Wall clock time and date at job start Sat Apr 11 2020 07:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47610 * 2 1 4 4 H 1.08996 * 109.47245 * 305.00144 * 3 2 1 5 5 S 1.81402 * 109.47072 * 64.99641 * 3 2 1 6 6 C 1.81399 * 103.00050 * 184.99960 * 5 3 2 7 7 C 1.50699 * 109.47265 * 185.00071 * 3 2 1 8 8 O 1.21282 * 120.00049 * 329.99450 * 7 3 2 9 9 N 1.34775 * 119.99946 * 150.00352 * 7 3 2 10 10 C 1.47585 * 134.49073 * 179.97438 * 9 7 3 11 11 C 1.53947 * 86.11441 * 155.35639 * 10 9 7 12 12 C 1.53006 * 113.73862 * 137.95352 * 11 10 9 13 13 N 1.46498 * 109.46726 * 174.99929 * 12 11 10 14 14 C 1.34779 * 120.00066 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99486 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00253 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.46942 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99912 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99871 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00210 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00060 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00322 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47022 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47271 * 119.99484 * 22 20 18 25 25 H 1.48490 * 109.47417 * 239.99994 * 22 20 18 26 26 C 1.47577 * 134.49642 * 359.97438 * 9 7 3 27 27 H 1.09001 * 109.47140 * 300.00350 * 1 2 3 28 28 H 1.09009 * 109.46648 * 59.99767 * 1 2 3 29 29 H 1.08997 * 109.47493 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47140 * 239.99650 * 2 1 3 31 31 H 1.09005 * 109.47351 * 120.00211 * 2 1 3 32 32 H 1.09003 * 109.47234 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47614 * 300.00304 * 6 5 3 34 34 H 1.09003 * 109.46680 * 60.00489 * 6 5 3 35 35 H 1.09000 * 113.77328 * 41.05587 * 10 9 7 36 36 H 1.09001 * 113.76777 * 269.65985 * 10 9 7 37 37 H 1.08995 * 113.74302 * 269.15000 * 11 10 9 38 38 H 1.08995 * 109.46794 * 294.99903 * 12 11 10 39 39 H 1.09000 * 109.47314 * 55.00037 * 12 11 10 40 40 H 0.96998 * 120.00310 * 359.97438 * 13 12 11 41 41 H 1.08998 * 109.47296 * 300.00322 * 16 14 13 42 42 H 1.09000 * 109.46862 * 60.00188 * 16 14 13 43 43 H 0.96994 * 120.00189 * 180.02562 * 21 20 18 44 44 H 1.09003 * 113.76916 * 90.33827 * 26 9 7 45 45 H 1.09004 * 113.76688 * 318.94990 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 16 1.5602 2.2535 1.5500 6 6 2.1080 3.9649 1.3017 7 6 3.5420 1.4441 -0.1238 8 8 4.1884 0.5204 0.3231 9 7 4.1669 2.4723 -0.7312 10 6 5.5762 2.7992 -1.0228 11 6 5.0286 3.6611 -2.1748 12 6 5.7281 5.0144 -2.3179 13 7 5.2201 5.7033 -3.5068 14 6 5.6951 6.9214 -3.8344 15 8 6.5434 7.4469 -3.1449 16 6 5.1730 7.6298 -5.0577 17 16 6.0003 9.2307 -5.2268 18 6 5.2216 9.8243 -6.6918 19 1 4.4763 9.2215 -7.1893 20 6 5.5661 11.0665 -7.2064 21 7 6.4741 11.8014 -6.5997 22 14 4.7411 11.6954 -8.7598 23 1 3.7637 10.6876 -9.2440 24 1 4.0342 12.9676 -8.4646 25 1 5.7688 11.9313 -9.8053 26 6 3.7168 3.7233 -1.3716 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8666 4.5555 2.1854 33 1 3.1852 3.9813 1.1363 34 1 1.6007 4.3864 0.4338 35 1 6.1657 1.9448 -1.3552 36 1 6.0652 3.3751 -0.2372 37 1 4.9414 3.1259 -3.1203 38 1 5.5300 5.6209 -1.4341 39 1 6.8022 4.8594 -2.4189 40 1 4.5420 5.2828 -4.0584 41 1 5.3718 7.0233 -5.9413 42 1 4.0987 7.7843 -4.9573 43 1 6.7146 12.6696 -6.9591 44 1 3.6597 4.5708 -0.6884 45 1 2.8216 3.6068 -1.9825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688649781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:46:57 Heat of formation + Delta-G solvation = -45.299028 kcal Electronic energy + Delta-G solvation = -24972.372525 eV Core-core repulsion = 21243.517976 eV Total energy + Delta-G solvation = -3728.854549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01173 -39.30275 -38.40499 -34.96653 -34.61721 -32.47680 -31.43375 -29.90941 -29.24087 -28.11124 -26.72436 -25.77486 -25.33961 -22.40353 -21.30034 -20.46115 -19.60012 -17.99078 -17.71350 -17.35043 -16.73456 -16.45696 -16.30402 -15.68870 -15.41755 -15.20207 -14.84963 -14.42728 -14.23712 -14.16856 -13.98516 -13.78745 -13.53740 -13.42088 -13.17516 -13.06457 -12.74106 -12.62200 -12.47982 -12.26667 -11.90717 -11.80049 -11.70567 -11.48898 -11.34539 -11.11037 -11.07066 -10.80300 -10.66053 -10.21017 -9.85767 -9.52163 -9.25595 -9.13049 -9.02830 -8.29196 -8.19795 -6.55689 -6.26631 -3.97583 0.85874 1.75237 2.17673 2.51338 2.91692 2.99183 3.17951 3.23476 3.27796 3.52847 3.69203 3.84208 4.07530 4.15508 4.27357 4.46016 4.48043 4.61876 4.64538 4.69909 4.79087 4.81430 4.87675 4.94258 5.06912 5.08809 5.11768 5.14111 5.23339 5.29137 5.37033 5.47950 5.51534 5.59747 5.64097 5.76359 5.81547 5.83926 6.06422 6.45716 7.09530 7.54715 7.56920 7.61157 8.30487 8.49809 9.18971 10.80821 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.001747 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.126144 B =16019.931813 C =16488.192275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.077 4.077 4 H 0.105 0.895 5 S -0.204 6.204 6 C -0.139 4.139 7 C 0.541 3.459 8 O -0.522 6.522 9 N -0.646 5.646 10 C 0.119 3.881 11 C -0.132 4.132 12 C 0.130 3.870 13 N -0.740 5.740 14 C 0.532 3.468 15 O -0.516 6.516 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.095 3.905 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.095 0.905 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.405 -22.099 12.416 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.131 4.131 3 C -0.209 4.209 4 H 0.123 0.877 5 S 0.023 5.977 6 C -0.308 4.308 7 C 0.328 3.672 8 O -0.397 6.397 9 N -0.383 5.383 10 C -0.004 4.004 11 C -0.151 4.151 12 C 0.006 3.994 13 N -0.395 5.395 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.027 4.027 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.113 0.887 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.158 -22.152 14.831 28.528 hybrid contribution -1.244 0.334 -3.119 3.375 sum -11.402 -21.818 11.712 27.261 Atomic orbital electron populations 1.21854 0.94181 1.02359 1.02793 1.21214 0.96621 0.90994 1.04240 1.23402 0.94653 1.02877 0.99936 0.87713 1.87069 1.78899 1.07956 1.23801 1.23720 1.04618 0.95628 1.06794 1.20096 0.89200 0.81419 0.76531 1.90728 1.67039 1.35090 1.46890 1.50046 1.09778 1.20120 1.58374 1.23160 0.84141 0.97900 0.95188 1.23414 0.95606 0.96721 0.99372 1.21206 0.98837 0.90295 0.89100 1.45979 1.44925 1.19582 1.28991 1.20330 0.81429 0.80286 0.86140 1.90717 1.30862 1.65211 1.52169 1.23529 1.04820 1.04666 0.97420 1.85419 1.53283 1.09316 1.35388 1.22899 1.27378 1.06153 1.11957 0.90860 1.25001 0.95076 0.95663 0.97884 1.70021 1.29614 1.11538 1.39049 0.86113 0.79087 0.78731 0.81536 1.19620 1.20553 1.20548 1.23610 0.98730 0.86205 0.94182 0.91333 0.92476 0.91948 0.90287 0.89852 0.87420 0.90122 0.89905 0.89290 0.88969 0.86981 0.91014 0.90664 0.76770 0.89187 0.89207 0.92194 0.88740 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.74 37.16 0.36 -0.51 16 2 C -0.09 -0.67 4.91 -26.73 -0.13 -0.80 16 3 C -0.08 -0.58 2.46 -27.89 -0.07 -0.65 16 4 H 0.10 0.61 7.65 -51.93 -0.40 0.21 16 5 S -0.20 -1.63 20.59 -107.50 -2.21 -3.84 16 6 C -0.14 -0.82 9.24 101.05 0.93 0.12 16 7 C 0.54 5.31 6.78 -10.99 -0.07 5.24 16 8 O -0.52 -7.16 17.01 5.56 0.09 -7.06 16 9 N -0.65 -4.85 3.17 -178.36 -0.57 -5.42 16 10 C 0.12 0.78 8.40 -2.97 -0.02 0.76 16 11 C -0.13 -0.73 3.94 -89.69 -0.35 -1.08 16 12 C 0.13 1.10 5.53 -4.04 -0.02 1.08 16 13 N -0.74 -7.86 5.56 -60.29 -0.33 -8.20 16 14 C 0.53 8.89 7.85 -10.99 -0.09 8.81 16 15 O -0.52 -10.86 15.86 5.55 0.09 -10.77 16 16 C -0.15 -2.87 6.16 36.00 0.22 -2.64 16 17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 18 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 21 N -0.87 -25.63 13.22 55.49 0.73 -24.89 16 22 Si 0.92 20.91 29.55 -169.99 -5.02 15.88 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 C 0.10 0.48 6.63 -2.98 -0.02 0.46 16 27 H 0.07 0.43 7.13 -51.93 -0.37 0.06 16 28 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.73 8.02 -51.93 -0.42 0.32 16 32 H 0.11 0.56 8.14 -51.92 -0.42 0.13 16 33 H 0.08 0.51 6.01 -51.92 -0.31 0.20 16 34 H 0.08 0.38 8.03 -51.92 -0.42 -0.04 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 37 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.40 3.03 8.47 -40.82 -0.35 2.69 16 41 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 42 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.09 0.45 6.31 -51.93 -0.33 0.12 16 45 H 0.09 0.32 7.92 -51.93 -0.41 -0.09 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -36.36 398.37 -9.67 -46.03 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.17 Total: -2.13 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 0.93 Total: -1.81 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: -0.17 Total: -38.50 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.18 Total: -17.84 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -4.43 Total: -7.64 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.36 -9.67 -46.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688649781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.730 kcal (2) G-P(sol) polarization free energy of solvation -36.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds