Wall clock time and date at job start Sat Apr 11 2020 07:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81395 * 103.00250 * 2 1 4 4 C 1.50701 * 109.47085 * 180.02562 * 3 2 1 5 5 O 1.21270 * 120.00158 * 359.97438 * 4 3 2 6 6 N 1.34780 * 119.99775 * 179.97438 * 4 3 2 7 7 C 1.46494 * 119.99997 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47223 * 179.97438 * 7 6 4 9 9 C 1.53007 * 109.47159 * 180.02562 * 8 7 6 10 10 N 1.46497 * 109.47084 * 59.99956 * 8 7 6 11 11 C 1.34777 * 120.00252 * 58.24140 * 10 8 7 12 12 O 1.21284 * 119.99999 * 5.12159 * 11 10 8 13 13 C 1.50699 * 120.00297 * 185.12397 * 11 10 8 14 14 S 1.81000 * 109.47203 * 179.97438 * 13 11 10 15 15 C 1.76200 * 100.00055 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99778 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99956 * 180.02562 * 15 14 13 18 18 N 1.31634 * 119.99423 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00005 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46920 * 90.00149 * 19 17 15 21 21 H 1.48501 * 109.46900 * 209.99804 * 19 17 15 22 22 H 1.48492 * 109.47446 * 329.99985 * 19 17 15 23 23 C 1.53001 * 109.47195 * 299.99650 * 8 7 6 24 24 C 1.53000 * 117.50100 * 252.09378 * 23 8 7 25 25 C 1.52996 * 117.50037 * 183.43076 * 23 8 7 26 26 H 1.08995 * 109.47283 * 300.00878 * 1 2 3 27 27 H 1.09006 * 109.46732 * 60.00637 * 1 2 3 28 28 H 1.09004 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47415 * 59.99443 * 3 2 1 30 30 H 1.09004 * 109.47010 * 299.99549 * 3 2 1 31 31 H 0.96999 * 120.00156 * 359.97438 * 6 4 3 32 32 H 1.08997 * 109.47174 * 59.99742 * 7 6 4 33 33 H 1.09004 * 109.46881 * 300.00074 * 7 6 4 34 34 H 1.09001 * 109.46988 * 180.02562 * 9 8 7 35 35 H 1.08997 * 109.47303 * 59.99710 * 9 8 7 36 36 H 1.09004 * 109.46816 * 300.00002 * 9 8 7 37 37 H 0.96996 * 120.00234 * 238.23630 * 10 8 7 38 38 H 1.08995 * 109.46854 * 300.00020 * 13 11 10 39 39 H 1.09000 * 109.46987 * 60.00063 * 13 11 10 40 40 H 0.97005 * 119.99541 * 179.97438 * 18 17 15 41 41 H 1.09001 * 115.54699 * 37.76364 * 23 8 7 42 42 H 1.08993 * 117.49980 * 359.97438 * 24 23 8 43 43 H 1.09000 * 117.49801 * 145.02271 * 24 23 8 44 44 H 1.09001 * 117.50213 * 214.98249 * 25 23 8 45 45 H 1.09007 * 117.49785 * 0.02562 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7196 1.9372 -0.0006 5 8 4.4404 0.9620 -0.0006 6 7 4.2576 3.1729 -0.0013 7 6 5.7132 3.3380 -0.0013 8 6 6.0574 4.8288 -0.0027 9 6 7.5778 5.0012 -0.0034 10 7 5.4943 5.4611 1.1928 11 6 5.8426 5.0180 2.4170 12 8 6.6912 4.1592 2.5324 13 6 5.1775 5.5895 3.6426 14 16 5.8547 4.7962 5.1219 15 6 4.9268 5.6284 6.3673 16 1 4.2006 6.3779 6.0894 17 6 5.1301 5.3215 7.7056 18 7 4.4372 5.9436 8.6360 19 14 6.3867 4.0257 8.1863 20 1 7.7090 4.6700 8.3900 21 1 5.9590 3.3645 9.4454 22 1 6.4910 3.0124 7.1058 23 6 5.4696 5.4868 -1.2527 24 6 6.4442 5.9062 -2.3551 25 6 5.7740 6.9688 -1.4805 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8032 2.2371 0.8899 30 1 1.8033 2.2370 -0.8901 31 1 3.6811 3.9530 -0.0017 32 1 6.1322 2.8679 -0.8910 33 1 6.1321 2.8689 0.8890 34 1 7.8230 6.0633 -0.0040 35 1 7.9964 4.5308 -0.8931 36 1 7.9970 4.5323 0.8869 37 1 4.8709 6.1988 1.1033 38 1 5.3617 6.6627 3.6888 39 1 4.1041 5.4069 3.5920 40 1 4.5789 5.7289 9.5713 41 1 4.4896 5.1213 -1.5596 42 1 7.5042 5.7137 -2.1897 43 1 6.1052 5.8170 -3.3872 44 1 4.9944 7.5783 -1.9376 45 1 6.3934 7.4749 -0.7400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688804170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:24 Heat of formation + Delta-G solvation = -69.670699 kcal Electronic energy + Delta-G solvation = -26154.253331 eV Core-core repulsion = 22424.341947 eV Total energy + Delta-G solvation = -3729.911384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.74308 -40.41600 -39.01050 -36.01902 -34.80140 -34.66735 -32.67298 -31.21012 -29.94669 -29.59072 -27.85098 -27.19867 -24.91276 -23.16381 -21.83289 -21.71284 -20.42100 -19.84587 -18.54656 -18.15816 -17.77285 -17.18062 -17.11096 -16.80010 -16.67622 -16.38433 -16.04201 -15.67750 -15.26242 -14.95993 -14.79406 -14.75498 -14.58064 -14.34191 -14.13581 -13.87563 -13.65264 -13.37024 -13.32191 -13.24654 -13.13933 -13.03062 -12.71181 -12.57132 -12.22462 -12.05302 -11.88547 -11.29125 -11.18138 -11.17305 -11.10507 -10.94373 -10.73986 -10.51518 -10.20141 -10.11663 -8.98901 -8.72416 -8.52858 -6.22243 0.48513 0.98606 1.28883 1.45465 1.49033 1.53610 1.59730 1.62592 2.03759 2.21727 2.24454 2.70654 2.85933 2.98322 3.48271 3.53792 3.68730 3.91060 4.00123 4.04068 4.10883 4.21902 4.22213 4.24788 4.37023 4.37548 4.45836 4.48014 4.51974 4.71164 4.76578 4.87545 4.91596 4.94347 5.07302 5.19080 5.27918 5.34363 5.39449 5.51348 5.69946 6.10527 6.38626 6.53572 6.93358 7.12650 7.24491 8.59491 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.007525 B = 0.003555 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3720.122736 B = 7874.318523 C =10579.932360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.275 6.275 3 C -0.108 4.108 4 C 0.521 3.479 5 O -0.570 6.570 6 N -0.703 5.703 7 C 0.117 3.883 8 C 0.210 3.790 9 C -0.166 4.166 10 N -0.703 5.703 11 C 0.538 3.462 12 O -0.549 6.549 13 C -0.111 4.111 14 S -0.179 6.179 15 C -0.526 4.526 16 H 0.064 0.936 17 C 0.049 3.951 18 N -0.916 5.916 19 Si 0.910 3.090 20 H -0.262 1.262 21 H -0.260 1.260 22 H -0.241 1.241 23 C -0.168 4.168 24 C -0.168 4.168 25 C -0.163 4.163 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.147 0.853 31 H 0.415 0.585 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.050 0.950 37 H 0.418 0.582 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.276 0.724 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.114 0.886 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 1.098 -27.677 28.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.051 6.051 3 C -0.259 4.259 4 C 0.306 3.694 5 O -0.449 6.449 6 N -0.356 5.356 7 C -0.008 4.008 8 C 0.124 3.876 9 C -0.224 4.224 10 N -0.358 5.358 11 C 0.324 3.676 12 O -0.426 6.426 13 C -0.262 4.262 14 S 0.047 5.953 15 C -0.673 4.673 16 H 0.082 0.918 17 C -0.157 4.157 18 N -0.554 5.554 19 Si 0.732 3.268 20 H -0.187 1.187 21 H -0.184 1.184 22 H -0.165 1.165 23 C -0.186 4.186 24 C -0.205 4.205 25 C -0.200 4.200 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.146 0.854 30 H 0.165 0.835 31 H 0.252 0.748 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.256 0.744 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.143 0.857 42 H 0.119 0.881 43 H 0.128 0.872 44 H 0.132 0.868 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.867 -1.842 -27.304 27.638 hybrid contribution -1.833 2.192 0.965 3.016 sum -5.700 0.349 -26.339 26.951 Atomic orbital electron populations 1.23544 0.91230 1.07696 1.06316 1.87929 1.09731 1.09165 1.98271 1.23453 0.95040 0.97758 1.09638 1.20249 0.90212 0.83228 0.75669 1.90750 1.63513 1.40183 1.50443 1.45597 1.07681 1.07630 1.74718 1.21632 0.80533 0.96506 1.02125 1.19911 0.94161 0.89669 0.83903 1.22288 0.93852 1.03080 1.03168 1.45845 1.48822 1.37874 1.03293 1.19892 0.81637 0.81520 0.84562 1.90683 1.32625 1.32681 1.86582 1.23278 1.04311 1.04568 0.93998 1.84834 1.55881 1.55276 0.99297 1.22458 1.25816 1.25822 0.93250 0.91762 1.25488 0.97189 0.97545 0.95470 1.70010 1.41456 1.42557 1.01401 0.85929 0.79922 0.80900 0.80018 1.18682 1.18444 1.16486 1.22361 1.01674 0.98946 0.95647 1.23230 0.98739 1.02574 0.96006 1.23064 1.03813 0.90219 1.02864 0.89465 0.88477 0.87126 0.85355 0.83533 0.74760 0.90587 0.93149 0.90724 0.89805 0.93084 0.74424 0.86915 0.86997 0.91408 0.85659 0.88067 0.87227 0.86755 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 10.76 113.37 1.22 -0.19 16 2 S -0.27 -6.17 21.52 -56.49 -1.22 -7.39 16 3 C -0.11 -1.80 6.42 71.24 0.46 -1.34 16 4 C 0.52 12.89 7.85 87.66 0.69 13.58 16 5 O -0.57 -20.50 15.86 -3.00 -0.05 -20.55 16 6 N -0.70 -13.44 4.98 -463.08 -2.31 -15.75 16 7 C 0.12 2.75 4.35 86.38 0.38 3.12 16 8 C 0.21 3.62 0.54 3.61 0.00 3.62 16 9 C -0.17 -3.27 7.06 71.98 0.51 -2.76 16 10 N -0.70 -13.38 4.73 -422.92 -2.00 -15.38 16 11 C 0.54 16.66 7.25 87.66 0.64 17.29 16 12 O -0.55 -21.82 12.10 -3.04 -0.04 -21.86 16 13 C -0.11 -3.89 6.16 71.24 0.44 -3.45 16 14 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 15 C -0.53 -30.18 10.04 67.95 0.68 -29.50 16 16 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 17 C 0.05 2.84 5.50 84.86 0.47 3.31 16 18 N -0.92 -55.47 13.97 21.65 0.30 -55.17 16 19 Si 0.91 45.38 27.74 68.60 1.90 47.29 16 20 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 21 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.24 -12.16 6.74 99.48 0.67 -11.48 16 23 C -0.17 -1.62 4.86 -10.79 -0.05 -1.68 16 24 C -0.17 -1.44 9.63 30.62 0.29 -1.14 16 25 C -0.16 -1.24 9.72 30.62 0.30 -0.94 16 26 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.41 4.87 7.44 -92.71 -0.69 4.18 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 1.72 6.22 -2.39 -0.01 1.70 16 34 H 0.07 1.29 7.00 -2.39 -0.02 1.27 16 35 H 0.08 1.36 6.81 -2.39 -0.02 1.34 16 36 H 0.05 1.44 6.13 -2.39 -0.01 1.42 16 37 H 0.42 5.15 8.38 -92.71 -0.78 4.38 16 38 H 0.11 3.60 8.14 -2.40 -0.02 3.58 16 39 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 40 H 0.28 15.52 8.31 -92.70 -0.77 14.75 16 41 H 0.13 0.87 7.09 -2.39 -0.02 0.86 16 42 H 0.10 0.98 5.87 -2.39 -0.01 0.96 16 43 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 45 H 0.09 0.88 7.39 -2.38 -0.02 0.87 16 Total: -1.00 -83.60 390.63 1.08 -82.52 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -0.48 Total: 16.34 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 6.01 Total: -0.09 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -4.01 Total: -86.29 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.08 Total: -42.40 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.90 Total: 47.29 kcal Atomic # 16 Polarization: -15.10 SS G_CDS: -2.26 Total: -17.36 kcal Total: -83.60 1.08 -82.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688804170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.849 kcal (2) G-P(sol) polarization free energy of solvation -83.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds