Wall clock time and date at job start Sat Apr 11 2020 07:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86795 * 120.00115 * 2 1 4 4 H 1.48500 * 109.46821 * 269.99845 * 3 2 1 5 5 H 1.48498 * 109.47401 * 29.99352 * 3 2 1 6 6 H 1.48500 * 109.47359 * 149.99814 * 3 2 1 7 7 C 1.38793 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00663 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99666 * 180.02562 * 7 2 1 10 10 C 1.81007 * 100.00025 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47114 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00301 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00210 * 179.72368 * 11 10 9 14 14 C 1.46496 * 120.00426 * 180.27056 * 13 11 10 15 15 C 1.53001 * 109.47292 * 185.54161 * 14 13 11 16 16 N 1.46502 * 115.54719 * 273.06514 * 15 14 13 17 17 C 1.34777 * 120.00004 * 294.98078 * 16 15 14 18 18 O 1.21283 * 119.99771 * 354.97760 * 17 16 15 19 19 C 1.50696 * 119.99949 * 174.98410 * 17 16 15 20 20 F 1.39902 * 110.45568 * 57.39229 * 19 17 16 21 21 C 1.54507 * 110.51212 * 179.97438 * 19 17 16 22 22 C 1.54483 * 104.06324 * 118.64275 * 21 19 17 23 23 O 1.44424 * 104.80051 * 23.98289 * 22 21 19 24 24 C 1.44426 * 105.27528 * 319.48673 * 23 22 21 25 25 C 1.52995 * 117.49845 * 127.35993 * 15 14 13 26 26 C 1.52994 * 117.49694 * 58.73608 * 15 14 13 27 27 H 0.97002 * 119.99182 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47055 * 59.99576 * 10 9 7 29 29 H 1.09007 * 109.46632 * 299.99561 * 10 9 7 30 30 H 0.97000 * 119.99425 * 0.27477 * 13 11 10 31 31 H 1.08999 * 109.47348 * 305.54543 * 14 13 11 32 32 H 1.09001 * 109.46648 * 65.53706 * 14 13 11 33 33 H 0.96991 * 119.99855 * 114.98136 * 16 15 14 34 34 H 1.08999 * 110.51359 * 237.28939 * 21 19 17 35 35 H 1.09001 * 110.51019 * 359.97438 * 21 19 17 36 36 H 1.08997 * 110.37078 * 142.80877 * 22 21 19 37 37 H 1.08997 * 110.37357 * 265.14810 * 22 21 19 38 38 H 1.09001 * 110.37078 * 281.68004 * 24 23 22 39 39 H 1.09003 * 110.37450 * 159.34375 * 24 23 22 40 40 H 1.09004 * 117.50145 * 359.97438 * 25 15 14 41 41 H 1.09000 * 117.49980 * 145.01876 * 25 15 14 42 42 H 1.09003 * 117.49772 * 214.98102 * 26 15 14 43 43 H 1.08999 * 117.49845 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4479 2.6527 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0009 11 6 5.5729 -3.2327 0.0021 12 8 6.3440 -2.2966 0.0025 13 7 6.0456 -4.4949 0.0077 14 6 7.4905 -4.7360 0.0149 15 6 7.7579 -6.2366 -0.1191 16 7 7.7719 -6.9904 1.1371 17 6 8.7240 -6.7459 2.0592 18 8 9.6214 -5.9682 1.8126 19 6 8.6735 -7.4389 3.3964 20 9 8.6736 -8.8277 3.2277 21 6 9.8641 -7.0010 4.2784 22 6 9.1988 -6.3364 5.5041 23 8 7.8767 -6.9145 5.5649 24 6 7.4297 -6.9872 4.1935 25 6 8.7139 -6.6878 -1.2250 26 6 7.2116 -6.9433 -1.3611 27 1 -0.4849 0.8401 -0.0004 28 1 3.6439 -3.4315 -0.8893 29 1 3.6433 -3.4318 0.8908 30 1 5.4289 -5.2436 0.0070 31 1 7.9510 -4.2089 -0.8207 32 1 7.9147 -4.3735 0.9512 33 1 7.0960 -7.6654 1.3051 34 1 10.4510 -7.8668 4.5850 35 1 10.4895 -6.2836 3.7470 36 1 9.7567 -6.5689 6.4111 37 1 9.1351 -5.2575 5.3628 38 1 7.0947 -6.0080 3.8512 39 1 6.6286 -7.7195 4.0938 40 1 9.1522 -5.9158 -1.8575 41 1 9.3537 -7.5457 -1.0181 42 1 6.8629 -7.9694 -1.2438 43 1 6.6614 -6.3394 -2.0827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689570614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:47:29 Heat of formation + Delta-G solvation = -160.588933 kcal Electronic energy + Delta-G solvation = -28078.205078 eV Core-core repulsion = 23778.138008 eV Total energy + Delta-G solvation = -4300.067071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.15811 -41.60800 -40.67385 -39.83448 -38.55628 -35.31911 -34.66551 -34.23626 -32.85953 -31.36495 -30.31184 -27.99366 -27.52720 -25.27129 -24.09843 -23.58411 -21.78058 -21.71075 -20.98761 -19.89945 -19.39746 -18.25849 -17.99921 -17.67469 -17.17224 -17.12110 -17.01427 -16.64896 -16.49893 -16.27748 -15.96409 -15.66316 -15.43688 -15.31142 -14.96252 -14.91793 -14.63761 -14.37254 -13.97362 -13.69903 -13.48412 -13.41654 -13.33702 -13.00953 -12.92123 -12.67168 -12.51298 -12.49387 -12.18763 -12.03911 -11.87092 -11.59839 -11.16977 -11.14188 -11.01836 -10.91332 -10.52647 -10.31699 -10.20774 -8.99471 -8.51488 -6.21958 0.98258 1.08893 1.31171 1.46390 1.52126 1.54336 1.56663 2.07674 2.24973 2.62332 2.65948 2.75169 2.78792 2.87061 3.12181 3.32169 3.44621 3.48810 3.68427 3.79583 3.91453 3.94075 4.02027 4.22561 4.31938 4.39616 4.47290 4.48226 4.53095 4.67706 4.68814 4.70427 4.71999 4.82428 4.93787 5.13479 5.27431 5.29340 5.48184 5.71237 6.12122 6.14959 6.42606 6.83182 6.94223 7.15890 8.60807 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.002452 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.181047 B =11415.287264 C =12447.290156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.238 1.238 7 C -0.526 4.526 8 H 0.065 0.935 9 S -0.180 6.180 10 C -0.109 4.109 11 C 0.535 3.465 12 O -0.564 6.564 13 N -0.705 5.705 14 C 0.160 3.840 15 C 0.064 3.936 16 N -0.673 5.673 17 C 0.510 3.490 18 O -0.537 6.537 19 C 0.075 3.925 20 F -0.183 7.183 21 C -0.171 4.171 22 C 0.041 3.959 23 O -0.379 6.379 24 C 0.033 3.967 25 C -0.160 4.160 26 C -0.133 4.133 27 H 0.277 0.723 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.418 0.582 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.422 0.578 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.130 0.870 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.933 -22.983 4.076 30.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.162 1.162 7 C -0.673 4.673 8 H 0.083 0.917 9 S 0.046 5.954 10 C -0.260 4.260 11 C 0.320 3.680 12 O -0.442 6.442 13 N -0.359 5.359 14 C 0.035 3.965 15 C -0.023 4.023 16 N -0.325 5.325 17 C 0.294 3.706 18 O -0.413 6.413 19 C 0.053 3.947 20 F -0.163 7.163 21 C -0.209 4.209 22 C -0.035 4.035 23 O -0.297 6.297 24 C -0.045 4.045 25 C -0.198 4.198 26 C -0.171 4.171 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.255 0.745 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.260 0.740 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.141 0.859 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.152 0.848 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.149 0.851 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 20.553 -20.902 4.109 29.601 hybrid contribution -1.449 -0.816 -0.076 1.664 sum 19.104 -21.718 4.033 29.205 Atomic orbital electron populations 1.70018 1.07252 1.28980 1.49250 1.25538 0.95245 1.02181 0.92989 0.85891 0.80661 0.79787 0.80190 1.18707 1.18455 1.16193 1.22447 0.90135 0.96706 1.58049 0.91701 1.84803 1.06543 1.06413 1.97595 1.23254 0.95476 0.99498 1.07727 1.20025 0.89531 0.83224 0.75192 1.90711 1.59435 1.43968 1.50126 1.45673 1.07904 1.06893 1.75463 1.20826 0.80632 0.92858 1.02141 1.20685 1.10443 0.89827 0.81361 1.45193 1.30943 1.40241 1.16140 1.20637 0.81877 0.82491 0.85634 1.90751 1.35007 1.36831 1.78713 1.22512 1.01028 0.76984 0.94159 1.92947 1.97620 1.29322 1.96451 1.23585 0.97025 1.04294 0.96034 1.23665 0.82643 0.97831 0.99346 1.89198 1.32597 1.83558 1.24394 1.24102 0.94963 1.03688 0.81719 1.23430 0.93971 1.03723 0.98701 1.23514 0.96166 1.02769 0.94635 0.91391 0.86361 0.86684 0.74451 0.90778 0.93078 0.73968 0.87335 0.87516 0.85897 0.91260 0.89956 0.84752 0.87673 0.87729 0.85147 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.28 13.97 21.65 0.30 -54.97 16 2 C 0.05 2.66 5.50 84.85 0.47 3.13 16 3 Si 0.91 44.72 27.74 68.60 1.90 46.62 16 4 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 7 C -0.53 -30.01 10.04 67.95 0.68 -29.33 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 10 C -0.11 -3.85 6.16 71.23 0.44 -3.41 16 11 C 0.53 17.45 7.85 87.65 0.69 18.14 16 12 O -0.56 -23.87 15.85 -3.03 -0.05 -23.92 16 13 N -0.70 -14.97 5.43 -463.07 -2.52 -17.49 16 14 C 0.16 3.41 5.66 86.38 0.49 3.90 16 15 C 0.06 0.88 1.74 3.60 0.01 0.89 16 16 N -0.67 -8.12 5.44 -422.94 -2.30 -10.42 16 17 C 0.51 8.89 6.45 87.66 0.57 9.45 16 18 O -0.54 -13.20 14.48 -3.04 -0.04 -13.24 16 19 C 0.08 1.11 1.62 -10.53 -0.02 1.09 16 20 F -0.18 -2.77 16.88 44.97 0.76 -2.01 16 21 C -0.17 -2.45 6.52 31.61 0.21 -2.24 16 22 C 0.04 0.57 7.63 72.49 0.55 1.12 16 23 O -0.38 -6.72 11.65 -148.98 -1.74 -8.46 16 24 C 0.03 0.45 6.97 72.48 0.51 0.96 16 25 C -0.16 -1.93 10.10 30.59 0.31 -1.62 16 26 C -0.13 -1.04 9.89 30.59 0.30 -0.74 16 27 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.12 3.73 8.14 -2.40 -0.02 3.71 16 29 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 30 H 0.42 5.79 8.34 -92.71 -0.77 5.01 16 31 H 0.07 1.76 7.88 -2.39 -0.02 1.74 16 32 H 0.05 1.39 7.14 -2.39 -0.02 1.37 16 33 H 0.42 2.62 8.83 -92.71 -0.82 1.80 16 34 H 0.11 1.29 8.06 -2.39 -0.02 1.27 16 35 H 0.11 1.78 6.50 -2.39 -0.02 1.76 16 36 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.08 1.19 7.86 -2.39 -0.02 1.17 16 39 H 0.13 1.26 8.13 -2.39 -0.02 1.24 16 40 H 0.10 1.35 8.04 -2.38 -0.02 1.33 16 41 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -79.30 381.21 -0.10 -79.40 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -0.57 Total: 13.11 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.20 Total: 1.35 kcal Atomic # 7 Polarization: -78.37 SS G_CDS: -4.52 Total: -82.88 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.83 Total: -45.62 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.76 Total: -2.01 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.90 Total: 46.62 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -79.30 -0.10 -79.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689570614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.186 kcal (2) G-P(sol) polarization free energy of solvation -79.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds