Wall clock time and date at job start Sat Apr 11 2020 07:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46870 * 2 1 4 4 C 1.50697 * 109.47575 * 239.99393 * 2 1 3 5 5 H 1.08002 * 120.00132 * 240.00364 * 4 2 1 6 6 C 1.37874 * 119.99568 * 60.00102 * 4 2 1 7 7 N 1.31512 * 120.00320 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99945 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47343 * 59.99264 * 8 6 4 10 10 H 1.48502 * 109.47353 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46814 * 299.99710 * 8 6 4 12 12 N 1.46903 * 109.46770 * 119.99166 * 2 1 3 13 13 C 1.46906 * 110.99760 * 58.95982 * 12 2 1 14 14 C 1.38245 * 111.00491 * 295.00224 * 12 2 1 15 15 N 1.31534 * 126.34500 * 0.02562 * 14 12 2 16 16 N 1.28509 * 110.11254 * 179.97438 * 15 14 12 17 17 C 1.31493 * 109.88893 * 0.02562 * 16 15 14 18 18 C 1.47149 * 126.49149 * 179.97438 * 17 16 15 19 19 N 1.31492 * 126.40303 * 180.02562 * 18 17 16 20 20 N 1.28656 * 109.22039 * 179.97438 * 19 18 17 21 21 C 1.30397 * 109.57121 * 359.97438 * 20 19 18 22 22 C 1.50699 * 126.16606 * 180.25949 * 21 20 19 23 23 F 1.39902 * 109.46733 * 4.69380 * 22 21 20 24 24 F 1.39902 * 109.46786 * 124.68879 * 22 21 20 25 25 F 1.39892 * 109.47391 * 244.69172 * 22 21 20 26 26 O 1.34465 * 107.66861 * 359.97438 * 21 20 19 27 27 N 1.36360 * 126.34659 * 180.31581 * 14 12 2 28 28 C 1.46500 * 127.16136 * 359.97438 * 27 14 12 29 29 H 1.09004 * 109.47329 * 300.00779 * 1 2 3 30 30 H 1.08997 * 109.46971 * 60.00496 * 1 2 3 31 31 H 1.08995 * 109.47244 * 180.02562 * 1 2 3 32 32 H 0.97008 * 119.99880 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46606 * 296.04144 * 13 12 2 34 34 H 1.08991 * 109.47310 * 56.04234 * 13 12 2 35 35 H 1.09004 * 109.46681 * 176.04156 * 13 12 2 36 36 H 1.08995 * 109.47153 * 270.19792 * 28 27 14 37 37 H 1.09000 * 109.46579 * 30.19751 * 28 27 14 38 38 H 1.08996 * 109.47008 * 150.19412 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2395 -2.4826 7 7 0.9428 0.8294 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 1.8262 -2.5205 -4.0075 10 1 1.8272 -0.4202 -5.2204 11 1 3.8066 -1.1211 -4.0079 12 7 2.0196 -0.6923 1.1996 13 6 1.5282 -2.0760 1.2462 14 6 1.6704 -0.0037 2.3464 15 7 0.9922 1.1218 2.4037 16 7 0.8433 1.4861 3.6271 17 6 1.4185 0.6149 4.4265 18 6 1.4688 0.6755 5.8959 19 7 2.0450 -0.1966 6.6936 20 7 1.8902 0.1791 7.9143 21 6 1.2164 1.2951 7.9457 22 6 0.8297 2.0659 9.1815 23 9 1.3970 1.4582 10.3067 24 9 1.2966 3.3805 9.0763 25 9 -0.5634 2.0747 9.3088 26 8 0.9343 1.6374 6.6763 27 7 1.9701 -0.3626 3.6273 28 6 2.7190 -1.5438 4.0633 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.7089 1.1610 -3.4845 33 1 0.4418 -2.0729 1.3349 34 1 1.8167 -2.5950 0.3321 35 1 1.9617 -2.5867 2.1061 36 1 2.0294 -2.3726 4.2230 37 1 3.4444 -1.8172 3.2970 38 1 3.2404 -1.3203 4.9940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650268974.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:40 Heat of formation + Delta-G solvation = 18.003662 kcal Electronic energy + Delta-G solvation = -30312.953758 eV Core-core repulsion = 25395.543065 eV Total energy + Delta-G solvation = -4917.410693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.93481 -48.44709 -48.43621 -44.96414 -42.95900 -37.74973 -37.04148 -35.20812 -33.43294 -32.72769 -30.23658 -28.97329 -28.14158 -27.57187 -25.74326 -25.37438 -24.54825 -23.68825 -22.14688 -21.60053 -19.85669 -19.75321 -19.46072 -19.10815 -17.94885 -17.72935 -16.98662 -16.47795 -16.40356 -15.84996 -15.53902 -15.21683 -15.15147 -14.80104 -14.74715 -14.52319 -14.51442 -14.16294 -13.82154 -13.66063 -13.42739 -13.24862 -13.16831 -12.67767 -12.54352 -12.03440 -11.85168 -11.68999 -11.41780 -11.31868 -11.05236 -10.92128 -10.80867 -10.56033 -10.32177 -10.16647 -10.11973 -9.39646 -9.10704 -8.55448 -7.78587 -6.17867 -4.26679 -0.16427 0.57472 1.13160 1.65193 2.03261 2.38608 2.62915 2.87186 3.03966 3.21949 3.28189 3.28823 3.46808 3.48718 4.07719 4.22451 4.27962 4.34781 4.42648 4.61247 5.01220 5.07488 5.14472 5.27982 5.38967 5.61907 5.76048 5.79728 6.14486 6.32449 6.62293 6.81380 6.96103 7.09053 7.30719 7.31870 7.54616 7.74078 8.07433 8.16980 8.60779 8.77664 9.38820 10.88395 Molecular weight = 346.11amu Principal moments of inertia in cm(-1) A = 0.032151 B = 0.002273 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.683554 B =12317.938026 C =12831.468496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.225 3.775 3 H 0.060 0.940 4 C -0.521 4.521 5 H 0.066 0.934 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.444 5.444 13 C 0.025 3.975 14 C 0.428 3.572 15 N -0.295 5.295 16 N -0.201 5.201 17 C 0.166 3.834 18 C 0.325 3.675 19 N -0.272 5.272 20 N -0.197 5.197 21 C 0.056 3.944 22 C 0.594 3.406 23 F -0.136 7.136 24 F -0.150 7.150 25 F -0.150 7.150 26 O -0.171 6.171 27 N -0.463 5.463 28 C 0.071 3.929 29 H 0.036 0.964 30 H 0.096 0.904 31 H 0.025 0.975 32 H 0.265 0.735 33 H 0.042 0.958 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 -2.537 20.773 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.122 3.878 3 H 0.078 0.922 4 C -0.559 4.559 5 H 0.084 0.916 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.166 5.166 13 C -0.121 4.121 14 C 0.075 3.925 15 N -0.146 5.146 16 N -0.051 5.051 17 C -0.095 4.095 18 C 0.117 3.883 19 N -0.125 5.125 20 N -0.048 5.048 21 C -0.157 4.157 22 C 0.537 3.463 23 F -0.117 7.117 24 F -0.131 7.131 25 F -0.131 7.131 26 O -0.046 6.046 27 N -0.161 5.161 28 C -0.071 4.071 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.996 -2.281 20.538 20.688 hybrid contribution -0.287 -0.427 -0.655 0.833 sum 0.709 -2.708 19.883 20.079 Atomic orbital electron populations 1.22454 0.98621 0.99379 1.02889 1.19550 0.91572 0.94997 0.81717 0.92245 1.20927 1.32465 1.13317 0.89233 0.91633 1.24888 0.94823 0.94994 0.99013 1.69891 1.35604 1.22342 1.24084 0.86492 0.79229 0.79516 0.81772 1.20193 1.21160 1.20109 1.59214 1.54449 1.03841 0.99144 1.22566 0.98821 0.86928 1.03822 1.23462 0.91797 0.93676 0.83612 1.75189 1.17914 1.12279 1.09230 1.74569 1.13961 1.19681 0.96847 1.19111 1.10260 0.94296 0.85827 1.23086 0.91121 0.83145 0.90917 1.75049 1.20350 1.22602 0.94476 1.74440 1.10044 1.06850 1.13471 1.27301 1.05292 0.97896 0.85251 1.15809 0.75572 0.76342 0.78602 1.93342 1.84656 1.83007 1.50668 1.93346 1.88303 1.35555 1.95870 1.93342 1.27784 1.96125 1.95820 1.84950 1.59963 1.44234 1.15411 1.45818 1.43690 1.21220 1.05331 1.22377 0.96827 0.84697 1.03208 0.94479 0.88577 0.95546 0.92455 0.93933 0.87811 0.92672 0.89782 0.87941 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.26 37.16 0.31 -3.74 16 2 C 0.22 5.29 2.03 -68.87 -0.14 5.15 16 3 H 0.06 1.60 7.94 -51.93 -0.41 1.19 16 4 C -0.52 -12.94 7.88 -34.44 -0.27 -13.21 16 5 H 0.07 1.57 6.77 -52.49 -0.36 1.21 16 6 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.88 -23.80 11.32 55.43 0.63 -23.17 16 8 Si 0.90 19.84 29.54 -169.99 -5.02 14.82 16 9 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 N -0.44 -8.64 4.79 -176.13 -0.84 -9.49 16 13 C 0.03 0.40 8.60 60.07 0.52 0.92 16 14 C 0.43 8.04 6.74 -319.09 -2.15 5.89 16 15 N -0.30 -6.17 9.28 30.28 0.28 -5.89 16 16 N -0.20 -3.85 12.24 32.50 0.40 -3.45 16 17 C 0.17 2.70 7.98 -153.69 -1.23 1.47 16 18 C 0.32 4.58 8.25 -14.08 -0.12 4.46 16 19 N -0.27 -3.57 10.52 31.96 0.34 -3.23 16 20 N -0.20 -2.44 12.00 32.59 0.39 -2.05 16 21 C 0.06 0.63 7.75 -12.89 -0.10 0.53 16 22 C 0.59 5.23 3.57 36.00 0.13 5.36 16 23 F -0.14 -1.13 17.15 2.25 0.04 -1.09 16 24 F -0.15 -1.31 17.30 2.25 0.04 -1.27 16 25 F -0.15 -1.30 17.30 2.25 0.04 -1.26 16 26 O -0.17 -2.26 10.90 3.58 0.04 -2.22 16 27 N -0.46 -7.10 3.23 -122.24 -0.40 -7.50 16 28 C 0.07 0.76 9.12 59.85 0.55 1.31 16 29 H 0.04 0.84 5.87 -51.93 -0.30 0.53 16 30 H 0.10 2.48 6.07 -51.93 -0.32 2.17 16 31 H 0.03 0.57 6.47 -51.93 -0.34 0.23 16 32 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 33 H 0.04 0.70 6.51 -51.93 -0.34 0.36 16 34 H 0.10 1.72 6.41 -51.93 -0.33 1.38 16 35 H 0.05 0.68 5.40 -51.93 -0.28 0.40 16 36 H 0.08 0.75 7.83 -51.93 -0.41 0.34 16 37 H 0.10 1.02 7.59 -51.93 -0.39 0.63 16 38 H 0.10 1.01 6.69 -51.93 -0.35 0.66 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -27.92 334.24 -4.59 -32.51 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -2.96 Total: -1.49 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -2.60 Total: 9.75 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.79 Total: -54.79 kcal Atomic # 8 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.12 Total: -3.62 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.92 -4.59 -32.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650268974.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.517 kcal (2) G-P(sol) polarization free energy of solvation -27.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds