Wall clock time and date at job start Sat Apr 11 2020 07:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86807 * 119.99816 * 2 1 4 4 H 1.48499 * 109.46661 * 272.68883 * 3 2 1 5 5 H 1.48499 * 109.46802 * 32.68727 * 3 2 1 6 6 H 1.48493 * 109.47084 * 152.68738 * 3 2 1 7 7 C 1.40029 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00219 * 348.31577 * 7 2 1 9 9 C 1.41542 * 119.99933 * 168.30852 * 7 2 1 10 10 C 1.41161 * 120.99674 * 146.63489 * 9 7 2 11 11 C 1.36598 * 119.12605 * 180.02562 * 10 9 7 12 12 N 1.32065 * 121.25890 * 0.02562 * 11 10 9 13 13 C 1.32492 * 122.23119 * 359.65426 * 12 11 10 14 14 N 1.39454 * 119.64727 * 180.31737 * 13 12 11 15 15 C 1.34773 * 120.00224 * 6.15152 * 14 13 12 16 16 O 1.21577 * 120.00088 * 4.81540 * 15 14 13 17 17 N 1.34784 * 120.00112 * 184.82373 * 15 14 13 18 18 C 1.46501 * 119.99925 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.46703 * 179.97438 * 18 17 15 20 20 N 1.46501 * 109.46703 * 179.97438 * 19 18 17 21 21 C 1.34943 * 126.03828 * 125.00610 * 20 19 18 22 22 C 1.35318 * 107.75156 * 179.97438 * 21 20 19 23 23 N 1.48016 * 126.04261 * 179.97438 * 22 21 20 24 24 O 1.21799 * 120.00319 * 359.97438 * 23 22 21 25 25 O 1.21800 * 119.99815 * 179.97438 * 23 22 21 26 26 C 1.39875 * 107.91424 * 359.97438 * 22 21 20 27 27 N 1.30837 * 108.20433 * 359.73579 * 26 22 21 28 28 C 1.38644 * 120.70203 * 0.63966 * 13 12 11 29 29 H 0.96995 * 119.99798 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.43763 * 359.97438 * 10 9 7 31 31 H 1.08000 * 119.36777 * 179.97438 * 11 10 9 32 32 H 0.97005 * 120.00072 * 186.14473 * 14 13 12 33 33 H 0.97001 * 119.99627 * 359.97438 * 17 15 14 34 34 H 1.08998 * 109.47247 * 299.99628 * 18 17 15 35 35 H 1.09002 * 109.47100 * 59.99687 * 18 17 15 36 36 H 1.08998 * 109.47448 * 300.00096 * 19 18 17 37 37 H 1.09002 * 109.47115 * 60.00288 * 19 18 17 38 38 H 1.08001 * 126.12360 * 359.96884 * 21 20 19 39 39 H 1.07999 * 125.89668 * 179.97438 * 26 22 21 40 40 H 1.07996 * 120.66466 * 179.68039 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.4320 2.0793 -1.3986 5 1 1.4684 2.6356 0.7561 6 1 3.5662 1.4246 0.6424 7 6 2.0077 -1.2127 0.0005 8 1 1.4845 -2.1383 0.1904 9 6 3.4011 -1.2254 -0.2478 10 6 4.2426 -2.1696 0.3791 11 6 5.5821 -2.1470 0.1121 12 7 6.1005 -1.2606 -0.7184 13 6 5.3583 -0.3556 -1.3394 14 7 5.9614 0.5511 -2.2106 15 6 7.2689 0.4271 -2.5133 16 8 7.9016 -0.5242 -2.0975 17 7 7.8751 1.3577 -3.2769 18 6 9.2964 1.2232 -3.6054 19 6 9.7321 2.4026 -4.4772 20 7 11.1536 2.2684 -4.8053 21 6 11.6852 2.2641 -6.0456 22 6 13.0248 2.1203 -5.9198 23 7 14.0027 2.0639 -7.0295 24 8 13.6207 2.1496 -8.1828 25 8 15.1895 1.9319 -6.7893 26 6 13.3221 2.0344 -4.5557 27 7 12.2019 2.1291 -3.8864 28 6 3.9895 -0.2961 -1.1273 29 1 -0.4849 0.8400 0.0004 30 1 3.8330 -2.8996 1.0614 31 1 6.2296 -2.8673 0.5899 32 1 5.4399 1.2709 -2.5989 33 1 7.3702 2.1165 -3.6089 34 1 9.8825 1.2141 -2.6865 35 1 9.4573 0.2916 -4.1481 36 1 9.1460 2.4113 -5.3962 37 1 9.5712 3.3343 -3.9349 38 1 11.1392 2.3584 -6.9726 39 1 14.3068 1.9148 -4.1285 40 1 3.3859 0.4451 -1.6299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672185149.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:44 Heat of formation + Delta-G solvation = 73.125859 kcal Electronic energy + Delta-G solvation = -27934.320256 eV Core-core repulsion = 23561.156580 eV Total energy + Delta-G solvation = -4373.163675 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.122 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.45170 -42.39629 -41.60213 -40.07707 -37.54452 -37.05908 -36.07496 -35.58932 -34.42794 -33.19379 -32.38492 -31.13557 -29.76415 -27.93122 -27.00165 -25.16287 -24.19008 -23.36368 -22.68120 -22.38651 -21.79600 -20.31555 -19.73031 -19.52893 -19.41551 -18.57631 -18.12170 -17.74048 -17.32044 -17.07702 -16.61856 -16.48177 -16.04048 -15.96669 -15.62391 -15.37080 -15.15844 -14.81354 -14.75894 -14.53483 -14.40516 -13.49385 -13.46506 -13.16474 -12.76474 -12.71790 -12.64613 -12.61560 -12.52761 -12.22717 -12.06361 -11.87124 -11.62280 -11.45985 -11.19405 -11.13740 -10.64000 -10.28808 -10.10486 -9.75990 -9.01104 -8.92619 -6.73082 -0.83106 0.16502 0.34336 0.57742 0.75442 1.02659 1.19738 1.23088 1.40409 1.49027 1.56745 2.10271 2.14294 2.70252 2.85528 3.15117 3.31273 3.42313 3.50617 3.60400 3.90767 3.96719 3.99699 4.13273 4.42232 4.53029 4.59356 4.63191 4.67281 4.74948 4.77156 5.12099 5.12769 5.27094 5.29669 5.38284 5.49414 5.65996 5.81313 5.91034 6.10581 6.26959 6.51241 6.57810 6.68775 6.85046 7.45920 7.71331 8.14035 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.026363 B = 0.001737 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.825640 B =16113.613906 C =16689.624809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.049 3.951 3 Si 0.969 3.031 4 H -0.237 1.237 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.473 4.473 8 H 0.064 0.936 9 C 0.115 3.885 10 C -0.279 4.279 11 C 0.128 3.872 12 N -0.572 5.572 13 C 0.382 3.618 14 N -0.660 5.660 15 C 0.694 3.306 16 O -0.576 6.576 17 N -0.722 5.722 18 C 0.133 3.867 19 C 0.123 3.877 20 N -0.341 5.341 21 C 0.184 3.816 22 C -0.217 4.217 23 N 0.074 4.926 24 O -0.182 6.182 25 O -0.200 6.200 26 C 0.116 3.884 27 N -0.291 5.291 28 C -0.319 4.319 29 H 0.297 0.703 30 H 0.120 0.880 31 H 0.157 0.843 32 H 0.425 0.575 33 H 0.420 0.580 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.164 0.836 37 H 0.130 0.870 38 H 0.248 0.752 39 H 0.223 0.777 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.994 13.192 -13.092 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.168 4.168 3 Si 0.792 3.208 4 H -0.161 1.161 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.504 4.504 8 H 0.082 0.918 9 C 0.107 3.893 10 C -0.303 4.303 11 C -0.023 4.023 12 N -0.292 5.292 13 C 0.152 3.848 14 N -0.310 5.310 15 C 0.393 3.607 16 O -0.450 6.450 17 N -0.383 5.383 18 C 0.007 3.993 19 C 0.004 3.996 20 N -0.119 5.119 21 C 0.029 3.971 22 C -0.316 4.316 23 N 0.585 4.415 24 O -0.394 6.394 25 O -0.407 6.407 26 C -0.074 4.074 27 N -0.110 5.110 28 C -0.345 4.345 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.174 0.826 32 H 0.264 0.736 33 H 0.258 0.742 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.181 0.819 37 H 0.148 0.852 38 H 0.264 0.736 39 H 0.240 0.760 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 17.135 12.481 -11.151 23.953 hybrid contribution -0.842 0.647 -0.799 1.329 sum 16.294 13.128 -11.950 24.096 Atomic orbital electron populations 1.69636 1.09156 1.31867 1.36039 1.26879 0.95477 1.04317 0.90081 0.85443 0.78821 0.75986 0.80591 1.16144 1.20642 1.18652 1.19460 0.91560 0.95435 1.43905 0.91818 1.17898 0.93188 0.90329 0.87923 1.21927 0.94644 1.06375 1.07316 1.22069 0.93006 0.94596 0.92663 1.67408 1.38964 1.08405 1.14376 1.17940 0.87798 0.89445 0.89616 1.42416 1.09581 1.31752 1.47259 1.16113 0.81450 0.83317 0.79791 1.91029 1.64284 1.33189 1.56472 1.44506 1.10801 1.27254 1.55725 1.21179 0.80241 0.98352 0.99514 1.22412 0.72785 0.99816 1.04586 1.48817 1.08251 1.51585 1.03246 1.23020 0.91738 0.89843 0.92513 1.21230 0.90232 1.32088 0.88023 1.42692 1.01180 0.96310 1.01361 1.94527 1.84465 1.54688 1.05736 1.94563 1.00144 1.55273 1.90741 1.24357 1.00001 0.94269 0.88779 1.77867 0.93810 1.23701 1.15637 1.21302 0.93127 1.09866 1.10206 0.89192 0.86219 0.82584 0.73635 0.74227 0.92423 0.92158 0.81867 0.85244 0.73625 0.76014 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.76 13.92 21.84 0.30 -42.46 16 2 C 0.05 2.41 5.48 85.29 0.47 2.88 16 3 Si 0.97 38.17 24.49 68.60 1.68 39.85 16 4 H -0.24 -7.99 6.71 99.48 0.67 -7.32 16 5 H -0.28 -10.48 7.11 99.48 0.71 -9.78 16 6 H -0.26 -11.00 6.70 99.48 0.67 -10.34 16 7 C -0.47 -24.91 9.66 23.52 0.23 -24.68 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 9 C 0.12 5.61 5.09 -21.11 -0.11 5.51 16 10 C -0.28 -12.67 9.85 22.60 0.22 -12.45 16 11 C 0.13 5.54 11.10 84.27 0.94 6.48 16 12 N -0.57 -26.16 7.90 -194.27 -1.53 -27.69 16 13 C 0.38 15.97 7.40 132.76 0.98 16.96 16 14 N -0.66 -20.24 5.40 -322.37 -1.74 -21.98 16 15 C 0.69 20.69 8.51 179.05 1.52 22.21 16 16 O -0.58 -23.70 14.64 -3.96 -0.06 -23.76 16 17 N -0.72 -11.06 5.56 -478.53 -2.66 -13.72 16 18 C 0.13 1.79 5.87 86.38 0.51 2.30 16 19 C 0.12 0.32 6.62 86.38 0.57 0.89 16 20 N -0.34 -2.83 3.68 -348.05 -1.28 -4.11 16 21 C 0.18 1.25 11.13 83.54 0.93 2.18 16 22 C -0.22 -2.98 7.11 36.10 0.26 -2.72 16 23 N 0.07 1.44 4.45 -47.13 -0.21 1.23 16 24 O -0.18 -3.68 19.02 18.89 0.36 -3.32 16 25 O -0.20 -4.53 19.05 18.89 0.36 -4.17 16 26 C 0.12 1.56 11.75 85.24 1.00 2.56 16 27 N -0.29 -4.30 12.42 -57.02 -0.71 -5.00 16 28 C -0.32 -13.98 6.96 23.00 0.16 -13.82 16 29 H 0.30 13.43 8.29 -92.71 -0.77 12.66 16 30 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 31 H 0.16 5.72 8.06 -2.91 -0.02 5.70 16 32 H 0.43 9.05 8.72 -92.70 -0.81 8.25 16 33 H 0.42 2.38 8.49 -92.71 -0.79 1.59 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.16 -1.00 8.07 -2.39 -0.02 -1.02 16 37 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.25 -0.51 8.06 -2.91 -0.02 -0.53 16 39 H 0.22 2.08 8.06 -2.91 -0.02 2.05 16 40 H 0.12 4.90 4.79 -2.91 -0.01 4.89 16 Total: -1.00 -81.66 360.66 1.66 -80.00 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -0.53 Total: 16.85 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 7.68 Total: 8.28 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -7.83 Total: -113.74 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: 0.66 Total: -31.25 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.68 Total: 39.85 kcal Total: -81.66 1.66 -80.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672185149.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.125 kcal (2) G-P(sol) polarization free energy of solvation -81.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds