Wall clock time and date at job start Sat Apr 11 2020 07:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.38277 * 119.98580 * 269.71637 * 11 10 9 13 13 C 1.38220 * 120.04953 * 179.77046 * 12 11 10 14 14 C 1.38221 * 120.02576 * 0.51339 * 13 12 11 15 15 C 1.50700 * 120.01102 * 179.77155 * 14 13 12 16 16 N 1.46501 * 109.46542 * 259.97498 * 15 14 13 17 17 C 1.34778 * 119.99558 * 180.02562 * 16 15 14 18 18 O 1.21584 * 120.00102 * 0.02562 * 17 16 15 19 19 C 1.47541 * 119.99790 * 179.97438 * 17 16 15 20 20 C 1.39803 * 120.98037 * 359.97438 * 19 17 16 21 21 N 1.32188 * 118.98136 * 179.97438 * 20 19 17 22 22 C 1.31940 * 121.13888 * 0.02562 * 21 20 19 23 23 N 1.31731 * 122.19689 * 0.02562 * 22 21 20 24 24 C 1.32773 * 120.87030 * 359.72159 * 23 22 21 25 25 O 1.35276 * 120.61534 * 180.28220 * 24 23 22 26 26 C 1.38441 * 119.97538 * 359.74123 * 14 13 12 27 27 F 1.35100 * 120.02602 * 179.97438 * 26 14 13 28 28 C 1.38170 * 119.98783 * 90.00110 * 11 10 9 29 29 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 32 32 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 33 33 H 1.07998 * 119.96920 * 0.02860 * 12 11 10 34 34 H 1.07997 * 119.98536 * 180.26291 * 13 12 11 35 35 H 1.08995 * 109.47283 * 19.97129 * 15 14 13 36 36 H 1.08998 * 109.47241 * 139.97782 * 15 14 13 37 37 H 0.96997 * 120.00581 * 0.02562 * 16 15 14 38 38 H 1.08000 * 120.50884 * 0.02562 * 20 19 17 39 39 H 1.07998 * 118.90381 * 179.97438 * 22 21 20 40 40 H 0.96696 * 114.00609 * 270.24846 * 25 24 23 41 41 H 1.07998 * 120.01636 * 359.95186 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.2697 -2.0712 -1.2113 13 6 7.6277 -1.8138 -1.2172 14 6 8.3135 -1.6909 -0.0235 15 6 9.7951 -1.4154 -0.0303 16 7 10.5249 -2.6641 0.2028 17 6 11.8722 -2.6604 0.2393 18 8 12.4819 -1.6207 0.0791 19 6 12.6073 -3.9179 0.4746 20 6 11.9270 -5.1247 0.6628 21 7 12.6251 -6.2278 0.8702 22 6 13.9439 -6.2048 0.9021 23 7 14.6309 -5.0938 0.7314 24 6 14.0144 -3.9385 0.5123 25 8 14.7251 -2.8017 0.3321 26 6 7.6388 -1.8203 1.1784 27 9 8.3082 -1.7008 2.3458 28 6 6.2772 -2.0729 1.1831 29 1 -0.4851 0.8401 0.0004 30 1 3.8646 -0.3620 0.0004 31 1 3.8521 -3.0451 0.8825 32 1 3.8454 -3.0397 -0.8974 33 1 5.7353 -2.1712 -2.1445 34 1 8.1538 -1.7128 -2.1549 35 1 10.0832 -1.0012 -0.9965 36 1 10.0356 -0.7015 0.7574 37 1 10.0386 -3.4936 0.3309 38 1 10.8477 -5.1553 0.6384 39 1 14.4781 -7.1274 1.0746 40 1 14.9116 -2.3206 1.1499 41 1 5.7497 -2.1737 2.1201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677643351.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:46:00 Heat of formation + Delta-G solvation = -49.476149 kcal Electronic energy + Delta-G solvation = -28384.372841 eV Core-core repulsion = 23985.972782 eV Total energy + Delta-G solvation = -4398.400059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.123 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -49.97362 -42.48283 -40.76872 -40.10183 -38.74443 -37.07631 -35.94471 -34.64392 -33.91010 -33.06668 -32.05628 -31.50772 -28.89086 -26.74421 -25.80125 -25.12532 -24.02039 -23.77530 -22.19093 -22.05119 -20.38246 -19.94278 -19.22311 -19.17344 -17.92196 -17.74519 -17.55895 -17.10303 -16.74258 -16.53041 -16.45857 -16.32069 -15.82835 -15.77288 -15.33711 -15.08054 -14.96832 -14.86655 -14.77160 -14.50701 -14.09981 -13.98453 -13.54158 -13.36115 -13.30528 -13.01780 -12.84112 -12.54097 -12.50292 -12.19057 -11.92946 -11.85891 -11.79355 -11.13376 -11.03220 -10.86588 -10.54322 -10.26166 -9.98606 -9.69331 -9.33861 -8.04118 -5.38506 -0.79344 -0.26383 -0.05752 0.19560 1.38003 1.40059 1.47444 1.65737 1.87370 2.20096 2.46778 2.54565 2.58710 2.95792 3.14351 3.15462 3.27810 3.39983 3.50483 3.65778 3.67761 3.81418 3.91387 4.10599 4.15528 4.29760 4.33192 4.50551 4.57003 4.72541 4.79885 4.96106 5.01847 5.02990 5.12712 5.14045 5.28799 5.60419 5.60667 5.74078 5.84666 6.19010 6.28377 6.37894 6.80089 6.97408 7.05181 7.79630 7.98438 9.16848 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.001987 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.023005 B =14085.761419 C =14600.045929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.256 1.256 7 C -0.235 4.235 8 H 0.062 0.938 9 N -0.753 5.753 10 C 0.187 3.813 11 C -0.057 4.057 12 C -0.114 4.114 13 C -0.060 4.060 14 C -0.142 4.142 15 C 0.172 3.828 16 N -0.707 5.707 17 C 0.572 3.428 18 O -0.552 6.552 19 C -0.272 4.272 20 C 0.210 3.790 21 N -0.538 5.538 22 C 0.345 3.655 23 N -0.562 5.562 24 C 0.411 3.589 25 O -0.471 6.471 26 C 0.106 3.894 27 F -0.142 7.142 28 C -0.148 4.148 29 H 0.258 0.742 30 H 0.366 0.634 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.144 0.856 34 H 0.166 0.834 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.412 0.588 38 H 0.203 0.797 39 H 0.241 0.759 40 H 0.428 0.572 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.659 -11.320 0.806 32.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.253 4.253 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.181 1.181 7 C -0.366 4.366 8 H 0.080 0.920 9 N -0.399 5.399 10 C 0.062 3.938 11 C -0.058 4.058 12 C -0.133 4.133 13 C -0.078 4.078 14 C -0.143 4.143 15 C 0.050 3.950 16 N -0.359 5.359 17 C 0.358 3.642 18 O -0.430 6.430 19 C -0.281 4.281 20 C 0.044 3.956 21 N -0.253 5.253 22 C 0.060 3.940 23 N -0.287 5.287 24 C 0.223 3.777 25 O -0.282 6.282 26 C 0.086 3.914 27 F -0.120 7.120 28 C -0.168 4.168 29 H 0.067 0.933 30 H 0.199 0.801 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.162 0.838 34 H 0.183 0.817 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.249 0.751 38 H 0.219 0.781 39 H 0.257 0.743 40 H 0.293 0.707 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 31.413 -11.559 0.330 33.474 hybrid contribution -0.769 1.759 0.820 2.087 sum 30.645 -9.800 1.150 32.194 Atomic orbital electron populations 1.69869 1.07049 1.26719 1.59456 1.25470 0.96065 1.01147 1.02583 0.85461 0.78514 0.79884 0.78240 1.20109 1.22365 1.18058 1.19034 0.82387 0.93649 1.41485 0.91972 1.42678 1.02414 1.03714 1.91095 1.19773 0.86067 0.87950 1.00035 1.19964 0.95332 0.97309 0.93172 1.21400 0.94714 0.99160 0.98029 1.21227 0.93396 0.95398 0.97790 1.19821 0.95784 1.06658 0.92082 1.20034 0.85313 0.86171 1.03522 1.45805 1.05246 1.12108 1.72780 1.17704 0.82180 0.87521 0.76759 1.90831 1.68457 1.33517 1.50239 1.21897 0.95171 0.97286 1.13792 1.23946 1.02302 0.85070 0.84327 1.68573 1.09781 1.30429 1.16506 1.25865 0.86980 0.95992 0.85180 1.68256 1.43253 0.99843 1.17337 1.19697 0.86262 0.86864 0.84927 1.84591 1.74100 1.32262 1.37235 1.17564 0.89993 1.02637 0.81188 1.91491 1.80381 1.93471 1.46673 1.21127 0.92651 1.03227 0.99778 0.93276 0.80110 0.94465 0.93387 0.83802 0.81661 0.88653 0.91021 0.75071 0.78057 0.74302 0.70698 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.72 13.97 21.65 0.30 -61.42 16 2 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 3 Si 0.95 44.62 27.74 68.60 1.90 46.52 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.26 -10.95 6.52 99.48 0.65 -10.30 16 7 C -0.23 -12.95 10.47 84.03 0.88 -12.07 16 8 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 9 N -0.75 -33.39 5.40 -347.18 -1.87 -35.26 16 10 C 0.19 6.41 6.38 85.63 0.55 6.95 16 11 C -0.06 -1.50 5.25 -19.87 -0.10 -1.61 16 12 C -0.11 -2.38 9.70 22.27 0.22 -2.17 16 13 C -0.06 -0.94 9.67 22.26 0.22 -0.73 16 14 C -0.14 -2.43 5.25 -19.82 -0.10 -2.53 16 15 C 0.17 2.69 5.52 85.63 0.47 3.16 16 16 N -0.71 -9.47 5.51 -470.01 -2.59 -12.06 16 17 C 0.57 10.06 7.78 86.70 0.67 10.74 16 18 O -0.55 -13.56 15.32 16.24 0.25 -13.32 16 19 C -0.27 -4.02 5.92 -19.82 -0.12 -4.14 16 20 C 0.21 2.21 10.80 85.02 0.92 3.13 16 21 N -0.54 -6.36 10.42 -199.12 -2.07 -8.43 16 22 C 0.35 3.68 12.27 180.86 2.22 5.90 16 23 N -0.56 -8.66 10.45 -312.04 -3.26 -11.92 16 24 C 0.41 6.96 7.85 85.17 0.67 7.63 16 25 O -0.47 -8.23 11.81 -65.40 -0.77 -9.00 16 26 C 0.11 2.28 7.25 22.38 0.16 2.45 16 27 F -0.14 -3.23 16.67 44.97 0.75 -2.48 16 28 C -0.15 -3.71 9.68 22.31 0.22 -3.49 16 29 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 30 H 0.37 15.75 5.52 -92.71 -0.51 15.24 16 31 H 0.04 1.30 8.09 -2.38 -0.02 1.28 16 32 H 0.05 1.60 8.08 -2.39 -0.02 1.58 16 33 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 34 H 0.17 1.61 8.04 -2.91 -0.02 1.59 16 35 H 0.10 1.36 8.00 -2.39 -0.02 1.35 16 36 H 0.07 1.33 7.95 -2.39 -0.02 1.31 16 37 H 0.41 3.55 6.59 -92.71 -0.61 2.94 16 38 H 0.20 0.79 6.53 -2.91 -0.02 0.77 16 39 H 0.24 0.61 8.06 -2.91 -0.02 0.59 16 40 H 0.43 3.94 9.06 -74.06 -0.67 3.27 16 41 H 0.13 3.42 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -77.50 365.69 -0.75 -78.25 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.72 Total: 18.93 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 7.33 Total: 10.19 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -9.49 Total: -129.09 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.52 Total: -22.32 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.75 Total: -2.48 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Total: -77.50 -0.75 -78.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677643351.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.776 kcal (2) G-P(sol) polarization free energy of solvation -77.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds