Wall clock time and date at job start Sat Apr 11 2020 07:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86800 * 119.99933 * 2 1 4 4 H 1.48500 * 109.47461 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47321 * 299.99607 * 3 2 1 6 6 H 1.48504 * 109.47009 * 59.99642 * 3 2 1 7 7 C 1.40122 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99965 * 180.02562 * 7 2 1 9 9 C 1.46196 * 119.99964 * 0.02562 * 7 2 1 10 10 O 1.21725 * 120.00201 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99979 * 179.97438 * 9 7 2 12 12 C 1.39072 * 119.99940 * 185.27947 * 11 9 7 13 13 C 1.39270 * 119.93217 * 33.64817 * 12 11 9 14 14 C 1.37607 * 120.06707 * 180.02562 * 13 12 11 15 15 C 1.39839 * 119.93506 * 359.97438 * 14 13 12 16 16 C 1.47460 * 120.07256 * 180.02562 * 15 14 13 17 17 O 1.21510 * 119.99811 * 359.97438 * 16 15 14 18 18 O 1.34751 * 120.00259 * 180.02562 * 16 15 14 19 19 C 1.45203 * 117.00185 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.46913 * 179.97438 * 19 18 16 21 21 O 1.21284 * 120.00110 * 359.97438 * 20 19 18 22 22 N 1.34779 * 119.99830 * 180.02562 * 20 19 18 23 23 C 1.47028 * 125.64711 * 359.68551 * 22 20 19 24 24 C 1.54308 * 107.27429 * 180.97207 * 23 22 20 25 25 C 1.55156 * 102.86750 * 22.52904 * 24 23 22 26 26 C 1.47419 * 125.65175 * 180.02562 * 22 20 19 27 27 C 1.39840 * 119.85987 * 0.27712 * 15 14 13 28 28 C 1.37604 * 119.93475 * 359.46297 * 27 15 14 29 29 H 0.97000 * 119.99991 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99999 * 5.27730 * 11 9 7 31 31 H 1.07996 * 119.96850 * 359.97438 * 13 12 11 32 32 H 1.08004 * 120.03738 * 179.97438 * 14 13 12 33 33 H 1.08996 * 109.46957 * 59.99783 * 19 18 16 34 34 H 1.08998 * 109.46837 * 299.99671 * 19 18 16 35 35 H 1.09003 * 109.88013 * 300.51801 * 23 22 20 36 36 H 1.08999 * 109.87661 * 61.68198 * 23 22 20 37 37 H 1.08996 * 110.92598 * 264.11074 * 24 23 22 38 38 H 1.08998 * 110.59097 * 140.78591 * 24 23 22 39 39 H 1.08996 * 111.00847 * 206.23239 * 25 24 23 40 40 H 1.08997 * 111.00754 * 82.37479 * 25 24 23 41 41 H 1.09006 * 110.36733 * 274.67112 * 26 22 20 42 42 H 1.08998 * 110.36534 * 36.88128 * 26 22 20 43 43 H 1.08003 * 120.03174 * 179.70357 * 27 15 14 44 44 H 1.07998 * 119.96982 * 180.25321 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3465 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8815 2.3965 1.2125 7 6 2.0070 -1.2135 0.0005 8 1 3.0871 -1.2135 0.0010 9 6 1.2760 -2.4796 0.0005 10 8 0.0588 -2.4796 0.0005 11 7 1.9500 -3.6468 0.0005 12 6 1.2590 -4.8486 -0.1103 13 6 0.0988 -4.9150 -0.8778 14 6 -0.5873 -6.1026 -0.9889 15 6 -0.1183 -7.2437 -0.3307 16 6 -0.8508 -8.5181 -0.4482 17 8 -1.8635 -8.5773 -1.1171 18 8 -0.3979 -9.6167 0.1871 19 6 -1.1698 -10.8361 0.0272 20 6 -0.5156 -11.9502 0.8029 21 8 0.5015 -11.7376 1.4285 22 7 -1.0601 -13.1831 0.8006 23 6 -2.2874 -13.5764 0.0931 24 6 -2.5339 -15.0688 0.3981 25 6 -1.7516 -15.2850 1.7204 26 6 -0.5276 -14.3589 1.5127 27 6 1.0441 -7.1726 0.4435 28 6 1.7288 -5.9835 0.5464 29 1 -0.4850 0.8400 -0.0004 30 1 2.9169 -3.6486 0.0778 31 1 -0.2633 -4.0333 -1.3856 32 1 -1.4873 -6.1534 -1.5839 33 1 -1.2109 -11.1042 -1.0285 34 1 -2.1812 -10.6775 0.4015 35 1 -3.1276 -12.9797 0.4486 36 1 -2.1579 -13.4358 -0.9800 37 1 -2.1326 -15.6997 -0.3950 38 1 -3.5971 -15.2599 0.5434 39 1 -1.4417 -16.3247 1.8256 40 1 -2.3412 -14.9659 2.5799 41 1 0.2280 -14.8593 0.9069 42 1 -0.1070 -14.0621 2.4735 43 1 1.4062 -8.0511 0.9569 44 1 2.6288 -5.9289 1.1409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003429360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:53 Heat of formation + Delta-G solvation = -125.623971 kcal Electronic energy + Delta-G solvation = -28437.229249 eV Core-core repulsion = 24126.694727 eV Total energy + Delta-G solvation = -4310.534522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.75130 -40.05925 -39.12087 -37.77580 -36.97151 -36.15462 -33.65176 -32.57939 -32.40678 -30.59593 -30.10847 -29.57892 -28.30991 -26.49350 -24.16770 -23.33051 -22.40466 -21.72908 -20.91920 -19.89824 -19.84102 -18.16251 -17.68914 -17.31596 -17.02369 -16.87950 -16.46225 -16.22484 -15.58820 -15.42003 -14.80401 -14.48855 -14.15437 -14.06830 -13.93167 -13.87552 -13.48943 -13.27269 -13.09661 -12.88075 -12.73382 -12.64842 -12.57187 -12.02596 -11.92682 -11.87426 -11.77854 -11.34995 -11.33262 -11.17808 -10.87834 -10.80741 -10.68115 -10.46364 -10.37490 -10.15067 -9.50096 -9.13957 -9.00392 -8.60819 -7.89185 -7.30595 -6.44409 -4.92332 1.12344 1.88547 2.01605 2.20136 2.80857 3.00430 3.02107 3.10300 3.14650 3.86176 3.91429 3.99105 4.13378 4.30477 4.34101 4.42323 4.46999 4.67857 4.72791 4.79900 4.82320 4.99484 5.04784 5.17599 5.27902 5.29552 5.31410 5.38906 5.40143 5.52403 5.57976 5.77030 5.78848 5.92838 6.09077 6.25020 6.46471 6.61684 6.83886 6.90349 6.96338 7.17031 7.22116 7.59108 7.72060 7.86873 7.89053 8.03378 8.75449 9.04796 10.25021 10.45739 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.039475 B = 0.001624 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.138874 B =17239.434843 C =17704.060756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.537 3.463 10 O -0.554 6.554 11 N -0.693 5.693 12 C 0.238 3.762 13 C -0.148 4.148 14 C -0.027 4.027 15 C -0.189 4.189 16 C 0.520 3.480 17 O -0.520 6.520 18 O -0.332 6.332 19 C 0.055 3.945 20 C 0.532 3.468 21 O -0.512 6.512 22 N -0.621 5.621 23 C 0.092 3.908 24 C -0.131 4.131 25 C -0.135 4.135 26 C 0.107 3.893 27 C -0.032 4.032 28 C -0.196 4.196 29 H 0.273 0.727 30 H 0.397 0.603 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.133 0.867 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.487 -27.314 0.184 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.093 0.907 9 C 0.345 3.655 10 O -0.436 6.436 11 N -0.335 5.335 12 C 0.136 3.864 13 C -0.169 4.169 14 C -0.046 4.046 15 C -0.191 4.191 16 C 0.368 3.632 17 O -0.411 6.411 18 O -0.248 6.248 19 C -0.023 4.023 20 C 0.320 3.680 21 O -0.386 6.386 22 N -0.359 5.359 23 C -0.031 4.031 24 C -0.169 4.169 25 C -0.173 4.173 26 C -0.015 4.015 27 C -0.051 4.051 28 C -0.217 4.217 29 H 0.084 0.916 30 H 0.231 0.769 31 H 0.166 0.834 32 H 0.149 0.851 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.151 0.849 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.208 -26.869 0.327 27.062 hybrid contribution 0.667 0.668 0.001 0.944 sum -2.541 -26.201 0.328 26.326 Atomic orbital electron populations 1.69985 1.07206 1.27954 1.33215 1.25765 0.94741 1.00651 0.92478 0.86192 0.80442 0.81040 0.78460 1.18567 1.19907 1.19934 1.20913 0.93955 0.88834 1.53360 0.90732 1.18485 0.87569 0.82036 0.77433 1.90658 1.13582 1.85860 1.53487 1.44318 1.10102 1.04520 1.74543 1.18313 0.92154 0.86461 0.89448 1.21288 0.96795 0.98179 1.00667 1.21032 0.97984 0.90335 0.95251 1.18702 1.00109 0.90430 1.09889 1.21373 0.82725 0.83621 0.75520 1.90802 1.25198 1.85433 1.39623 1.86630 1.52739 1.17507 1.67955 1.22520 0.95489 0.82810 1.01447 1.19771 0.84652 0.81857 0.81748 1.90773 1.23659 1.81617 1.42575 1.48381 1.27329 1.08863 1.51350 1.22177 0.86998 0.96598 0.97283 1.22634 1.01618 0.94612 0.98047 1.22807 0.96374 1.00065 0.98013 1.22253 0.96422 0.85146 0.97703 1.21108 0.92245 0.97501 0.94251 1.20875 1.03734 0.92906 1.04208 0.91594 0.76863 0.83431 0.85098 0.88238 0.88220 0.90842 0.90858 0.90227 0.89659 0.89493 0.90366 0.91152 0.90057 0.84882 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.38 11.83 55.55 0.66 -20.73 16 2 C 0.09 2.24 5.50 -17.35 -0.10 2.14 16 3 Si 0.91 18.98 29.56 -169.99 -5.02 13.96 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.53 -14.10 9.54 -35.68 -0.34 -14.44 16 8 H 0.07 1.78 7.85 -52.48 -0.41 1.36 16 9 C 0.54 14.34 7.46 -13.06 -0.10 14.24 16 10 O -0.55 -16.74 12.69 5.17 0.07 -16.67 16 11 N -0.69 -14.82 5.30 -11.18 -0.06 -14.88 16 12 C 0.24 4.79 6.27 -83.81 -0.53 4.27 16 13 C -0.15 -3.08 8.62 -39.43 -0.34 -3.42 16 14 C -0.03 -0.49 9.58 -39.21 -0.38 -0.87 16 15 C -0.19 -3.26 5.88 -104.94 -0.62 -3.88 16 16 C 0.52 8.55 7.89 34.49 0.27 8.82 16 17 O -0.52 -9.13 16.13 -19.27 -0.31 -9.44 16 18 O -0.33 -4.98 8.99 -47.31 -0.43 -5.41 16 19 C 0.05 0.62 5.15 36.00 0.19 0.80 16 20 C 0.53 6.28 7.93 -10.99 -0.09 6.20 16 21 O -0.51 -8.15 16.76 -14.11 -0.24 -8.38 16 22 N -0.62 -5.17 3.33 -170.54 -0.57 -5.74 16 23 C 0.09 0.46 6.48 -3.07 -0.02 0.44 16 24 C -0.13 -0.41 6.95 -24.91 -0.17 -0.58 16 25 C -0.13 -0.50 7.08 -24.59 -0.17 -0.68 16 26 C 0.11 0.71 6.91 -2.54 -0.02 0.69 16 27 C -0.03 -0.52 9.60 -39.21 -0.38 -0.89 16 28 C -0.20 -3.30 9.94 -39.43 -0.39 -3.69 16 29 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 30 H 0.40 7.13 8.79 -40.82 -0.36 6.77 16 31 H 0.15 3.45 6.41 -52.49 -0.34 3.12 16 32 H 0.13 2.27 7.64 -52.48 -0.40 1.87 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 43 H 0.13 1.93 7.60 -52.48 -0.40 1.53 16 44 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -35.66 382.63 -9.00 -44.65 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.69 Total: 7.71 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -3.17 Total: 9.16 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.03 Total: -41.35 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.91 Total: -39.90 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.66 -9.00 -44.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003429360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.970 kcal (2) G-P(sol) polarization free energy of solvation -35.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds