Wall clock time and date at job start Sat Apr 11 2020 07:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81398 * 103.00517 * 2 1 4 4 C 1.53002 * 109.47560 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47222 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99699 * 359.97438 * 5 4 3 7 7 N 1.34770 * 120.00111 * 180.02562 * 5 4 3 8 8 C 1.47427 * 125.64668 * 0.02637 * 7 5 4 9 9 C 1.54909 * 104.83281 * 204.09342 * 8 7 5 10 10 C 1.55158 * 101.61642 * 322.96922 * 9 8 7 11 11 H 1.09005 * 110.72041 * 277.15972 * 10 9 8 12 12 N 1.46498 * 110.72351 * 153.88368 * 10 9 8 13 13 C 1.34779 * 119.99910 * 86.45393 * 12 10 9 14 14 O 1.21287 * 119.99599 * 0.02562 * 13 12 10 15 15 C 1.50694 * 119.99874 * 179.97438 * 13 12 10 16 16 S 1.81001 * 109.47109 * 179.97438 * 15 13 12 17 17 C 1.76199 * 100.00181 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99788 * 359.97438 * 17 16 15 19 19 C 1.38797 * 120.00221 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00246 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99822 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47240 * 90.00480 * 21 19 17 23 23 H 1.48499 * 109.47098 * 210.00526 * 21 19 17 24 24 H 1.48500 * 109.47381 * 330.00367 * 21 19 17 25 25 C 1.47014 * 125.65230 * 179.97438 * 7 5 4 26 26 H 1.09001 * 109.88533 * 59.55959 * 25 7 5 27 27 C 1.53004 * 109.88282 * 298.55125 * 25 7 5 28 28 H 1.09002 * 109.47152 * 300.00282 * 1 2 3 29 29 H 1.09001 * 109.46766 * 59.99830 * 1 2 3 30 30 H 1.08996 * 109.47607 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46885 * 59.99837 * 3 2 1 32 32 H 1.08995 * 109.47152 * 300.00123 * 3 2 1 33 33 H 1.08994 * 109.46599 * 60.00131 * 4 3 2 34 34 H 1.09003 * 109.47072 * 300.00095 * 4 3 2 35 35 H 1.09001 * 110.36908 * 85.25360 * 8 7 5 36 36 H 1.09000 * 110.46067 * 322.97720 * 8 7 5 37 37 H 1.09002 * 111.00594 * 81.06240 * 9 8 7 38 38 H 1.09002 * 111.00655 * 204.87504 * 9 8 7 39 39 H 0.97002 * 119.99842 * 266.45425 * 12 10 9 40 40 H 1.08993 * 109.47499 * 299.99888 * 15 13 12 41 41 H 1.09006 * 109.46949 * 60.00135 * 15 13 12 42 42 H 0.96998 * 120.00006 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.47092 * 61.44940 * 27 25 7 44 44 H 1.09007 * 109.47223 * 181.45428 * 27 25 7 45 45 H 1.09005 * 109.46875 * 301.44951 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0815 3.4082 0.0013 6 8 3.1944 4.2354 0.0008 7 7 5.3703 3.8022 0.0014 8 6 6.5422 2.9077 0.0004 9 6 7.6870 3.7532 0.6122 10 6 7.3842 5.1584 0.0281 11 1 7.7895 5.2528 -0.9794 12 7 7.9137 6.2082 0.9019 13 6 9.1912 6.6163 0.7672 14 8 9.9021 6.1146 -0.0778 15 6 9.7358 7.6966 1.6657 16 16 11.4656 8.0188 1.2416 17 6 11.8371 9.2830 2.4115 18 1 11.0779 9.6199 3.1018 19 6 13.1051 9.8465 2.4452 20 7 13.3828 10.7905 3.3195 21 14 14.4180 9.2642 1.2508 22 1 14.3585 10.0820 0.0126 23 1 15.7566 9.4105 1.8768 24 1 14.1826 7.8374 0.9134 25 6 5.8405 5.1952 0.0015 26 1 5.4670 5.7125 0.8852 27 6 5.3555 5.9082 -1.2624 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8032 2.2371 0.8900 32 1 1.8033 2.2371 -0.8899 33 1 4.1616 1.4702 -0.8891 34 1 4.1610 1.4703 0.8909 35 1 6.7923 2.6112 -1.0183 36 1 6.3505 2.0279 0.6146 37 1 7.6278 3.7616 1.7006 38 1 8.6601 3.3929 0.2787 39 1 7.3450 6.6096 1.5774 40 1 9.1529 8.6079 1.5327 41 1 9.6711 7.3722 2.7043 42 1 14.2688 11.1845 3.3428 43 1 4.2656 5.9190 -1.2779 44 1 5.7292 6.9321 -1.2681 45 1 5.7262 5.3813 -2.1417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001685166495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:46:27 Heat of formation + Delta-G solvation = -101.105767 kcal Electronic energy + Delta-G solvation = -25101.818146 eV Core-core repulsion = 21370.543635 eV Total energy + Delta-G solvation = -3731.274511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.65139 -40.51524 -38.69760 -35.37636 -34.66379 -34.12640 -32.34368 -32.19624 -30.33872 -29.80106 -27.86010 -26.44165 -25.95839 -23.56703 -22.32430 -21.76139 -20.09771 -19.73545 -18.50575 -18.05199 -17.53243 -17.16564 -17.04323 -16.79963 -16.66405 -16.40821 -15.92243 -15.51027 -15.00168 -14.96362 -14.80157 -14.75169 -14.52429 -14.38980 -14.17762 -13.91180 -13.60484 -13.46154 -13.35764 -13.33275 -13.06249 -12.99454 -12.87086 -12.63835 -12.62401 -12.43878 -12.26340 -11.86903 -11.82539 -11.16291 -11.06556 -11.02192 -10.90698 -10.52886 -10.17159 -9.78349 -8.98044 -8.72033 -8.50691 -6.21359 0.60501 0.98934 1.32701 1.46098 1.51866 1.53469 1.55478 1.59114 1.81702 2.25047 2.31048 2.72252 2.87860 3.20400 3.49088 3.64453 3.80565 3.84086 3.87137 3.92760 4.12607 4.18421 4.24087 4.27738 4.31097 4.34088 4.45717 4.48957 4.53881 4.62125 4.68175 4.74215 4.82940 4.88134 4.88725 5.01374 5.06814 5.15964 5.24778 5.43368 5.71257 6.12353 6.36222 6.43767 6.94533 7.03470 7.15409 8.61727 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.037475 B = 0.001654 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.986377 B =16929.220955 C =17106.351762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.292 6.292 3 C -0.061 4.061 4 C -0.112 4.112 5 C 0.534 3.466 6 O -0.576 6.576 7 N -0.611 5.611 8 C 0.101 3.899 9 C -0.143 4.143 10 C 0.141 3.859 11 H 0.095 0.905 12 N -0.705 5.705 13 C 0.543 3.457 14 O -0.554 6.554 15 C -0.114 4.114 16 S -0.170 6.170 17 C -0.531 4.531 18 H 0.061 0.939 19 C 0.046 3.954 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.263 1.263 23 H -0.260 1.260 24 H -0.234 1.234 25 C 0.136 3.864 26 H 0.082 0.918 27 C -0.157 4.157 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.416 0.584 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.277 0.723 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.627 -23.032 -7.254 34.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.066 6.066 3 C -0.210 4.210 4 C -0.153 4.153 5 C 0.323 3.677 6 O -0.456 6.456 7 N -0.345 5.345 8 C -0.021 4.021 9 C -0.182 4.182 10 C 0.035 3.965 11 H 0.113 0.887 12 N -0.359 5.359 13 C 0.329 3.671 14 O -0.431 6.431 15 C -0.265 4.265 16 S 0.056 5.944 17 C -0.678 4.678 18 H 0.079 0.921 19 C -0.160 4.160 20 N -0.556 5.556 21 Si 0.737 3.263 22 H -0.188 1.188 23 H -0.185 1.185 24 H -0.158 1.158 25 C 0.031 3.969 26 H 0.099 0.901 27 C -0.215 4.215 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.253 0.747 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.238 -24.216 -8.566 34.638 hybrid contribution -1.139 2.407 1.229 2.933 sum -24.378 -21.809 -7.337 33.522 Atomic orbital electron populations 1.23451 0.91418 1.07585 1.05768 1.86848 1.10612 1.10948 1.98193 1.23001 0.98575 0.93674 1.05759 1.21342 0.95059 0.91555 1.07321 1.20593 0.80408 0.91676 0.75003 1.90708 1.47140 1.55951 1.51786 1.48529 1.05728 1.07402 1.72860 1.22567 0.82913 0.93652 1.02934 1.23213 0.99446 0.93724 1.01816 1.21997 0.91519 0.87640 0.95341 0.88737 1.45656 1.11554 1.40202 1.38507 1.19837 0.82029 0.82103 0.83141 1.90698 1.58632 1.57489 1.36308 1.23280 0.98688 1.01179 1.03321 1.84657 1.10504 1.49752 1.49484 1.22483 1.01466 1.23053 1.20845 0.92079 1.25570 0.99848 0.93845 0.96704 1.70018 1.23140 1.26239 1.36191 0.85862 0.79259 0.81705 0.79506 1.18766 1.18464 1.15812 1.21583 0.92171 0.83434 0.99678 0.90054 1.22073 1.01871 1.00795 0.96781 0.89778 0.89767 0.86753 0.90029 0.90025 0.86207 0.86152 0.89198 0.87287 0.89576 0.89294 0.74688 0.86972 0.86763 0.91408 0.92337 0.91138 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.76 113.37 1.22 0.36 16 2 S -0.29 -3.55 22.38 -56.49 -1.26 -4.81 16 3 C -0.06 -0.76 5.23 71.98 0.38 -0.39 16 4 C -0.11 -1.14 4.71 29.85 0.14 -1.00 16 5 C 0.53 8.73 7.64 87.66 0.67 9.40 16 6 O -0.58 -13.88 15.01 -3.04 -0.05 -13.92 16 7 N -0.61 -8.61 3.07 -787.86 -2.42 -11.03 16 8 C 0.10 0.94 6.69 86.85 0.58 1.52 16 9 C -0.14 -2.00 6.76 31.99 0.22 -1.79 16 10 C 0.14 2.51 2.77 46.22 0.13 2.64 16 11 H 0.09 2.01 7.42 -2.38 -0.02 1.99 16 12 N -0.71 -14.57 5.21 -436.73 -2.27 -16.84 16 13 C 0.54 16.81 7.85 87.65 0.69 17.49 16 14 O -0.55 -21.37 15.59 -3.05 -0.05 -21.42 16 15 C -0.11 -4.02 6.16 71.23 0.44 -3.58 16 16 S -0.17 -8.30 18.55 -56.49 -1.05 -9.35 16 17 C -0.53 -30.37 10.04 67.95 0.68 -29.69 16 18 H 0.06 3.70 8.03 -2.91 -0.02 3.67 16 19 C 0.05 2.65 5.50 84.86 0.47 3.11 16 20 N -0.92 -55.43 13.97 21.65 0.30 -55.13 16 21 Si 0.91 44.22 27.74 68.60 1.90 46.12 16 22 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.23 -11.20 6.74 99.48 0.67 -10.53 16 25 C 0.14 2.21 3.21 45.38 0.15 2.36 16 26 H 0.08 1.36 7.69 -2.39 -0.02 1.35 16 27 C -0.16 -2.79 9.11 71.98 0.66 -2.13 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 32 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 33 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.12 0.85 7.85 -2.39 -0.02 0.83 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.11 0.51 7.48 -2.39 -0.02 0.49 16 37 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.42 6.41 8.32 -92.71 -0.77 5.64 16 40 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 41 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 42 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.06 1.23 6.87 -2.39 -0.02 1.21 16 44 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -75.78 396.61 1.70 -74.08 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.18 Total: 14.00 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 6.41 Total: -1.69 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -4.39 Total: -83.00 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.09 Total: -35.34 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.90 Total: 46.12 kcal Atomic # 16 Polarization: -11.85 SS G_CDS: -2.31 Total: -14.17 kcal Total: -75.78 1.70 -74.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001685166495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.026 kcal (2) G-P(sol) polarization free energy of solvation -75.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds