Wall clock time and date at job start Sat Apr 11 2020 07:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47610 * 2 1 4 4 H 1.08996 * 109.47245 * 305.00144 * 3 2 1 5 5 S 1.81402 * 109.47072 * 64.99641 * 3 2 1 6 6 C 1.81399 * 103.00050 * 184.99960 * 5 3 2 7 7 C 1.50699 * 109.47265 * 185.00071 * 3 2 1 8 8 O 1.21282 * 120.00049 * 329.99450 * 7 3 2 9 9 N 1.34775 * 119.99946 * 150.00352 * 7 3 2 10 10 C 1.47585 * 134.49073 * 179.97438 * 9 7 3 11 11 C 1.53947 * 86.11441 * 155.35639 * 10 9 7 12 12 C 1.53006 * 113.73862 * 137.95352 * 11 10 9 13 13 N 1.46498 * 109.46726 * 174.99929 * 12 11 10 14 14 C 1.34779 * 120.00066 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99486 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00253 * 179.97438 * 14 13 12 17 17 S 1.80999 * 109.46942 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99912 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99871 * 359.97438 * 18 17 16 20 20 C 1.38800 * 120.00210 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00060 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00322 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47022 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47271 * 119.99484 * 22 20 18 25 25 H 1.48490 * 109.47417 * 239.99994 * 22 20 18 26 26 C 1.47577 * 134.49642 * 359.97438 * 9 7 3 27 27 H 1.09001 * 109.47140 * 300.00350 * 1 2 3 28 28 H 1.09009 * 109.46648 * 59.99767 * 1 2 3 29 29 H 1.08997 * 109.47493 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47140 * 239.99650 * 2 1 3 31 31 H 1.09005 * 109.47351 * 120.00211 * 2 1 3 32 32 H 1.09003 * 109.47234 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.47614 * 300.00304 * 6 5 3 34 34 H 1.09003 * 109.46680 * 60.00489 * 6 5 3 35 35 H 1.09000 * 113.77328 * 41.05587 * 10 9 7 36 36 H 1.09001 * 113.76777 * 269.65985 * 10 9 7 37 37 H 1.08995 * 113.74302 * 269.15000 * 11 10 9 38 38 H 1.08995 * 109.46794 * 294.99903 * 12 11 10 39 39 H 1.09000 * 109.47314 * 55.00037 * 12 11 10 40 40 H 0.96998 * 120.00310 * 359.97438 * 13 12 11 41 41 H 1.08998 * 109.47296 * 300.00322 * 16 14 13 42 42 H 1.09000 * 109.46862 * 60.00188 * 16 14 13 43 43 H 0.96994 * 120.00189 * 180.02562 * 21 20 18 44 44 H 1.09003 * 113.76916 * 90.33827 * 26 9 7 45 45 H 1.09004 * 113.76688 * 318.94990 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 16 1.5602 2.2535 1.5500 6 6 2.1080 3.9649 1.3017 7 6 3.5420 1.4441 -0.1238 8 8 4.1884 0.5204 0.3231 9 7 4.1669 2.4723 -0.7312 10 6 5.5762 2.7992 -1.0228 11 6 5.0286 3.6611 -2.1748 12 6 5.7281 5.0144 -2.3179 13 7 5.2201 5.7033 -3.5068 14 6 5.6951 6.9214 -3.8344 15 8 6.5434 7.4469 -3.1449 16 6 5.1730 7.6298 -5.0577 17 16 6.0003 9.2307 -5.2268 18 6 5.2216 9.8243 -6.6918 19 1 4.4763 9.2215 -7.1893 20 6 5.5661 11.0665 -7.2064 21 7 6.4741 11.8014 -6.5997 22 14 4.7411 11.6954 -8.7598 23 1 3.7637 10.6876 -9.2440 24 1 4.0342 12.9676 -8.4646 25 1 5.7688 11.9313 -9.8053 26 6 3.7168 3.7233 -1.3716 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.8666 4.5555 2.1854 33 1 3.1852 3.9813 1.1363 34 1 1.6007 4.3864 0.4338 35 1 6.1657 1.9448 -1.3552 36 1 6.0652 3.3751 -0.2372 37 1 4.9414 3.1259 -3.1203 38 1 5.5300 5.6209 -1.4341 39 1 6.8022 4.8594 -2.4189 40 1 4.5420 5.2828 -4.0584 41 1 5.3718 7.0233 -5.9413 42 1 4.0987 7.7843 -4.9573 43 1 6.7146 12.6696 -6.9591 44 1 3.6597 4.5708 -0.6884 45 1 2.8216 3.6068 -1.9825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688649781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:46:55 Heat of formation + Delta-G solvation = -70.408031 kcal Electronic energy + Delta-G solvation = -24973.461333 eV Core-core repulsion = 21243.517976 eV Total energy + Delta-G solvation = -3729.943357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.65301 -40.48335 -39.21157 -35.68695 -35.55686 -34.56333 -32.31214 -30.87250 -29.94567 -28.78024 -27.66891 -27.21210 -26.33128 -22.96342 -21.99807 -21.61922 -20.22377 -19.78299 -18.36879 -18.05878 -17.65451 -17.57364 -17.10118 -16.86268 -16.55289 -16.36864 -16.05877 -15.71219 -15.21098 -14.86261 -14.64131 -14.60062 -14.47547 -14.27954 -14.18479 -13.96720 -13.55707 -13.49350 -13.17590 -13.13481 -12.98921 -12.89684 -12.81729 -12.58260 -12.38927 -12.21562 -12.02001 -11.92730 -11.68439 -11.30359 -11.14262 -10.96585 -10.81472 -10.23184 -10.06959 -9.87750 -8.80111 -8.63522 -8.33116 -6.10233 0.27429 1.20415 1.29816 1.42612 1.49380 1.57541 1.62208 1.67226 1.86640 2.26863 2.32252 3.01387 3.09029 3.23294 3.37086 3.53280 3.73964 3.89691 3.95209 4.07943 4.15999 4.20488 4.24618 4.31037 4.33141 4.36294 4.44537 4.46565 4.56569 4.57311 4.64015 4.72014 4.79460 4.80897 4.84334 5.05184 5.12912 5.16969 5.38034 5.44439 5.47489 6.22000 6.47378 6.56532 6.91491 7.08878 7.30660 8.76126 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.001747 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.126144 B =16019.931813 C =16488.192275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.067 4.067 4 H 0.129 0.871 5 S -0.241 6.241 6 C -0.131 4.131 7 C 0.536 3.464 8 O -0.572 6.572 9 N -0.645 5.645 10 C 0.110 3.890 11 C -0.110 4.110 12 C 0.132 3.868 13 N -0.709 5.709 14 C 0.534 3.466 15 O -0.567 6.567 16 C -0.130 4.130 17 S -0.155 6.155 18 C -0.543 4.543 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.255 1.255 24 H -0.275 1.275 25 H -0.276 1.276 26 C 0.096 3.904 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.418 0.582 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.270 0.730 44 H 0.103 0.897 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.772 -22.803 10.822 28.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 C -0.198 4.198 4 H 0.147 0.853 5 S -0.014 6.014 6 C -0.299 4.299 7 C 0.323 3.677 8 O -0.452 6.452 9 N -0.380 5.380 10 C -0.012 4.012 11 C -0.130 4.130 12 C 0.007 3.993 13 N -0.364 5.364 14 C 0.320 3.680 15 O -0.445 6.445 16 C -0.281 4.281 17 S 0.072 5.928 18 C -0.691 4.691 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.819 3.181 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.202 1.202 26 C -0.025 4.025 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.132 0.868 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.256 0.744 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.570 -22.886 13.220 29.267 hybrid contribution -0.486 0.455 -2.542 2.628 sum -13.056 -22.431 10.677 28.064 Atomic orbital electron populations 1.21803 0.92768 1.02889 1.03047 1.21196 0.97745 0.90885 1.03192 1.23386 0.93104 1.03136 1.00218 0.85293 1.87245 1.78911 1.10173 1.25101 1.23766 1.04387 0.93784 1.07994 1.20501 0.90038 0.81169 0.75956 1.90702 1.68180 1.37106 1.49185 1.50113 1.10355 1.20254 1.57255 1.23283 0.84046 0.98053 0.95842 1.23230 0.95324 0.94632 0.99785 1.21299 0.98736 0.91422 0.87810 1.45657 1.44027 1.17368 1.29330 1.20011 0.81054 0.81694 0.85221 1.90712 1.33312 1.66916 1.53573 1.23379 1.05008 1.00290 0.99455 1.85606 1.55831 1.15400 1.35985 1.23241 1.27317 1.06574 1.11983 0.89795 1.26115 0.95642 0.95936 1.01579 1.70186 1.31450 1.12071 1.41114 0.84925 0.78131 0.78285 0.76734 1.17886 1.20071 1.20165 1.23835 0.99358 0.85189 0.94152 0.91995 0.91172 0.91357 0.90148 0.92148 0.86811 0.90554 0.87995 0.89675 0.88604 0.85322 0.91187 0.91551 0.74408 0.87235 0.86942 0.92078 0.87924 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.74 71.98 0.70 -0.76 16 2 C -0.09 -1.27 4.91 30.59 0.15 -1.12 16 3 C -0.07 -0.91 2.46 29.85 0.07 -0.84 16 4 H 0.13 1.08 7.65 -2.39 -0.02 1.06 16 5 S -0.24 -3.60 20.59 -56.49 -1.16 -4.76 16 6 C -0.13 -1.25 9.24 113.37 1.05 -0.20 16 7 C 0.54 9.98 6.78 87.66 0.59 10.57 16 8 O -0.57 -15.94 17.01 -3.04 -0.05 -15.99 16 9 N -0.64 -8.30 3.17 -836.60 -2.66 -10.96 16 10 C 0.11 1.26 8.40 86.48 0.73 1.99 16 11 C -0.11 -0.85 3.94 -10.13 -0.04 -0.89 16 12 C 0.13 1.89 5.53 86.38 0.48 2.37 16 13 N -0.71 -12.80 5.56 -463.05 -2.57 -15.38 16 14 C 0.53 16.97 7.85 87.66 0.69 17.65 16 15 O -0.57 -23.87 15.86 -3.05 -0.05 -23.92 16 16 C -0.13 -4.61 6.16 71.24 0.44 -4.17 16 17 S -0.16 -8.23 20.57 -56.49 -1.16 -9.39 16 18 C -0.54 -29.87 9.50 67.95 0.65 -29.22 16 19 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 20 C 0.01 0.66 5.49 84.86 0.47 1.13 16 21 N -0.91 -54.83 13.22 21.65 0.29 -54.55 16 22 Si 1.00 42.34 29.55 68.60 2.03 44.36 16 23 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 24 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 25 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 26 C 0.10 0.62 6.63 86.48 0.57 1.19 16 27 H 0.06 0.71 7.13 -2.39 -0.02 0.69 16 28 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.11 8.02 -2.38 -0.02 1.09 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 0.80 6.01 -2.39 -0.01 0.79 16 34 H 0.10 0.58 8.03 -2.39 -0.02 0.56 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.04 8.10 -2.39 -0.02 1.02 16 37 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.07 1.11 7.84 -2.39 -0.02 1.09 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.42 4.44 8.47 -92.71 -0.79 3.65 16 41 H 0.11 3.46 8.14 -2.40 -0.02 3.44 16 42 H 0.11 3.48 8.14 -2.39 -0.02 3.47 16 43 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 44 H 0.10 0.58 6.31 -2.39 -0.02 0.56 16 45 H 0.11 0.24 7.92 -2.39 -0.02 0.23 16 Total: -1.00 -82.97 398.37 1.41 -81.56 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.21 Total: 11.34 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 6.54 Total: -2.31 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -4.94 Total: -80.88 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -0.10 Total: -39.92 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: -11.83 SS G_CDS: -2.33 Total: -14.16 kcal Total: -82.97 1.41 -81.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688649781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.153 kcal (2) G-P(sol) polarization free energy of solvation -82.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds