Wall clock time and date at job start Sat Apr 11 2020 07:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81407 * 103.00022 * 2 1 4 4 C 1.50691 * 109.47080 * 179.97438 * 3 2 1 5 5 O 1.21284 * 120.00189 * 0.02562 * 4 3 2 6 6 N 1.34784 * 120.00160 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00279 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47030 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.47076 * 300.00020 * 8 7 6 10 10 N 1.46494 * 109.46969 * 59.99927 * 8 7 6 11 11 C 1.34772 * 120.00318 * 63.95184 * 10 8 7 12 12 O 1.21290 * 119.99870 * 5.18818 * 11 10 8 13 13 C 1.50698 * 120.00296 * 185.19000 * 11 10 8 14 14 S 1.81001 * 109.47162 * 179.97438 * 13 11 10 15 15 C 1.76199 * 100.00092 * 179.97438 * 14 13 11 16 16 H 1.07994 * 119.99801 * 0.02562 * 15 14 13 17 17 C 1.38798 * 120.00152 * 179.97438 * 15 14 13 18 18 N 1.31634 * 119.99981 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00084 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46708 * 90.00419 * 19 17 15 21 21 H 1.48492 * 109.46980 * 210.00089 * 19 17 15 22 22 H 1.48498 * 109.47113 * 330.00725 * 19 17 15 23 23 C 1.52998 * 109.46747 * 180.02562 * 8 7 6 24 24 C 1.53001 * 117.51697 * 108.45111 * 23 8 7 25 25 C 1.53005 * 117.49462 * 177.07971 * 23 8 7 26 26 H 1.09002 * 109.47094 * 299.99558 * 1 2 3 27 27 H 1.09001 * 109.47030 * 59.99460 * 1 2 3 28 28 H 1.09002 * 109.46918 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46671 * 59.99993 * 3 2 1 30 30 H 1.08994 * 109.46887 * 300.00321 * 3 2 1 31 31 H 0.96996 * 119.99286 * 0.02562 * 6 4 3 32 32 H 1.09004 * 109.46802 * 60.00088 * 7 6 4 33 33 H 1.08993 * 109.47119 * 300.00281 * 7 6 4 34 34 H 1.09003 * 109.46706 * 300.00391 * 9 8 7 35 35 H 1.09000 * 109.47099 * 59.99667 * 9 8 7 36 36 H 1.08993 * 109.46980 * 180.02562 * 9 8 7 37 37 H 0.97001 * 119.99703 * 243.94166 * 10 8 7 38 38 H 1.09002 * 109.46756 * 299.99546 * 13 11 10 39 39 H 1.08998 * 109.47335 * 59.99839 * 13 11 10 40 40 H 0.97001 * 120.00200 * 179.97438 * 18 17 15 41 41 H 1.08999 * 115.55380 * 322.74422 * 23 8 7 42 42 H 1.09002 * 117.50163 * 214.96480 * 24 23 8 43 43 H 1.08997 * 117.50077 * 359.97438 * 24 23 8 44 44 H 1.08998 * 117.49808 * 359.97048 * 25 23 8 45 45 H 1.08998 * 117.49901 * 144.97755 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7194 1.9374 0.0006 5 8 4.4404 0.9621 0.0006 6 7 4.2575 3.1732 0.0013 7 6 5.7132 3.3383 0.0013 8 6 6.0573 4.8291 0.0027 9 6 5.4691 5.4894 -1.2459 10 7 5.4943 5.4590 1.1995 11 6 5.9283 5.0923 2.4216 12 8 6.8494 4.3105 2.5287 13 6 5.2691 5.6535 3.6551 14 16 6.0702 4.9744 5.1293 15 6 5.1294 5.7757 6.3853 16 1 4.3325 6.4523 6.1143 17 6 5.4119 5.5367 7.7230 18 7 6.3830 4.7117 8.0534 19 14 4.4151 6.3867 9.0546 20 1 3.2434 5.5458 9.4086 21 1 5.2632 6.5853 10.2572 22 1 3.9460 7.7047 8.5565 23 6 7.5776 5.0014 0.0021 24 6 8.2309 5.5092 -1.2848 25 6 8.1267 6.4279 -0.0658 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8031 2.2371 0.8900 30 1 1.8031 2.2371 -0.8899 31 1 3.6809 3.9531 0.0017 32 1 6.1321 2.8691 -0.8890 33 1 6.1321 2.8682 0.8910 34 1 5.8880 5.0206 -2.1363 35 1 4.3861 5.3665 -1.2459 36 1 5.7147 6.5514 -1.2451 37 1 4.8093 6.1402 1.1123 38 1 5.3653 6.7392 3.6564 39 1 4.2134 5.3822 3.6582 40 1 6.5807 4.5448 8.9883 41 1 8.1332 4.2761 0.5964 42 1 9.2164 5.1178 -1.5373 43 1 7.5777 5.7201 -2.1315 44 1 7.4049 7.2435 -0.1105 45 1 9.0434 6.6410 0.4840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688804169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:15 Heat of formation + Delta-G solvation = -70.838082 kcal Electronic energy + Delta-G solvation = -26072.895097 eV Core-core repulsion = 22342.933092 eV Total energy + Delta-G solvation = -3729.962006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66368 -40.41282 -38.81678 -36.30706 -34.73190 -34.57985 -32.45334 -31.06995 -29.88900 -29.56519 -27.74063 -27.57716 -24.23195 -23.23967 -22.23408 -21.67566 -20.13696 -19.84359 -18.56616 -17.86702 -17.74935 -17.29277 -16.88458 -16.80220 -16.68643 -16.28751 -16.18317 -15.72529 -15.23677 -14.83300 -14.78440 -14.62247 -14.52547 -14.43693 -13.99533 -13.71849 -13.47411 -13.31553 -13.19717 -13.16349 -13.15011 -12.89782 -12.59880 -12.55136 -12.17309 -12.01399 -11.72835 -11.42366 -11.26927 -11.14659 -11.03107 -10.93001 -10.61415 -10.24879 -10.18409 -10.09871 -8.72013 -8.65668 -8.34793 -6.12383 0.49217 1.27160 1.41508 1.46997 1.49904 1.56914 1.63674 1.70033 2.06564 2.25291 2.29744 2.99458 3.00855 3.33313 3.50517 3.64432 3.79973 3.85012 4.05004 4.06233 4.14471 4.22754 4.24324 4.33195 4.37957 4.38468 4.44347 4.51046 4.55599 4.70935 4.80722 4.90960 4.92338 4.97476 5.04805 5.22454 5.27728 5.29008 5.38299 5.40973 5.55708 6.19104 6.39882 6.60509 7.06519 7.14023 7.36035 8.74285 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.007360 B = 0.003388 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3803.333398 B = 8263.509451 C =11297.218415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.279 6.279 3 C -0.106 4.106 4 C 0.519 3.481 5 O -0.572 6.572 6 N -0.702 5.702 7 C 0.121 3.879 8 C 0.210 3.790 9 C -0.154 4.154 10 N -0.705 5.705 11 C 0.538 3.462 12 O -0.551 6.551 13 C -0.129 4.129 14 S -0.155 6.155 15 C -0.544 4.544 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.913 5.913 19 Si 0.998 3.002 20 H -0.268 1.268 21 H -0.279 1.279 22 H -0.255 1.255 23 C -0.175 4.175 24 C -0.156 4.156 25 C -0.168 4.168 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.149 0.851 31 H 0.416 0.584 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.418 0.582 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.270 0.730 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.130 0.870 44 H 0.111 0.889 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.746 5.122 -25.356 28.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.055 6.055 3 C -0.257 4.257 4 C 0.305 3.695 5 O -0.451 6.451 6 N -0.355 5.355 7 C -0.005 4.005 8 C 0.123 3.877 9 C -0.211 4.211 10 N -0.360 5.360 11 C 0.324 3.676 12 O -0.428 6.428 13 C -0.280 4.280 14 S 0.072 5.928 15 C -0.692 4.692 16 H 0.101 0.899 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.819 3.181 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.179 1.179 23 C -0.195 4.195 24 C -0.193 4.193 25 C -0.205 4.205 26 H 0.106 0.894 27 H 0.116 0.884 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.167 0.833 31 H 0.254 0.746 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.256 0.744 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.148 0.852 44 H 0.129 0.871 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.959 2.194 -25.066 27.061 hybrid contribution -2.124 2.354 1.448 3.486 sum -12.083 4.548 -23.618 26.916 Atomic orbital electron populations 1.23540 0.91109 1.07681 1.06361 1.87987 1.09853 1.09361 1.98281 1.23445 0.94815 0.97637 1.09790 1.20306 0.90315 0.83215 0.75637 1.90762 1.63596 1.40291 1.50455 1.45590 1.07501 1.07700 1.74733 1.21558 0.80469 0.96849 1.01610 1.19929 0.91435 0.90148 0.86153 1.22250 1.02295 1.02158 0.94445 1.45873 1.43425 1.43265 1.03465 1.19947 0.82371 0.80501 0.84790 1.90702 1.29442 1.35760 1.86858 1.23377 1.04005 1.04824 0.95810 1.85676 1.48440 1.61933 0.96767 1.23202 1.21281 1.31634 0.93115 0.89850 1.26138 0.96516 0.95793 1.00809 1.70196 1.30430 1.35431 1.18883 0.84966 0.77719 0.78828 0.76552 1.19366 1.20479 1.17922 1.22366 0.94591 0.99229 1.03346 1.23292 1.02464 1.01881 0.91661 1.22860 1.02612 0.92925 1.02139 0.89394 0.88411 0.87196 0.85209 0.83296 0.74574 0.90438 0.94548 0.88949 0.89527 0.89415 0.74403 0.87389 0.87517 0.92100 0.90711 0.88942 0.85237 0.87117 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 10.76 113.37 1.22 -0.13 16 2 S -0.28 -6.25 21.52 -56.49 -1.22 -7.46 16 3 C -0.11 -1.72 6.42 71.23 0.46 -1.26 16 4 C 0.52 12.93 7.85 87.65 0.69 13.62 16 5 O -0.57 -21.01 15.86 -3.04 -0.05 -21.06 16 6 N -0.70 -13.40 5.13 -463.06 -2.37 -15.77 16 7 C 0.12 2.96 4.44 86.38 0.38 3.35 16 8 C 0.21 3.84 0.54 3.61 0.00 3.84 16 9 C -0.15 -1.20 7.04 71.98 0.51 -0.69 16 10 N -0.70 -14.27 4.71 -422.93 -1.99 -16.26 16 11 C 0.54 18.26 7.26 87.66 0.64 18.90 16 12 O -0.55 -24.40 12.69 -3.06 -0.04 -24.44 16 13 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 14 S -0.16 -8.58 20.57 -56.49 -1.16 -9.74 16 15 C -0.54 -30.87 9.50 67.95 0.65 -30.23 16 16 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 17 C 0.01 0.68 5.49 84.86 0.47 1.15 16 18 N -0.91 -56.64 13.22 21.65 0.29 -56.35 16 19 Si 1.00 43.44 29.55 68.60 2.03 45.47 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 23 C -0.18 -4.05 4.05 -10.79 -0.04 -4.10 16 24 C -0.16 -2.43 9.61 30.60 0.29 -2.14 16 25 C -0.17 -3.30 9.81 30.60 0.30 -3.00 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.42 4.47 7.15 -92.71 -0.66 3.81 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.33 6.64 -2.39 -0.02 1.31 16 34 H 0.09 0.61 6.83 -2.39 -0.02 0.59 16 35 H 0.09 0.29 6.86 -2.39 -0.02 0.28 16 36 H 0.09 0.47 7.01 -2.39 -0.02 0.45 16 37 H 0.42 5.00 8.48 -92.71 -0.79 4.22 16 38 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 39 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.07 2.46 7.18 -2.39 -0.02 2.45 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.13 1.22 5.87 -2.39 -0.01 1.21 16 44 H 0.11 1.72 7.42 -2.39 -0.02 1.70 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -90.36 394.49 1.05 -89.31 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.43 Total: 21.40 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 5.99 Total: -5.10 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -4.08 Total: -88.38 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.09 Total: -45.50 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: -14.83 SS G_CDS: -2.38 Total: -17.20 kcal Total: -90.36 1.05 -89.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688804169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.476 kcal (2) G-P(sol) polarization free energy of solvation -90.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds