Wall clock time and date at job start Sat Apr 11 2020 07:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42903 * 110.28700 * 60.39156 * 9 7 2 11 11 C 1.54258 * 110.31938 * 298.26612 * 9 7 2 12 12 C 1.54378 * 105.05931 * 241.10222 * 11 9 7 13 13 N 1.48566 * 104.59376 * 23.85692 * 12 11 9 14 14 C 1.39691 * 110.99747 * 200.96100 * 13 12 11 15 15 C 1.38733 * 120.01955 * 60.12444 * 14 13 12 16 16 C 1.39167 * 119.80252 * 179.97438 * 15 14 13 17 17 C 1.48470 * 120.07793 * 180.02562 * 16 15 14 18 18 N 1.34048 * 126.67420 * 0.02562 * 17 16 15 19 19 N 1.28985 * 107.26710 * 179.97438 * 18 17 16 20 20 N 1.28727 * 108.94704 * 359.97438 * 19 18 17 21 21 H 0.96994 * 125.34727 * 179.97438 * 20 19 18 22 22 N 1.28875 * 109.31330 * 359.75503 * 20 19 18 23 23 C 1.39356 * 119.83947 * 0.02562 * 16 15 14 24 24 C 1.38053 * 120.03374 * 0.02562 * 23 16 15 25 25 C 1.38205 * 120.19566 * 359.70710 * 24 23 16 26 26 N 1.48021 * 119.92205 * 180.29582 * 25 24 23 27 27 O 1.21801 * 119.99753 * 0.25265 * 26 25 24 28 28 O 1.21802 * 120.00448 * 180.24932 * 26 25 24 29 29 C 1.48558 * 104.21776 * 320.51441 * 13 12 11 30 30 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 31 31 H 0.96699 * 113.99905 * 300.70082 * 10 9 7 32 32 H 1.08995 * 110.32827 * 359.97438 * 11 9 7 33 33 H 1.09010 * 110.32008 * 122.20901 * 11 9 7 34 34 H 1.09003 * 110.41226 * 142.63404 * 12 11 9 35 35 H 1.09000 * 110.41677 * 265.07986 * 12 11 9 36 36 H 1.07999 * 120.10175 * 359.95411 * 15 14 13 37 37 H 1.08006 * 119.97993 * 180.02562 * 23 16 15 38 38 H 1.07998 * 119.90007 * 179.97438 * 24 23 16 39 39 H 1.08997 * 110.41640 * 280.70022 * 29 13 12 40 40 H 1.09005 * 110.40400 * 158.26475 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4347 -2.5948 -1.1744 11 6 0.3843 -2.6231 1.2648 12 6 0.9175 -3.8752 1.9936 13 7 2.3133 -4.0255 1.5072 14 6 2.7693 -5.3331 1.6907 15 6 2.1120 -6.3898 1.0776 16 6 2.5705 -7.6906 1.2631 17 6 1.8721 -8.8261 0.6094 18 7 0.7935 -8.7532 -0.1833 19 7 0.5014 -9.9566 -0.5439 20 7 1.3472 -10.7690 -0.0131 21 1 1.3477 -11.7322 -0.1273 22 7 2.1959 -10.1012 0.6902 23 6 3.6867 -7.9249 2.0639 24 6 4.3350 -6.8684 2.6716 25 6 3.8842 -5.5755 2.4840 26 7 4.5879 -4.4466 3.1333 27 8 5.5657 -4.6574 3.8282 28 8 4.1892 -3.3070 2.9726 29 6 2.2348 -3.6868 0.0629 30 1 -0.4850 0.8401 -0.0004 31 1 -0.2183 -1.8863 -1.2572 32 1 0.5044 -1.7403 1.8926 33 1 -0.6635 -2.7587 0.9964 34 1 0.9055 -3.7211 3.0726 35 1 0.3259 -4.7511 1.7272 36 1 1.2469 -6.2036 0.4585 37 1 4.0447 -8.9335 2.2090 38 1 5.1996 -7.0524 3.2921 39 1 1.8493 -4.5330 -0.5057 40 1 3.2147 -3.3907 -0.3118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609494916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:02 Heat of formation + Delta-G solvation = 130.014008 kcal Electronic energy + Delta-G solvation = -30565.226170 eV Core-core repulsion = 26194.529350 eV Total energy + Delta-G solvation = -4370.696820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.88733 -41.79781 -40.14459 -38.09835 -36.02063 -35.19400 -34.76953 -33.95903 -32.06729 -31.53427 -31.33035 -28.43518 -28.01898 -26.60550 -25.19889 -24.70939 -23.92260 -23.00034 -21.65458 -20.50823 -19.67484 -19.53141 -19.01914 -18.09937 -17.56075 -17.16195 -17.04364 -16.96822 -15.78277 -15.53411 -14.82596 -14.72195 -14.38540 -14.09793 -13.99400 -13.74454 -13.50960 -13.06709 -12.73997 -12.47639 -12.07040 -11.99935 -11.83356 -11.74202 -11.48658 -11.35790 -11.21560 -11.06448 -11.03401 -10.69683 -10.64283 -10.56396 -10.52715 -10.35645 -9.96060 -9.46653 -9.28276 -8.98660 -8.52458 -8.24130 -8.13668 -6.12395 -4.17020 -0.31817 0.68295 0.73403 1.25306 1.73016 1.81221 1.99334 3.14377 3.15494 3.33472 3.40380 3.47826 3.68674 3.85833 4.34894 4.42839 4.56660 4.70296 4.75016 4.85968 5.02982 5.16198 5.27047 5.48465 5.51518 5.66312 5.70817 5.77611 5.93210 5.93719 5.96016 6.10704 6.16908 6.37193 6.74441 6.75536 6.86718 7.06681 7.37975 7.51497 7.61644 7.71610 7.89587 8.13641 8.20780 8.85855 9.42644 9.54125 10.95216 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.012362 B = 0.003675 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.379534 B = 7616.435291 C = 9467.176955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.899 3.101 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.254 3.746 10 O -0.594 6.594 11 C -0.118 4.118 12 C 0.037 3.963 13 N -0.459 5.459 14 C 0.166 3.834 15 C -0.114 4.114 16 C 0.038 3.962 17 C 0.211 3.789 18 N -0.254 5.254 19 N -0.042 5.042 20 N -0.225 5.225 21 H 0.477 0.523 22 N -0.285 5.285 23 C -0.096 4.096 24 C -0.056 4.056 25 C -0.014 4.014 26 N 0.021 4.979 27 O -0.212 6.212 28 O -0.067 6.067 29 C 0.056 3.944 30 H 0.266 0.734 31 H 0.385 0.615 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.042 0.958 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 -21.511 3.257 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.214 3.786 10 O -0.404 6.404 11 C -0.157 4.157 12 C -0.088 4.088 13 N -0.181 5.181 14 C 0.068 3.932 15 C -0.137 4.137 16 C 0.034 3.966 17 C -0.069 4.069 18 N -0.127 5.127 19 N -0.038 5.038 20 N -0.071 5.071 21 H 0.332 0.668 22 N -0.137 5.137 23 C -0.117 4.117 24 C -0.075 4.075 25 C -0.099 4.099 26 N 0.544 4.456 27 O -0.411 6.411 28 O -0.304 6.304 29 C -0.069 4.069 30 H 0.075 0.925 31 H 0.237 0.763 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.177 0.823 37 H 0.170 0.830 38 H 0.178 0.822 39 H 0.060 0.940 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.730 -22.484 2.808 22.823 hybrid contribution 0.034 0.593 0.085 0.600 sum 2.764 -21.891 2.892 22.254 Atomic orbital electron populations 1.69681 1.05903 1.27357 1.51341 1.24976 0.94970 0.99448 0.94024 0.86463 0.80202 0.82646 0.78012 1.20797 1.21277 1.19407 1.21619 0.93742 0.90035 1.49986 0.91654 1.19168 0.86172 0.91211 0.82008 1.86067 1.53293 1.54725 1.46271 1.22893 0.98434 0.95092 0.99259 1.23372 0.85392 0.99529 1.00462 1.63505 1.23437 1.13980 1.17220 1.19013 0.91097 0.91954 0.91101 1.21971 1.01344 0.90346 1.00057 1.17393 0.94362 0.88703 0.96176 1.23519 0.94221 0.90316 0.98851 1.76210 1.12636 1.11910 1.11950 1.79004 1.14059 0.94788 1.15913 1.47771 1.16423 1.13268 1.29640 0.66821 1.74895 1.16795 1.05459 1.16546 1.21048 0.94305 0.99872 0.96441 1.20863 0.99839 0.89005 0.97786 1.21342 0.97597 0.87430 1.03538 1.43389 1.00133 1.02534 0.99549 1.94480 1.17614 1.91180 1.37782 1.94759 1.67728 1.05189 1.62703 1.23235 1.01570 0.98257 0.83856 0.92467 0.76350 0.89860 0.92427 0.90759 0.94320 0.82289 0.82959 0.82233 0.93982 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.77 10.80 55.43 0.60 -23.17 16 2 C 0.07 1.76 5.02 -17.82 -0.09 1.67 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.69 8.09 -34.44 -0.28 -13.97 16 8 H 0.07 1.78 7.53 -52.49 -0.40 1.38 16 9 C 0.25 6.10 1.06 -90.39 -0.10 6.00 16 10 O -0.59 -14.87 12.95 -35.23 -0.46 -15.33 16 11 C -0.12 -2.62 5.56 -25.35 -0.14 -2.76 16 12 C 0.04 0.70 6.36 -2.18 -0.01 0.68 16 13 N -0.46 -8.73 3.25 -166.74 -0.54 -9.27 16 14 C 0.17 2.64 4.89 -83.82 -0.41 2.23 16 15 C -0.11 -1.58 7.70 -39.05 -0.30 -1.88 16 16 C 0.04 0.44 5.87 -104.92 -0.62 -0.18 16 17 C 0.21 2.38 7.94 -156.30 -1.24 1.14 16 18 N -0.25 -3.20 12.23 32.16 0.39 -2.80 16 19 N -0.04 -0.43 13.47 60.35 0.81 0.39 16 20 N -0.22 -1.49 7.90 60.35 0.48 -1.01 16 21 H 0.48 0.70 8.96 -340.38 -3.05 -2.35 16 22 N -0.28 -2.52 12.08 32.17 0.39 -2.13 16 23 C -0.10 -0.92 9.69 -39.23 -0.38 -1.30 16 24 C -0.06 -0.62 9.54 -39.66 -0.38 -1.00 16 25 C -0.01 -0.21 6.87 -79.69 -0.55 -0.76 16 26 N 0.02 0.37 4.45 34.09 0.15 0.52 16 27 O -0.21 -3.69 18.44 -29.46 -0.54 -4.23 16 28 O -0.07 -1.38 17.08 -29.46 -0.50 -1.89 16 29 C 0.06 1.17 5.62 -2.19 -0.01 1.16 16 30 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.39 9.82 7.28 45.56 0.33 10.15 16 32 H 0.08 2.05 7.25 -51.93 -0.38 1.67 16 33 H 0.06 1.27 7.98 -51.92 -0.41 0.86 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.04 0.65 6.78 -51.93 -0.35 0.30 16 36 H 0.16 2.32 6.56 -52.49 -0.34 1.97 16 37 H 0.15 1.05 7.88 -52.48 -0.41 0.64 16 38 H 0.16 1.44 7.60 -52.49 -0.40 1.04 16 39 H 0.04 0.83 6.41 -51.93 -0.33 0.50 16 40 H 0.08 1.82 7.67 -51.93 -0.40 1.42 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -30.96 346.08 -9.23 -40.19 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.70 Total: 6.46 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -4.50 Total: -8.97 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 2.28 Total: -37.48 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -1.50 Total: -21.44 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.96 -9.23 -40.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609494916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.208 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds