Wall clock time and date at job start Sat Apr 11 2020 07:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81398 * 102.99978 * 2 1 4 4 C 1.50703 * 109.47357 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99766 * 0.02562 * 4 3 2 6 6 N 1.34770 * 120.00245 * 179.97438 * 4 3 2 7 7 C 1.47026 * 125.65022 * 359.97438 * 6 4 3 8 8 C 1.54318 * 107.27428 * 178.97501 * 7 6 4 9 9 H 1.09001 * 110.71785 * 219.26414 * 8 7 6 10 10 N 1.46496 * 110.72288 * 96.16904 * 8 7 6 11 11 C 1.34777 * 120.00271 * 86.45006 * 10 8 7 12 12 O 1.21278 * 119.99854 * 0.02562 * 11 10 8 13 13 C 1.50703 * 120.00161 * 180.02562 * 11 10 8 14 14 S 1.81002 * 109.47178 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00092 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00019 * 0.02562 * 15 14 13 17 17 C 1.38795 * 119.99810 * 179.97438 * 15 14 13 18 18 N 1.31626 * 120.00234 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99664 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47169 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47114 * 120.00091 * 19 17 15 22 22 H 1.48505 * 109.46890 * 239.99700 * 19 17 15 23 23 C 1.55153 * 102.94194 * 337.80266 * 8 7 6 24 24 C 1.53002 * 111.00422 * 153.57646 * 23 8 7 25 25 C 1.52998 * 111.00672 * 277.42878 * 23 8 7 26 26 C 1.47431 * 125.65284 * 180.02562 * 6 4 3 27 27 H 1.08996 * 109.47139 * 299.99700 * 1 2 3 28 28 H 1.08995 * 109.47115 * 60.00069 * 1 2 3 29 29 H 1.09007 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47397 * 59.99890 * 3 2 1 31 31 H 1.09001 * 109.47564 * 300.00117 * 3 2 1 32 32 H 1.09004 * 109.88563 * 59.55118 * 7 6 4 33 33 H 1.09010 * 109.87949 * 298.39212 * 7 6 4 34 34 H 0.97005 * 120.00266 * 266.45589 * 10 8 7 35 35 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 36 36 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 37 37 H 0.97005 * 119.99806 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.46955 * 59.99995 * 24 23 8 39 39 H 1.09004 * 109.47193 * 180.02562 * 24 23 8 40 40 H 1.09001 * 109.47322 * 300.00236 * 24 23 8 41 41 H 1.09000 * 109.47226 * 60.00210 * 25 23 8 42 42 H 1.09004 * 109.47044 * 180.02562 * 25 23 8 43 43 H 1.08993 * 109.46948 * 299.99750 * 25 23 8 44 44 H 1.08997 * 110.36103 * 322.93792 * 26 6 4 45 45 H 1.08999 * 110.36632 * 85.14405 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9374 0.0006 5 8 4.4404 0.9621 0.0006 6 7 4.2574 3.1731 0.0002 7 6 3.5041 4.4357 -0.0014 8 6 4.5346 5.5841 0.0251 9 1 4.1941 6.3928 0.6717 10 7 4.7933 6.0797 -1.3290 11 6 4.0016 7.0320 -1.8608 12 8 3.0752 7.4789 -1.2182 13 6 4.2674 7.5414 -3.2540 14 16 3.0429 8.8051 -3.6782 15 6 3.5751 9.2120 -5.3079 16 1 4.4303 8.7114 -5.7375 17 6 2.8947 10.1750 -6.0399 18 7 1.8515 10.7841 -5.5170 19 14 3.4585 10.6059 -7.7679 20 1 4.6447 9.7852 -8.1206 21 1 2.3613 10.3299 -8.7298 22 1 3.8179 12.0456 -7.8268 23 6 5.7993 4.9028 0.6113 24 6 7.0714 5.6123 0.1430 25 6 5.7349 4.8486 2.1389 26 6 5.6989 3.4827 0.0002 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8031 2.2372 0.8900 31 1 1.8031 2.2372 -0.8900 32 1 2.8673 4.4886 0.8817 33 1 2.8964 4.5036 -0.9038 34 1 5.5344 5.7225 -1.8429 35 1 4.1981 6.7157 -3.9622 36 1 5.2666 7.9748 -3.2979 37 1 1.3762 11.4574 -6.0285 38 1 7.0499 6.6513 0.4720 39 1 7.9428 5.1142 0.5681 40 1 7.1278 5.5768 -0.9449 41 1 4.8574 4.2793 2.4457 42 1 6.6337 4.3667 2.5236 43 1 5.6679 5.8615 2.5359 44 1 6.2409 2.7653 0.6164 45 1 6.0880 3.4774 -1.0179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678771677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:46:09 Heat of formation + Delta-G solvation = -69.355986 kcal Electronic energy + Delta-G solvation = -25919.326112 eV Core-core repulsion = 22189.428375 eV Total energy + Delta-G solvation = -3729.897737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.01773 -39.28348 -38.02491 -34.38505 -33.51253 -32.48183 -30.67039 -30.17701 -29.11256 -28.52283 -27.32834 -26.38833 -25.53341 -23.30645 -20.56196 -19.83822 -19.70939 -17.92511 -17.40738 -16.98938 -16.56410 -16.39211 -16.09166 -15.47027 -14.93263 -14.85144 -14.78668 -14.48434 -14.21818 -14.04309 -13.92000 -13.61221 -13.40470 -13.18741 -13.00612 -12.88782 -12.70667 -12.57979 -12.51435 -12.44200 -12.22198 -11.99732 -11.37475 -11.33057 -11.11099 -11.07555 -10.95778 -10.79034 -10.31058 -10.28588 -9.86287 -9.56312 -9.16939 -9.10987 -8.96650 -8.30868 -7.96994 -6.56609 -6.27339 -3.98255 1.12397 2.20169 2.26232 2.63815 2.89967 2.92106 3.17962 3.23921 3.28250 3.58747 3.77404 4.13823 4.15315 4.26037 4.41769 4.59592 4.68850 4.80054 4.81443 4.82024 4.85345 5.01708 5.03431 5.08410 5.21662 5.27533 5.35111 5.37628 5.38351 5.43274 5.50476 5.50938 5.61533 5.74451 5.79250 5.80362 5.86376 5.94637 6.05862 6.45304 7.07840 7.52503 7.55256 7.77124 8.30081 8.44928 9.18585 10.80087 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.011488 B = 0.002477 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.790863 B =11300.631955 C =12833.465765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.188 6.188 3 C -0.125 4.125 4 C 0.548 3.452 5 O -0.521 6.521 6 N -0.612 5.612 7 C 0.085 3.915 8 C 0.147 3.853 9 H 0.112 0.888 10 N -0.730 5.730 11 C 0.535 3.465 12 O -0.515 6.515 13 C -0.154 4.154 14 S -0.059 6.059 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.084 4.084 24 C -0.136 4.136 25 C -0.134 4.134 26 C 0.116 3.884 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.399 0.601 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.268 0.732 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -16.600 14.761 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.037 5.963 3 C -0.275 4.275 4 C 0.335 3.665 5 O -0.396 6.396 6 N -0.348 5.348 7 C -0.039 4.039 8 C 0.041 3.959 9 H 0.130 0.870 10 N -0.385 5.385 11 C 0.321 3.679 12 O -0.388 6.388 13 C -0.305 4.305 14 S 0.167 5.833 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.086 4.086 24 C -0.194 4.194 25 C -0.191 4.191 26 C -0.007 4.007 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.235 0.765 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.535 -17.186 15.796 23.779 hybrid contribution 0.703 0.793 -2.208 2.449 sum 5.238 -16.392 13.588 21.927 Atomic orbital electron populations 1.23546 0.95505 1.06793 1.05140 1.87442 1.04972 1.05875 1.98045 1.23502 0.97255 0.99398 1.07382 1.19255 0.88856 0.81782 0.76576 1.90760 1.62082 1.37527 1.49265 1.48328 1.07825 1.05096 1.73516 1.22684 0.95356 0.82864 1.02994 1.21853 0.93561 0.95336 0.85175 0.87029 1.46096 1.34388 1.42022 1.16008 1.20361 0.81449 0.77906 0.88152 1.90707 1.29387 1.56873 1.61859 1.23539 1.06898 1.05112 0.94943 1.85377 1.36102 1.43292 1.18489 1.22896 1.18262 1.26757 1.00434 0.90867 1.24991 0.94588 0.95090 0.98904 1.70021 1.18187 1.24637 1.37419 0.86117 0.78665 0.78360 0.82365 1.19602 1.20544 1.20535 1.22050 0.95446 0.94230 0.96827 1.21708 0.95324 1.00927 1.01399 1.21714 1.02525 1.02634 0.92258 1.22385 0.81434 0.95677 1.01173 0.90408 0.90263 0.87698 0.87164 0.86998 0.90249 0.90214 0.76495 0.89228 0.89124 0.92201 0.91273 0.91743 0.92072 0.92205 0.91707 0.91599 0.89810 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 10.76 101.05 1.09 0.15 16 2 S -0.19 -1.96 21.52 -107.50 -2.31 -4.27 16 3 C -0.12 -1.15 5.62 36.01 0.20 -0.94 16 4 C 0.55 6.37 7.87 -10.99 -0.09 6.29 16 5 O -0.52 -7.90 16.12 5.55 0.09 -7.81 16 6 N -0.61 -5.99 3.31 -170.50 -0.56 -6.55 16 7 C 0.09 0.80 5.91 -3.06 -0.02 0.78 16 8 C 0.15 1.41 2.51 -66.10 -0.17 1.24 16 9 H 0.11 1.19 7.60 -51.93 -0.39 0.80 16 10 N -0.73 -8.23 4.57 -52.04 -0.24 -8.47 16 11 C 0.53 8.81 7.84 -10.98 -0.09 8.72 16 12 O -0.51 -10.36 15.59 5.56 0.09 -10.28 16 13 C -0.15 -2.89 6.16 36.01 0.22 -2.67 16 14 S -0.06 -1.53 20.57 -107.50 -2.21 -3.75 16 15 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 16 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 17 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 18 N -0.87 -25.58 13.22 55.49 0.73 -24.84 16 19 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 C -0.08 -0.61 0.83 -152.36 -0.13 -0.74 16 24 C -0.14 -0.88 8.22 37.16 0.31 -0.57 16 25 C -0.13 -0.87 8.57 37.16 0.32 -0.55 16 26 C 0.12 1.00 5.81 -2.52 -0.01 0.98 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 31 H 0.11 0.93 8.14 -51.92 -0.42 0.50 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.86 8.04 -51.92 -0.42 0.45 16 34 H 0.40 3.68 6.90 -40.82 -0.28 3.39 16 35 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 36 H 0.09 1.56 8.14 -51.91 -0.42 1.14 16 37 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.38 6.38 -51.93 -0.33 0.05 16 41 H 0.06 0.42 7.91 -51.93 -0.41 0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 45 H 0.07 0.61 7.99 -51.93 -0.41 0.19 16 LS Contribution 397.45 15.07 5.99 5.99 Total: -1.00 -35.11 397.45 -8.90 -44.01 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -7.28 Total: -0.12 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 1.83 Total: 0.13 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: -0.07 Total: -39.87 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.18 Total: -18.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -4.52 Total: -8.02 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.11 -8.90 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678771677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.348 kcal (2) G-P(sol) polarization free energy of solvation -35.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds