Wall clock time and date at job start Sat Apr 11 2020 07:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86807 * 119.99816 * 2 1 4 4 H 1.48499 * 109.46661 * 272.68883 * 3 2 1 5 5 H 1.48499 * 109.46802 * 32.68727 * 3 2 1 6 6 H 1.48493 * 109.47084 * 152.68738 * 3 2 1 7 7 C 1.40029 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00219 * 348.31577 * 7 2 1 9 9 C 1.41542 * 119.99933 * 168.30852 * 7 2 1 10 10 C 1.41161 * 120.99674 * 146.63489 * 9 7 2 11 11 C 1.36598 * 119.12605 * 180.02562 * 10 9 7 12 12 N 1.32065 * 121.25890 * 0.02562 * 11 10 9 13 13 C 1.32492 * 122.23119 * 359.65426 * 12 11 10 14 14 N 1.39454 * 119.64727 * 180.31737 * 13 12 11 15 15 C 1.34773 * 120.00224 * 6.15152 * 14 13 12 16 16 O 1.21577 * 120.00088 * 4.81540 * 15 14 13 17 17 N 1.34784 * 120.00112 * 184.82373 * 15 14 13 18 18 C 1.46501 * 119.99925 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.46703 * 179.97438 * 18 17 15 20 20 N 1.46501 * 109.46703 * 179.97438 * 19 18 17 21 21 C 1.34943 * 126.03828 * 125.00610 * 20 19 18 22 22 C 1.35318 * 107.75156 * 179.97438 * 21 20 19 23 23 N 1.48016 * 126.04261 * 179.97438 * 22 21 20 24 24 O 1.21799 * 120.00319 * 359.97438 * 23 22 21 25 25 O 1.21800 * 119.99815 * 179.97438 * 23 22 21 26 26 C 1.39875 * 107.91424 * 359.97438 * 22 21 20 27 27 N 1.30837 * 108.20433 * 359.73579 * 26 22 21 28 28 C 1.38644 * 120.70203 * 0.63966 * 13 12 11 29 29 H 0.96995 * 119.99798 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43763 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.36777 * 179.97438 * 11 10 9 32 32 H 0.97005 * 120.00072 * 186.14473 * 14 13 12 33 33 H 0.97001 * 119.99627 * 359.97438 * 17 15 14 34 34 H 1.08998 * 109.47247 * 299.99628 * 18 17 15 35 35 H 1.09002 * 109.47100 * 59.99687 * 18 17 15 36 36 H 1.08998 * 109.47448 * 300.00096 * 19 18 17 37 37 H 1.09002 * 109.47115 * 60.00288 * 19 18 17 38 38 H 1.08001 * 126.12360 * 359.96884 * 21 20 19 39 39 H 1.07999 * 125.89668 * 179.97438 * 26 22 21 40 40 H 1.07996 * 120.66466 * 179.68039 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4320 2.0793 -1.3986 5 1 1.4684 2.6356 0.7561 6 1 3.5662 1.4246 0.6424 7 6 2.0077 -1.2127 0.0005 8 1 1.4845 -2.1383 0.1904 9 6 3.4011 -1.2254 -0.2478 10 6 4.2426 -2.1696 0.3791 11 6 5.5821 -2.1470 0.1121 12 7 6.1005 -1.2606 -0.7184 13 6 5.3583 -0.3556 -1.3394 14 7 5.9614 0.5511 -2.2106 15 6 7.2689 0.4271 -2.5133 16 8 7.9016 -0.5242 -2.0975 17 7 7.8751 1.3577 -3.2769 18 6 9.2964 1.2232 -3.6054 19 6 9.7321 2.4026 -4.4772 20 7 11.1536 2.2684 -4.8053 21 6 11.6852 2.2641 -6.0456 22 6 13.0248 2.1203 -5.9198 23 7 14.0027 2.0639 -7.0295 24 8 13.6207 2.1496 -8.1828 25 8 15.1895 1.9319 -6.7893 26 6 13.3221 2.0344 -4.5557 27 7 12.2019 2.1291 -3.8864 28 6 3.9895 -0.2961 -1.1273 29 1 -0.4849 0.8400 0.0004 30 1 3.8330 -2.8996 1.0614 31 1 6.2296 -2.8673 0.5899 32 1 5.4399 1.2709 -2.5989 33 1 7.3702 2.1165 -3.6089 34 1 9.8825 1.2141 -2.6865 35 1 9.4573 0.2916 -4.1481 36 1 9.1460 2.4113 -5.3962 37 1 9.5712 3.3343 -3.9349 38 1 11.1392 2.3584 -6.9726 39 1 14.3068 1.9148 -4.1285 40 1 3.3859 0.4451 -1.6299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672185149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:46 Heat of formation + Delta-G solvation = 98.914500 kcal Electronic energy + Delta-G solvation = -27933.201976 eV Core-core repulsion = 23561.156580 eV Total energy + Delta-G solvation = -4372.045396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.87599 -41.77337 -40.23175 -38.52521 -36.80353 -36.21636 -34.50895 -33.94100 -33.62240 -31.84599 -31.37794 -30.01355 -28.62094 -26.35408 -26.06053 -24.46503 -22.45495 -22.17691 -22.05529 -21.75059 -20.38019 -19.56149 -18.80403 -18.48458 -17.93056 -17.85949 -17.22697 -16.82067 -16.23351 -15.76212 -15.54709 -15.34819 -14.77883 -14.75223 -14.50702 -14.28804 -14.05087 -13.88269 -13.19194 -13.06625 -12.97153 -12.92040 -12.46836 -12.06947 -11.84645 -11.68936 -11.43152 -11.40287 -11.08544 -10.93034 -10.76778 -10.65636 -10.20295 -10.13435 -10.08624 -9.87710 -9.47604 -9.31140 -8.28195 -8.03249 -7.38492 -7.09976 -4.81100 -0.16210 0.71025 0.85737 1.57802 1.76947 2.27590 2.53518 2.58261 2.90859 3.04203 3.15555 3.39355 3.48527 3.66330 3.80741 3.88268 3.96440 4.13746 4.31165 4.36827 4.42944 4.51443 5.11648 5.20850 5.29218 5.34703 5.57100 5.63622 6.03852 6.10769 6.12643 6.23278 6.31933 6.40710 6.45932 6.76149 6.90508 7.04860 7.17573 7.35945 7.55986 7.79942 7.98003 8.14648 8.34913 8.58113 8.74893 9.34682 9.91840 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.026363 B = 0.001737 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.825640 B =16113.613906 C =16689.624809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.084 3.916 3 Si 0.916 3.084 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.245 1.245 7 C -0.440 4.440 8 H 0.096 0.904 9 C 0.130 3.870 10 C -0.267 4.267 11 C 0.129 3.871 12 N -0.553 5.553 13 C 0.383 3.617 14 N -0.670 5.670 15 C 0.697 3.303 16 O -0.522 6.522 17 N -0.754 5.754 18 C 0.131 3.869 19 C 0.117 3.883 20 N -0.343 5.343 21 C 0.158 3.842 22 C -0.195 4.195 23 N 0.070 4.930 24 O -0.175 6.175 25 O -0.162 6.162 26 C 0.116 3.884 27 N -0.259 5.259 28 C -0.317 4.317 29 H 0.287 0.713 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.405 0.595 33 H 0.394 0.606 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.207 0.793 39 H 0.212 0.788 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.591 10.536 -11.317 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.198 1.198 5 H -0.217 1.217 6 H -0.169 1.169 7 C -0.471 4.471 8 H 0.114 0.886 9 C 0.121 3.879 10 C -0.290 4.290 11 C -0.023 4.023 12 N -0.273 5.273 13 C 0.154 3.846 14 N -0.318 5.318 15 C 0.396 3.604 16 O -0.392 6.392 17 N -0.414 5.414 18 C 0.005 3.995 19 C -0.003 4.003 20 N -0.122 5.122 21 C 0.004 3.996 22 C -0.293 4.293 23 N 0.586 4.414 24 O -0.386 6.386 25 O -0.377 6.377 26 C -0.074 4.074 27 N -0.078 5.078 28 C -0.342 4.342 29 H 0.098 0.902 30 H 0.130 0.870 31 H 0.148 0.852 32 H 0.239 0.761 33 H 0.228 0.772 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.224 0.776 39 H 0.229 0.771 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 16.698 9.756 -9.324 21.470 hybrid contribution -0.736 1.548 -1.357 2.186 sum 15.962 11.304 -10.681 22.286 Atomic orbital electron populations 1.69609 1.07996 1.30435 1.34903 1.26159 0.94827 1.01686 0.90866 0.86230 0.81051 0.79584 0.78817 1.19769 1.21750 1.16880 1.19492 0.90598 0.95799 1.41179 0.88573 1.17714 0.93530 0.89204 0.87415 1.21750 0.94233 1.06177 1.06869 1.21636 0.92940 0.94513 0.93171 1.67256 1.38237 1.07808 1.13956 1.17735 0.87818 0.89391 0.89623 1.42575 1.08908 1.32123 1.48150 1.15918 0.81968 0.82956 0.79581 1.91057 1.63294 1.30619 1.54229 1.44905 1.10281 1.28243 1.57951 1.21196 0.81768 0.96540 0.99969 1.22208 0.73675 1.01495 1.02943 1.48659 1.07936 1.52208 1.03348 1.22411 0.92602 0.92930 0.91651 1.21072 0.89650 1.29800 0.88737 1.42448 1.01005 0.96944 1.00978 1.94558 1.84552 1.54709 1.04798 1.94566 0.99094 1.53430 1.90577 1.24070 0.99461 0.95166 0.88721 1.77883 0.93003 1.22520 1.14356 1.21220 0.92506 1.09977 1.10546 0.90217 0.87050 0.85250 0.76068 0.77241 0.89621 0.90727 0.86563 0.87345 0.77607 0.77143 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.21 13.92 55.55 0.77 -19.44 16 2 C 0.08 2.08 5.48 -17.34 -0.10 1.98 16 3 Si 0.92 19.23 24.49 -169.99 -4.16 15.07 16 4 H -0.27 -5.25 6.71 56.52 0.38 -4.87 16 5 H -0.29 -5.93 7.11 56.52 0.40 -5.52 16 6 H -0.25 -5.41 6.70 56.52 0.38 -5.03 16 7 C -0.44 -11.25 9.66 -37.65 -0.36 -11.61 16 8 H 0.10 2.57 8.06 -52.48 -0.42 2.15 16 9 C 0.13 3.15 5.09 -106.55 -0.54 2.61 16 10 C -0.27 -6.02 9.85 -39.07 -0.38 -6.40 16 11 C 0.13 2.83 11.10 -18.04 -0.20 2.63 16 12 N -0.55 -12.94 7.90 -12.76 -0.10 -13.04 16 13 C 0.38 8.33 7.40 -154.68 -1.15 7.18 16 14 N -0.67 -11.23 5.40 -15.86 -0.09 -11.32 16 15 C 0.70 11.24 8.51 -86.91 -0.74 10.50 16 16 O -0.52 -11.01 14.64 5.30 0.08 -10.94 16 17 N -0.75 -7.18 5.56 -65.22 -0.36 -7.54 16 18 C 0.13 1.07 5.87 -4.04 -0.02 1.05 16 19 C 0.12 0.44 6.62 -4.04 -0.03 0.41 16 20 N -0.34 -2.03 3.68 -61.36 -0.23 -2.25 16 21 C 0.16 0.83 11.13 -17.22 -0.19 0.64 16 22 C -0.19 -1.51 7.11 -80.38 -0.57 -2.08 16 23 N 0.07 0.70 4.45 33.75 0.15 0.85 16 24 O -0.17 -1.88 19.02 -29.46 -0.56 -2.44 16 25 O -0.16 -1.80 19.05 -29.46 -0.56 -2.36 16 26 C 0.12 0.84 11.75 -17.36 -0.20 0.63 16 27 N -0.26 -2.13 12.42 30.63 0.38 -1.75 16 28 C -0.32 -7.15 6.96 -38.45 -0.27 -7.42 16 29 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 30 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 31 H 0.13 2.45 8.06 -52.49 -0.42 2.03 16 32 H 0.40 5.14 8.72 -40.82 -0.36 4.79 16 33 H 0.39 2.17 8.49 -40.82 -0.35 1.82 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.12 0.05 8.07 -51.93 -0.42 -0.37 16 37 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.21 0.36 8.06 -52.49 -0.42 -0.07 16 39 H 0.21 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.11 2.32 4.79 -52.49 -0.25 2.07 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -35.39 360.66 -7.93 -43.32 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.93 Total: 6.26 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -4.76 Total: 0.12 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.53 Total: -54.48 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -1.04 Total: -15.73 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.16 Total: 15.07 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.39 -7.93 -43.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672185149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.239 kcal (2) G-P(sol) polarization free energy of solvation -35.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds