 3.4978 1.4684 0.7896 7 6 2.0046 -1.1940 -0.0005 8 1 1.4697 -2.1264 0.1045 9 6 3.5043 -1.1980 -0.1478 10 8 3.9233 -0.1817 -1.0608 11 6 4.0105 -2.5907 -0.6073 12 6 5.4580 -2.5951 -0.0559 13 7 5.3688 -1.8971 1.2444 14 6 6.5318 -1.1700 1.5024 15 6 6.4984 -0.0979 2.3870 16 6 7.6446 0.6250 2.6389 17 6 8.8391 0.2771 2.0104 18 6 10.0743 1.0544 2.2798 19 7 11.2587 0.9136 1.6676 20 7 12.0641 1.7757 2.1888 21 7 11.4373 2.4368 3.0984 22 1 11.8196 3.1425 3.6429 23 7 10.2221 2.0141 3.1716 24 6 8.8720 -0.8017 1.1289 25 7 10.1391 -1.1729 0.4598 26 8 10.1557 -1.3823 -0.7399 27 8 11.1652 -1.2690 1.1089 28 6 7.7236 -1.5231 0.8804 29 6 4.1878 -1.0150 1.2236 30 1 -0.4851 0.8400 0.0004 31 1 3.5843 -0.2960 -1.9592 32 1 3.4192 -3.3887 -0.1583 33 1 4.0066 -2.6684 -1.6946 34 1 6.1229 -2.0564 -0.7311 35 1 5.8071 -3.6180 0.0856 36 1 5.5726 0.1712 2.8741 37 1 7.6171 1.4607 3.3224 38 1 7.7486 -2.3589 0.1970 39 1 3.5003 -1.2969 2.0211 40 1 4.4974 0.0224 1.3508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609494880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:48 Heat of formation + Delta-G solvation = 139.996856 kcal Electronic energy + Delta-G solvation = -30604.537941 eV Core-core repulsion = 26234.274010 eV Total energy + Delta-G solvation = -4370.263931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.70624 -42.03360 -40.57764 -38.38801 -36.34782 -35.74709 -34.53468 -33.62331 -32.52977 -32.33269 -31.35876 -29.11062 -28.67769 -26.60637 -25.08591 -24.89959 -24.07672 -22.73280 -22.06675 -20.87223 -20.00173 -19.73346 -18.59383 -18.46623 -17.61960 -17.39321 -17.30583 -17.08647 -16.33655 -15.63443 -15.33782 -15.12864 -14.49747 -14.36933 -14.27627 -13.86644 -13.43652 -13.12868 -12.95366 -12.80516 -12.43789 -12.35365 -11.96250 -11.81411 -11.77439 -11.58513 -11.46978 -11.33510 -11.16591 -11.03742 -10.89153 -10.74424 -10.62792 -10.51274 -10.38327 -9.79153 -9.60700 -9.37422 -8.80621 -8.72582 -7.96949 -6.34689 -4.47449 -0.05908 0.53522 0.91711 1.20646 1.43588 1.95512 2.01361 3.15061 3.27739 3.28343 3.37598 3.47621 3.79465 3.84576 4.30521 4.32674 4.62575 4.70670 4.77592 4.80576 4.92621 4.94359 5.11678 5.21404 5.27367 5.40903 5.45457 5.60299 5.67460 5.74672 5.85758 5.90369 6.04971 6.10550 6.17113 6.31460 6.50637 6.52452 6.80643 6.84073 7.09025 7.30019 7.81000 7.87783 7.98435 8.48388 8.68372 9.26059 10.74325 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.016588 B = 0.003337 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.544015 B = 8390.001589 C = 9376.744690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.077 3.923 3 Si 0.937 3.063 4 H -0.287 1.287 5 H -0.319 1.319 6 H -0.271 1.271 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.210 3.790 10 O -0.570 6.570 11 C -0.142 4.142 12 C 0.032 3.968 13 N -0.472 5.472 14 C 0.166 3.834 15 C -0.126 4.126 16 C -0.039 4.039 17 C -0.018 4.018 18 C 0.207 3.793 19 N -0.245 5.245 20 N -0.042 5.042 21 N -0.228 5.228 22 H 0.476 0.524 23 N -0.286 5.286 24 C 0.036 3.964 25 N 0.020 4.980 26 O -0.171 6.171 27 O -0.100 6.100 28 C -0.122 4.122 29 C 0.040 3.960 30 H 0.268 0.732 31 H 0.375 0.625 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.105 0.895 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.007 2.335 6.206 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.129 4.129 3 Si 0.771 3.229 4 H -0.214 1.214 5 H -0.250 1.250 6 H -0.197 1.197 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.170 3.830 10 O -0.378 6.378 11 C -0.181 4.181 12 C -0.093 4.093 13 N -0.181 5.181 14 C 0.061 3.939 15 C -0.147 4.147 16 C -0.060 4.060 17 C -0.024 4.024 18 C -0.073 4.073 19 N -0.119 5.119 20 N -0.038 5.038 21 N -0.074 5.074 22 H 0.330 0.670 23 N -0.137 5.137 24 C -0.049 4.049 25 N 0.547 4.453 26 O -0.381 6.381 27 O -0.330 6.330 28 C -0.144 4.144 29 C -0.083 4.083 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.172 0.828 39 H 0.123 0.877 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.900 2.542 7.256 18.567 hybrid contribution 0.234 1.298 -0.616 1.456 sum 17.133 3.840 6.640 18.772 Atomic orbital electron populations 1.69949 1.06774 1.27920 1.47145 1.25120 0.94836 1.00297 0.92623 0.85967 0.77846 0.80676 0.78425 1.21378 1.24990 1.19670 1.21190 0.88384 0.95397 1.54137 0.89993 1.20250 0.94215 0.83218 0.85315 1.86124 1.76426 1.51690 1.23539 1.23309 0.93168 1.00823 1.00761 1.23392 0.99978 0.98678 0.87217 1.60488 1.01780 1.25226 1.30650 1.19273 0.91116 0.90114 0.93410 1.21272 0.99549 0.94470 0.99445 1.20982 0.89167 0.99062 0.96817 1.16570 0.90102 0.95293 1.00471 1.23360 0.94533 0.95523 0.93854 1.76456 0.99140 1.14267 1.21993 1.78962 1.21869 1.02117 1.00848 1.47728 1.05224 1.28034 1.26431 0.66987 1.74856 1.01677 1.14448 1.22767 1.20615 0.85182 0.99540 0.99521 1.43349 1.02182 0.98758 1.00987 1.94547 1.92525 1.53933 0.97109 1.94547 1.21494 1.51356 1.65577 1.20580 0.89523 1.02610 1.01710 1.23941 0.88784 0.94782 1.00817 0.92232 0.77605 0.89899 0.90648 0.91680 0.90007 0.82908 0.82871 0.82806 0.87696 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.75 13.96 55.43 0.77 -23.98 16 2 C 0.08 1.99 5.46 -17.82 -0.10 1.90 16 3 Si 0.94 21.50 24.91 -169.99 -4.23 17.27 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.32 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.27 -5.90 5.13 56.52 0.29 -5.61 16 7 C -0.55 -13.47 8.70 -34.44 -0.30 -13.77 16 8 H 0.08 2.19 7.98 -52.48 -0.42 1.78 16 9 C 0.21 4.14 0.68 -89.95 -0.06 4.08 16 10 O -0.57 -11.19 9.01 -35.23 -0.32 -11.51 16 11 C -0.14 -2.33 6.23 -24.60 -0.15 -2.48 16 12 C 0.03 0.47 5.44 -2.30 -0.01 0.45 16 13 N -0.47 -7.31 5.27 -167.89 -0.88 -8.19 16 14 C 0.17 2.39 5.78 -83.76 -0.48 1.91 16 15 C -0.13 -1.64 8.57 -39.43 -0.34 -1.98 16 16 C -0.04 -0.46 9.69 -39.30 -0.38 -0.85 16 17 C -0.02 -0.25 5.87 -104.87 -0.62 -0.87 16 18 C 0.21 2.84 7.67 -156.29 -1.20 1.64 16 19 N -0.24 -3.62 8.71 32.15 0.28 -3.34 16 20 N -0.04 -0.50 13.47 60.35 0.81 0.31 16 21 N -0.23 -1.93 7.90 60.35 0.48 -1.46 16 22 H 0.48 1.49 8.96 -340.37 -3.05 -1.56 16 23 N -0.29 -3.15 12.09 32.17 0.39 -2.76 16 24 C 0.04 0.53 6.36 -79.66 -0.51 0.02 16 25 N 0.02 0.33 3.83 34.10 0.13 0.46 16 26 O -0.17 -2.90 19.10 -29.46 -0.56 -3.47 16 27 O -0.10 -1.66 15.66 -29.46 -0.46 -2.12 16 28 C -0.12 -1.71 8.38 -39.43 -0.33 -2.04 16 29 C 0.04 0.73 4.88 -2.84 -0.01 0.72 16 30 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.38 6.52 9.10 45.56 0.41 6.93 16 32 H 0.08 1.39 7.99 -51.93 -0.41 0.98 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.93 6.51 -51.93 -0.34 0.59 16 35 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 36 H 0.15 1.84 6.77 -52.48 -0.36 1.48 16 37 H 0.15 1.46 7.89 -52.49 -0.41 1.04 16 38 H 0.15 2.00 6.40 -52.49 -0.34 1.66 16 39 H 0.10 1.95 7.82 -51.93 -0.41 1.54 16 40 H 0.08 1.41 3.98 -51.93 -0.21 1.20 16 LS Contribution 334.97 15.07 5.05 5.05 Total: -1.00 -31.64 334.97 -8.66 -40.30 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.62 Total: 4.73 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -4.49 Total: -11.28 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 1.98 Total: -38.96 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -1.34 Total: -17.10 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.23 Total: 17.27 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.64 -8.66 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.294 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds