Wall clock time and date at job start Sat Apr 11 2020 07:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00592 * 2 1 4 4 H 1.48501 * 109.47378 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46910 * 300.00255 * 3 2 1 6 6 H 1.48505 * 109.46904 * 60.00024 * 3 2 1 7 7 C 1.37878 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00526 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99837 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.27333 * 300.69422 * 9 7 2 11 11 C 1.54595 * 110.31207 * 62.78665 * 9 7 2 12 12 C 1.55102 * 102.84424 * 97.11731 * 11 9 7 13 13 N 1.48534 * 103.28713 * 37.30515 * 12 11 9 14 14 C 1.39692 * 110.99976 * 200.33277 * 13 12 11 15 15 C 1.38730 * 120.01814 * 53.41411 * 14 13 12 16 16 C 1.39163 * 119.80923 * 179.97438 * 15 14 13 17 17 C 1.48469 * 120.08498 * 180.02562 * 16 15 14 18 18 N 1.34041 * 126.67077 * 359.68350 * 17 16 15 19 19 N 1.28994 * 107.26824 * 179.84004 * 18 17 16 20 20 N 1.28738 * 108.93839 * 0.43411 * 19 18 17 21 21 H 0.96993 * 125.33653 * 179.74636 * 20 19 18 22 22 N 1.28873 * 109.31691 * 359.72854 * 20 19 18 23 23 C 1.39362 * 119.83143 * 0.02562 * 16 15 14 24 24 C 1.38052 * 120.03609 * 0.02562 * 23 16 15 25 25 C 1.38203 * 120.19396 * 359.69581 * 24 23 16 26 26 N 1.48026 * 119.91797 * 180.29954 * 25 24 23 27 27 O 1.21795 * 120.00286 * 5.39645 * 26 25 24 28 28 O 1.21802 * 119.99785 * 185.39565 * 26 25 24 29 29 C 1.47904 * 105.81654 * 320.84848 * 13 12 11 30 30 H 0.97009 * 119.99704 * 359.97438 * 1 2 3 31 31 H 0.96704 * 113.99760 * 59.30122 * 10 9 7 32 32 H 1.08991 * 110.72601 * 215.41719 * 11 9 7 33 33 H 1.09003 * 110.72065 * 338.70420 * 11 9 7 34 34 H 1.09007 * 110.59328 * 278.87682 * 12 11 9 35 35 H 1.08999 * 110.82968 * 155.85234 * 12 11 9 36 36 H 1.08003 * 120.09777 * 359.95411 * 15 14 13 37 37 H 1.08005 * 119.98114 * 179.97438 * 23 16 15 38 38 H 1.07995 * 119.90211 * 179.97438 * 24 23 16 39 39 H 1.09001 * 109.91698 * 265.97280 * 29 13 12 40 40 H 1.09004 * 109.91642 * 144.68267 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 0.4102 -2.5855 1.1529 11 6 0.4087 -2.6326 -1.2891 12 6 1.3147 -3.4969 -2.2045 13 7 1.9376 -4.4581 -1.2588 14 6 3.1034 -5.0070 -1.7984 15 6 4.1070 -4.1751 -2.2731 16 6 5.2668 -4.7265 -2.8093 17 6 6.3450 -3.8419 -3.3186 18 7 6.3406 -2.5016 -3.3336 19 7 7.4590 -2.1208 -3.8513 20 7 8.1498 -3.1608 -4.1650 21 1 9.0289 -3.1478 -4.5745 22 7 7.4900 -4.2219 -3.8493 23 6 5.4137 -6.1112 -2.8669 24 6 4.4103 -6.9328 -2.3935 25 6 3.2604 -6.3865 -1.8555 26 7 2.1913 -7.2731 -1.3437 27 8 2.3653 -8.4780 -1.3060 28 8 1.1375 -6.7977 -0.9602 29 6 2.2338 -3.6840 -0.0339 30 1 -0.4850 0.8401 0.0004 31 1 -0.2443 -1.8764 1.2163 32 1 -0.5319 -3.1437 -1.0844 33 1 0.2285 -1.6544 -1.7350 34 1 2.0756 -2.8804 -2.6832 35 1 0.7210 -4.0228 -2.9522 36 1 3.9884 -3.1026 -2.2271 37 1 6.3126 -6.5417 -3.2828 38 1 4.5262 -8.0055 -2.4396 39 1 3.2590 -3.3151 -0.0665 40 1 2.0900 -4.3115 0.8458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609494914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:44:52 Heat of formation + Delta-G solvation = 106.311659 kcal Electronic energy + Delta-G solvation = -30726.298253 eV Core-core repulsion = 26354.573622 eV Total energy + Delta-G solvation = -4371.724631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -45.63769 -43.11733 -41.42862 -39.52299 -37.44581 -36.76857 -35.62955 -34.86963 -34.18326 -32.68071 -32.49660 -29.92754 -29.72790 -27.84445 -26.66446 -25.84993 -24.99791 -24.21342 -22.76606 -21.94934 -21.35218 -20.41361 -20.24407 -19.43071 -19.08578 -18.38627 -18.28744 -18.19596 -17.18351 -16.80504 -16.66298 -15.98698 -15.78334 -15.43383 -15.23696 -15.01009 -14.53705 -14.48076 -14.28352 -13.67485 -13.49221 -13.40816 -13.20817 -13.00895 -12.82866 -12.57245 -12.50398 -12.46937 -12.37100 -12.29157 -12.23538 -12.18833 -12.11421 -11.99970 -11.93875 -11.17054 -10.62257 -10.40508 -10.21170 -10.13375 -9.62250 -8.22026 -6.39121 -1.41991 -0.25525 -0.12092 0.14209 0.50716 1.01411 1.26846 1.38716 1.43086 1.52799 2.17187 2.33060 2.37180 2.57142 2.91303 3.03029 3.34774 3.65540 3.69842 3.72757 3.89342 3.94131 4.07429 4.20270 4.24003 4.34003 4.43495 4.56736 4.60858 4.66939 4.82780 4.90133 5.03427 5.10064 5.18403 5.34891 5.41608 5.47334 5.51138 5.58590 5.79432 6.05265 6.17876 6.67141 6.72015 6.95584 7.32775 7.47382 8.82799 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.007904 B = 0.005137 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.719396 B = 5449.501238 C = 8634.609754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.035 3.965 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.553 4.553 8 H 0.054 0.946 9 C 0.236 3.764 10 O -0.599 6.599 11 C -0.117 4.117 12 C 0.053 3.947 13 N -0.478 5.478 14 C 0.144 3.856 15 C -0.118 4.118 16 C 0.049 3.951 17 C 0.195 3.805 18 N -0.292 5.292 19 N -0.054 5.054 20 N -0.190 5.190 21 H 0.498 0.502 22 N -0.265 5.265 23 C -0.067 4.067 24 C -0.036 4.036 25 C -0.030 4.030 26 N 0.029 4.971 27 O -0.172 6.172 28 O -0.159 6.159 29 C 0.070 3.930 30 H 0.271 0.729 31 H 0.378 0.622 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.144 0.856 37 H 0.195 0.805 38 H 0.193 0.807 39 H 0.053 0.947 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.668 -10.147 -11.994 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.166 4.166 3 Si 0.780 3.220 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.591 4.591 8 H 0.072 0.928 9 C 0.197 3.803 10 O -0.408 6.408 11 C -0.156 4.156 12 C -0.073 4.073 13 N -0.200 5.200 14 C 0.047 3.953 15 C -0.141 4.141 16 C 0.045 3.955 17 C -0.085 4.085 18 N -0.164 5.164 19 N -0.049 5.049 20 N -0.042 5.042 21 H 0.359 0.641 22 N -0.118 5.118 23 C -0.088 4.088 24 C -0.055 4.055 25 C -0.115 4.115 26 N 0.547 4.453 27 O -0.385 6.385 28 O -0.375 6.375 29 C -0.056 4.056 30 H 0.080 0.920 31 H 0.228 0.772 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.162 0.838 37 H 0.212 0.788 38 H 0.210 0.790 39 H 0.071 0.929 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.311 -9.960 -12.140 24.122 hybrid contribution 0.117 1.832 0.051 1.837 sum 18.428 -8.128 -12.089 23.491 Atomic orbital electron populations 1.69739 1.06730 1.28208 1.50042 1.25598 0.95704 1.01951 0.93319 0.85571 0.78940 0.79738 0.77763 1.19765 1.20225 1.20580 1.21893 0.93195 0.91639 1.52358 0.92798 1.19540 0.86932 0.91008 0.82854 1.86121 1.52084 1.54531 1.48048 1.22849 0.97052 0.98219 0.97434 1.23295 0.97412 0.92069 0.94498 1.62733 1.19555 1.32654 1.05069 1.18868 0.91210 0.91135 0.94076 1.21780 0.92298 1.01601 0.98438 1.17505 0.89264 0.92319 0.96457 1.23453 0.93707 0.89486 1.01848 1.76251 1.12538 1.10952 1.16653 1.78988 0.99172 1.14874 1.11819 1.47872 1.19053 0.99623 1.37671 0.64148 1.74834 1.05665 1.14256 1.17047 1.21462 1.00058 0.89463 0.97770 1.21271 0.88144 1.03913 0.92160 1.21493 0.91699 0.88593 1.09708 1.43676 1.02209 1.01045 0.98415 1.94423 1.86732 0.97956 1.59411 1.94728 1.14177 1.79240 1.49308 1.22754 0.97986 0.93712 0.91108 0.91969 0.77190 0.93678 0.91296 0.92611 0.89462 0.83829 0.78802 0.78968 0.92927 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.00 10.38 21.45 0.22 -47.78 16 2 C 0.04 1.83 5.01 84.66 0.42 2.26 16 3 Si 0.95 41.99 29.54 68.60 2.03 44.01 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 7 C -0.55 -29.20 8.23 25.60 0.21 -28.98 16 8 H 0.05 2.85 7.34 -2.91 -0.02 2.83 16 9 C 0.24 11.90 0.99 -10.66 -0.01 11.89 16 10 O -0.60 -32.66 12.93 -148.98 -1.93 -34.58 16 11 C -0.12 -5.47 5.89 31.86 0.19 -5.29 16 12 C 0.05 2.06 6.39 86.71 0.55 2.62 16 13 N -0.48 -18.84 3.16 -682.55 -2.15 -20.99 16 14 C 0.14 4.66 4.82 38.18 0.18 4.85 16 15 C -0.12 -3.42 7.62 22.61 0.17 -3.25 16 16 C 0.05 1.07 5.87 -20.06 -0.12 0.95 16 17 C 0.19 4.23 7.93 137.39 1.09 5.32 16 18 N -0.29 -7.72 12.23 -52.18 -0.64 -8.36 16 19 N -0.05 -1.09 13.47 37.02 0.50 -0.60 16 20 N -0.19 -2.19 7.90 37.02 0.29 -1.90 16 21 H 0.50 0.28 8.96 -347.54 -3.12 -2.84 16 22 N -0.26 -4.01 12.08 -52.13 -0.63 -4.64 16 23 C -0.07 -1.02 9.69 22.50 0.22 -0.80 16 24 C -0.04 -0.65 9.54 22.22 0.21 -0.44 16 25 C -0.03 -0.85 6.86 36.54 0.25 -0.60 16 26 N 0.03 0.99 4.45 -46.06 -0.21 0.78 16 27 O -0.17 -5.42 18.45 18.89 0.35 -5.07 16 28 O -0.16 -6.46 17.10 18.88 0.32 -6.14 16 29 C 0.07 3.13 6.01 86.44 0.52 3.65 16 30 H 0.27 13.60 8.31 -92.70 -0.77 12.83 16 31 H 0.38 20.79 7.18 -74.05 -0.53 20.26 16 32 H 0.04 2.17 8.08 -2.39 -0.02 2.15 16 33 H 0.07 3.46 6.64 -2.39 -0.02 3.45 16 34 H 0.06 2.11 6.39 -2.38 -0.02 2.09 16 35 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.14 4.77 6.83 -2.91 -0.02 4.75 16 37 H 0.19 1.46 7.88 -2.91 -0.02 1.43 16 38 H 0.19 2.31 7.61 -2.91 -0.02 2.29 16 39 H 0.05 2.29 6.21 -2.39 -0.01 2.27 16 40 H 0.06 2.89 7.96 -2.38 -0.02 2.87 16 Total: -1.00 -69.12 345.41 -0.43 -69.55 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -2.49 Total: 23.54 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 3.89 Total: -7.83 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -2.61 Total: -83.48 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -1.25 Total: -45.79 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -69.12 -0.43 -69.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.866 kcal (2) G-P(sol) polarization free energy of solvation -69.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds