Wall clock time and date at job start Sat Apr 11 2020 07:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.38277 * 119.98580 * 269.71637 * 11 10 9 13 13 C 1.38220 * 120.04953 * 179.77046 * 12 11 10 14 14 C 1.38221 * 120.02576 * 0.51339 * 13 12 11 15 15 C 1.50700 * 120.01102 * 179.77155 * 14 13 12 16 16 N 1.46501 * 109.46542 * 259.97498 * 15 14 13 17 17 C 1.34778 * 119.99558 * 180.02562 * 16 15 14 18 18 O 1.21584 * 120.00102 * 0.02562 * 17 16 15 19 19 C 1.47541 * 119.99790 * 179.97438 * 17 16 15 20 20 C 1.39803 * 120.98037 * 359.97438 * 19 17 16 21 21 N 1.32188 * 118.98136 * 179.97438 * 20 19 17 22 22 C 1.31940 * 121.13888 * 0.02562 * 21 20 19 23 23 N 1.31731 * 122.19689 * 0.02562 * 22 21 20 24 24 C 1.32773 * 120.87030 * 359.72159 * 23 22 21 25 25 O 1.35276 * 120.61534 * 180.28220 * 24 23 22 26 26 C 1.38441 * 119.97538 * 359.74123 * 14 13 12 27 27 F 1.35100 * 120.02602 * 179.97438 * 26 14 13 28 28 C 1.38170 * 119.98783 * 90.00110 * 11 10 9 29 29 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 32 32 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 33 33 H 1.07998 * 119.96920 * 0.02860 * 12 11 10 34 34 H 1.07997 * 119.98536 * 180.26291 * 13 12 11 35 35 H 1.08995 * 109.47283 * 19.97129 * 15 14 13 36 36 H 1.08998 * 109.47241 * 139.97782 * 15 14 13 37 37 H 0.96997 * 120.00581 * 0.02562 * 16 15 14 38 38 H 1.08000 * 120.50884 * 0.02562 * 20 19 17 39 39 H 1.07998 * 118.90381 * 179.97438 * 22 21 20 40 40 H 0.96696 * 114.00609 * 270.24846 * 25 24 23 41 41 H 1.07998 * 120.01636 * 359.95186 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.2697 -2.0712 -1.2113 13 6 7.6277 -1.8138 -1.2172 14 6 8.3135 -1.6909 -0.0235 15 6 9.7951 -1.4154 -0.0303 16 7 10.5249 -2.6641 0.2028 17 6 11.8722 -2.6604 0.2393 18 8 12.4819 -1.6207 0.0791 19 6 12.6073 -3.9179 0.4746 20 6 11.9270 -5.1247 0.6628 21 7 12.6251 -6.2278 0.8702 22 6 13.9439 -6.2048 0.9021 23 7 14.6309 -5.0938 0.7314 24 6 14.0144 -3.9385 0.5123 25 8 14.7251 -2.8017 0.3321 26 6 7.6388 -1.8203 1.1784 27 9 8.3082 -1.7008 2.3458 28 6 6.2772 -2.0729 1.1831 29 1 -0.4851 0.8401 0.0004 30 1 3.8646 -0.3620 0.0004 31 1 3.8521 -3.0451 0.8825 32 1 3.8454 -3.0397 -0.8974 33 1 5.7353 -2.1712 -2.1445 34 1 8.1538 -1.7128 -2.1549 35 1 10.0832 -1.0012 -0.9965 36 1 10.0356 -0.7015 0.7574 37 1 10.0386 -3.4936 0.3309 38 1 10.8477 -5.1553 0.6384 39 1 14.4781 -7.1274 1.0746 40 1 14.9116 -2.3206 1.1499 41 1 5.7497 -2.1737 2.1201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677643351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:46:02 Heat of formation + Delta-G solvation = -22.596286 kcal Electronic energy + Delta-G solvation = -28383.207242 eV Core-core repulsion = 23985.972782 eV Total energy + Delta-G solvation = -4397.234461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.123 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.02834 -41.92108 -39.97411 -39.21801 -38.14780 -35.84851 -34.70838 -34.01226 -32.70642 -31.95741 -30.81292 -30.49052 -27.73270 -25.91252 -24.94447 -24.28122 -22.99394 -22.26362 -21.44437 -20.99331 -19.81784 -18.61430 -18.55109 -18.03981 -17.09494 -16.82426 -16.69354 -16.33104 -15.79257 -15.67617 -15.51965 -15.13903 -14.78231 -14.68505 -14.41709 -14.33490 -14.16968 -13.84975 -13.52604 -13.19090 -13.06306 -12.76937 -12.46370 -12.29523 -12.11619 -11.89000 -11.69535 -11.46566 -11.30685 -10.94049 -10.80653 -10.40097 -10.26813 -10.23593 -9.99708 -9.69056 -9.55820 -9.04270 -9.01982 -8.74797 -7.36638 -5.85861 -3.23443 -0.24596 0.26899 0.88056 1.11244 2.31835 2.55422 2.75538 3.13114 3.32011 3.35428 3.37961 3.40046 3.48683 3.64636 4.06440 4.08868 4.15383 4.29199 4.51392 4.56859 4.61001 4.77832 4.87087 4.96913 5.25378 5.31455 5.36719 5.43520 5.46503 5.57658 5.72682 5.83450 5.87648 5.94097 6.13148 6.16219 6.18065 6.34949 6.70449 6.78457 6.83315 6.92738 7.31069 7.64956 7.87463 8.32066 9.09609 9.81693 10.00084 11.31859 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.001987 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.023005 B =14085.761419 C =14600.045929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.750 5.750 10 C 0.188 3.812 11 C -0.041 4.041 12 C -0.116 4.116 13 C -0.074 4.074 14 C -0.160 4.160 15 C 0.170 3.830 16 N -0.718 5.718 17 C 0.569 3.431 18 O -0.515 6.515 19 C -0.261 4.261 20 C 0.200 3.800 21 N -0.527 5.527 22 C 0.342 3.658 23 N -0.543 5.543 24 C 0.421 3.579 25 O -0.454 6.454 26 C 0.111 3.889 27 F -0.138 7.138 28 C -0.141 4.141 29 H 0.261 0.739 30 H 0.363 0.637 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.400 0.600 38 H 0.176 0.824 39 H 0.209 0.791 40 H 0.415 0.585 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.183 -10.921 1.438 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.396 5.396 10 C 0.062 3.938 11 C -0.042 4.042 12 C -0.135 4.135 13 C -0.092 4.092 14 C -0.162 4.162 15 C 0.047 3.953 16 N -0.370 5.370 17 C 0.354 3.646 18 O -0.391 6.391 19 C -0.270 4.270 20 C 0.034 3.966 21 N -0.242 5.242 22 C 0.056 3.944 23 N -0.268 5.268 24 C 0.232 3.768 25 O -0.263 6.263 26 C 0.091 3.909 27 F -0.116 7.116 28 C -0.160 4.160 29 H 0.071 0.929 30 H 0.196 0.804 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.235 0.765 38 H 0.193 0.807 39 H 0.225 0.775 40 H 0.277 0.723 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 28.896 -11.108 0.947 30.972 hybrid contribution -0.066 1.802 0.602 1.901 sum 28.830 -9.307 1.549 30.334 Atomic orbital electron populations 1.69693 1.05087 1.26009 1.56933 1.24663 0.95226 0.97251 1.01645 0.86573 0.79270 0.84939 0.77916 1.20917 1.21565 1.20288 1.19028 0.80201 0.94885 1.43864 0.88986 1.42661 1.03974 1.01630 1.91327 1.19707 0.83866 0.90095 1.00142 1.20330 0.97432 0.94548 0.91864 1.21272 0.93812 0.99780 0.98636 1.20953 0.94318 0.97270 0.96706 1.19731 0.95427 1.08401 0.92628 1.20088 0.86048 0.85881 1.03261 1.45955 1.05674 1.11913 1.73461 1.17557 0.81983 0.87573 0.77534 1.90849 1.67713 1.32200 1.48378 1.22026 0.95514 0.97288 1.12217 1.23527 1.01137 0.85938 0.86038 1.68464 1.09426 1.30362 1.15959 1.25153 0.86894 0.95486 0.86913 1.68190 1.42759 0.99521 1.16340 1.19486 0.85777 0.86674 0.84836 1.84644 1.73926 1.31837 1.35849 1.17545 0.90412 1.02199 0.80715 1.91495 1.80467 1.93393 1.46293 1.21189 0.91927 1.02644 1.00232 0.92895 0.80391 0.94183 0.93931 0.84653 0.84887 0.89672 0.90009 0.76451 0.80724 0.77515 0.72258 0.84219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.97 55.49 0.78 -27.76 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 21.64 27.74 -169.99 -4.71 16.93 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 7 C -0.25 -6.82 10.47 -15.06 -0.16 -6.98 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 9 N -0.75 -16.91 5.40 -61.09 -0.33 -17.24 16 10 C 0.19 3.30 6.38 -5.19 -0.03 3.26 16 11 C -0.04 -0.58 5.25 -104.63 -0.55 -1.13 16 12 C -0.12 -1.39 9.70 -39.57 -0.38 -1.77 16 13 C -0.07 -0.73 9.67 -39.59 -0.38 -1.11 16 14 C -0.16 -1.63 5.25 -104.55 -0.55 -2.18 16 15 C 0.17 1.57 5.52 -5.19 -0.03 1.54 16 16 N -0.72 -5.75 5.51 -62.53 -0.34 -6.09 16 17 C 0.57 5.47 7.78 -12.47 -0.10 5.37 16 18 O -0.52 -6.58 15.32 -15.85 -0.24 -6.82 16 19 C -0.26 -2.13 5.92 -104.56 -0.62 -2.75 16 20 C 0.20 1.29 10.80 -16.81 -0.18 1.11 16 21 N -0.53 -3.75 10.42 -14.29 -0.15 -3.89 16 22 C 0.34 2.18 12.27 -92.08 -1.13 1.05 16 23 N -0.54 -4.54 10.45 -14.32 -0.15 -4.69 16 24 C 0.42 3.75 7.85 -16.19 -0.13 3.63 16 25 O -0.45 -4.02 11.81 -38.67 -0.46 -4.48 16 26 C 0.11 1.32 7.25 -39.41 -0.29 1.04 16 27 F -0.14 -1.70 16.67 2.25 0.04 -1.66 16 28 C -0.14 -1.87 9.68 -39.51 -0.38 -2.25 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.36 8.15 5.52 -40.82 -0.23 7.93 16 31 H 0.04 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.13 1.00 8.04 -52.49 -0.42 0.58 16 35 H 0.09 0.76 8.00 -51.93 -0.42 0.34 16 36 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 37 H 0.40 2.37 6.59 -40.82 -0.27 2.10 16 38 H 0.18 0.63 6.53 -52.49 -0.34 0.29 16 39 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.42 1.89 9.06 45.56 0.41 2.30 16 41 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -35.40 365.69 -8.44 -43.84 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -3.37 Total: 7.39 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -5.00 Total: -1.02 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.20 Total: -59.68 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.70 Total: -11.30 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.40 -8.44 -43.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677643351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.240 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds