Wall clock time and date at job start Sat Apr 11 2020 07:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00299 * 2 1 4 4 H 1.48499 * 109.47529 * 239.99855 * 3 2 1 5 5 H 1.48500 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47302 * 119.99565 * 3 2 1 7 7 C 1.37876 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00202 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47463 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00071 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99879 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00111 * 179.97438 * 11 10 9 14 14 O 1.45199 * 109.47010 * 179.97438 * 13 11 10 15 15 C 1.34760 * 117.00052 * 179.97438 * 14 13 11 16 16 O 1.21511 * 119.99506 * 0.02562 * 15 14 13 17 17 C 1.47456 * 120.00213 * 179.97438 * 15 14 13 18 18 C 1.39802 * 120.07747 * 180.02562 * 17 15 14 19 19 C 1.37650 * 119.92195 * 180.02562 * 18 17 15 20 20 C 1.39152 * 120.07452 * 0.02562 * 19 18 17 21 21 N 1.39415 * 119.91909 * 179.97438 * 20 19 18 22 22 C 1.46760 * 124.35039 * 174.17970 * 21 20 19 23 23 C 1.54483 * 105.47495 * 197.01498 * 22 21 20 24 24 C 1.54632 * 101.76162 * 334.58134 * 23 22 21 25 25 C 1.34420 * 124.35018 * 353.87236 * 21 20 19 26 26 O 1.21283 * 124.94029 * 359.57978 * 25 21 20 27 27 C 1.39145 * 120.16160 * 0.24774 * 20 19 18 28 28 C 1.37649 * 120.07539 * 359.45044 * 27 20 19 29 29 H 0.97000 * 120.00149 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47006 * 59.99878 * 9 7 2 31 31 H 1.09001 * 109.47129 * 300.00134 * 9 7 2 32 32 H 0.96996 * 119.99879 * 359.97438 * 10 9 7 33 33 H 1.09001 * 109.47198 * 60.00348 * 13 11 10 34 34 H 1.08998 * 109.47457 * 299.99713 * 13 11 10 35 35 H 1.07996 * 120.04229 * 0.02562 * 18 17 15 36 36 H 1.08003 * 119.96381 * 179.97438 * 19 18 17 37 37 H 1.09007 * 110.24253 * 316.01184 * 22 21 20 38 38 H 1.09001 * 110.25115 * 77.92489 * 22 21 20 39 39 H 1.09003 * 110.96764 * 92.69989 * 23 22 21 40 40 H 1.08993 * 110.97121 * 216.46148 * 23 22 21 41 41 H 1.09005 * 110.48552 * 143.47386 * 24 23 22 42 42 H 1.08998 * 110.48476 * 265.98719 * 24 23 22 43 43 H 1.07997 * 119.96161 * 179.72608 * 27 20 19 44 44 H 1.08001 * 120.04079 * 180.24832 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0288 -0.0006 14 8 2.0069 -7.2862 -0.0005 15 6 2.7408 -8.4165 -0.0015 16 8 3.9543 -8.3528 -0.0020 17 6 2.0714 -9.7303 -0.0008 18 6 2.8312 -10.9038 -0.0014 19 6 2.2029 -12.1286 -0.0013 20 6 0.8132 -12.1994 -0.0013 21 7 0.1803 -13.4416 -0.0018 22 6 -1.2697 -13.6322 0.1211 23 6 -1.4591 -15.1160 0.5069 24 6 -0.1748 -15.7576 -0.0676 25 6 0.8191 -14.6183 -0.1207 26 8 2.0181 -14.7479 -0.2492 27 6 0.0537 -11.0335 -0.0065 28 6 0.6753 -9.8054 -0.0003 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 3.1566 -3.4355 0.0002 33 1 3.3597 -5.9715 0.8894 34 1 3.3595 -5.9708 -0.8906 35 1 3.9098 -10.8496 -0.0018 36 1 2.7892 -13.0356 -0.0021 37 1 -1.6704 -12.9854 0.9017 38 1 -1.7597 -13.4229 -0.8298 39 1 -1.5039 -15.2349 1.5895 40 1 -2.3484 -15.5318 0.0333 41 1 0.1832 -16.5495 0.5903 42 1 -0.3585 -16.1482 -1.0685 43 1 -1.0246 -11.0923 -0.0110 44 1 0.0852 -8.9008 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006362215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:56 Heat of formation + Delta-G solvation = -122.088191 kcal Electronic energy + Delta-G solvation = -28193.841133 eV Core-core repulsion = 23883.459934 eV Total energy + Delta-G solvation = -4310.381199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66396 -40.55652 -38.99804 -38.41825 -37.18359 -36.26625 -34.24765 -33.78438 -32.41277 -31.41724 -30.24538 -28.94258 -28.34185 -26.69813 -24.66065 -23.67797 -22.67564 -21.91084 -21.21812 -20.24510 -19.93419 -18.38172 -18.07474 -17.50722 -17.33978 -16.62886 -16.56150 -16.13990 -15.51944 -15.33158 -15.08921 -14.67215 -14.60793 -14.56677 -14.34200 -14.23807 -14.12753 -13.80524 -13.57669 -13.20549 -13.10781 -12.75450 -12.70700 -12.44584 -12.18138 -11.98956 -11.79032 -11.74925 -11.54326 -11.03541 -10.90520 -10.72072 -10.67902 -10.67182 -10.34711 -10.16717 -9.45782 -9.37164 -9.17880 -8.78022 -8.44669 -7.98987 -6.19712 -4.27178 0.35561 1.06195 1.85791 2.17358 2.43674 2.49692 3.18032 3.24495 3.29369 3.30832 3.52968 3.57189 3.73015 3.98626 4.11226 4.26607 4.33062 4.46782 4.60371 4.67613 4.77775 4.79451 4.96037 4.98134 5.05327 5.11137 5.16090 5.16443 5.18464 5.26182 5.26285 5.35216 5.65828 5.73986 5.84084 6.03007 6.07404 6.35165 6.48611 6.57792 7.22181 7.30666 7.42736 7.45475 7.59240 7.70905 7.91783 8.49912 8.70748 8.96129 9.39214 10.90364 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.030022 B = 0.001564 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.429800 B =17900.899413 C =18783.188769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.501 3.499 12 O -0.535 6.535 13 C 0.050 3.950 14 O -0.326 6.326 15 C 0.510 3.490 16 O -0.511 6.511 17 C -0.151 4.151 18 C -0.022 4.022 19 C -0.174 4.174 20 C 0.198 3.802 21 N -0.559 5.559 22 C 0.091 3.909 23 C -0.131 4.131 24 C -0.153 4.153 25 C 0.515 3.485 26 O -0.504 6.504 27 C -0.173 4.173 28 C -0.026 4.026 29 H 0.267 0.733 30 H 0.029 0.971 31 H 0.030 0.970 32 H 0.393 0.607 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.143 0.857 36 H 0.162 0.838 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.135 0.865 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 -32.522 0.602 32.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.413 6.413 13 C -0.028 4.028 14 O -0.240 6.240 15 C 0.356 3.644 16 O -0.401 6.401 17 C -0.153 4.153 18 C -0.041 4.041 19 C -0.194 4.194 20 C 0.103 3.897 21 N -0.282 5.282 22 C -0.031 4.031 23 C -0.169 4.169 24 C -0.193 4.193 25 C 0.305 3.695 26 O -0.379 6.379 27 C -0.193 4.193 28 C -0.045 4.045 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.226 0.774 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.160 0.840 36 H 0.180 0.820 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.153 0.847 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.477 -32.572 0.534 32.670 hybrid contribution 0.942 1.237 -0.023 1.555 sum -1.536 -31.335 0.511 31.377 Atomic orbital electron populations 1.69957 1.06122 1.27516 1.48608 1.24943 0.94930 0.99471 0.94582 0.86446 0.79395 0.82168 0.78734 1.20036 1.21046 1.20030 1.21179 0.93323 0.90328 1.53638 0.91800 1.19172 0.88162 0.81521 0.98017 1.46361 1.11536 1.05348 1.72404 1.19877 0.89100 0.83979 0.78699 1.90697 1.16328 1.84580 1.49675 1.22873 0.94397 0.80826 1.04691 1.86596 1.39931 1.13855 1.83662 1.21125 0.85588 0.84972 0.72764 1.90835 1.14796 1.88021 1.46464 1.19078 0.93966 0.90109 1.12147 1.21159 1.00752 0.89856 0.92340 1.21538 0.92622 0.99860 1.05362 1.18059 0.92048 0.83879 0.95716 1.45816 1.09073 1.04827 1.68470 1.22371 0.79030 0.98292 1.03424 1.22634 0.98207 0.93278 1.02764 1.22358 0.94754 0.97242 1.04955 1.21199 0.88740 0.84698 0.74885 1.90656 1.14507 1.85149 1.47567 1.20758 1.00119 0.90538 1.07931 1.21416 0.93278 0.98281 0.91533 0.92324 0.95258 0.95245 0.77402 0.88427 0.88420 0.83961 0.82034 0.88970 0.89620 0.89394 0.88321 0.87252 0.87115 0.84693 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.55 -14.63 9.28 -34.44 -0.32 -14.95 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.56 5.43 -5.19 -0.03 6.53 16 10 N -0.71 -14.61 5.55 -61.47 -0.34 -14.95 16 11 C 0.50 10.03 7.91 -10.99 -0.09 9.94 16 12 O -0.54 -12.93 16.50 -14.11 -0.23 -13.16 16 13 C 0.05 0.77 5.95 36.00 0.21 0.99 16 14 O -0.33 -5.28 9.00 -47.34 -0.43 -5.70 16 15 C 0.51 7.61 7.89 34.49 0.27 7.88 16 16 O -0.51 -8.36 16.13 -19.27 -0.31 -8.67 16 17 C -0.15 -1.90 5.87 -104.97 -0.62 -2.52 16 18 C -0.02 -0.26 9.58 -39.21 -0.38 -0.63 16 19 C -0.17 -1.90 9.26 -39.46 -0.37 -2.26 16 20 C 0.20 1.88 6.60 -83.73 -0.55 1.33 16 21 N -0.56 -4.04 3.12 -112.26 -0.35 -4.39 16 22 C 0.09 0.28 6.24 -3.12 -0.02 0.26 16 23 C -0.13 -0.16 7.18 -25.10 -0.18 -0.34 16 24 C -0.15 -0.48 6.86 -26.74 -0.18 -0.67 16 25 C 0.52 4.07 7.92 -10.86 -0.09 3.99 16 26 O -0.50 -5.86 14.79 5.55 0.08 -5.78 16 27 C -0.17 -1.53 9.38 -39.46 -0.37 -1.90 16 28 C -0.03 -0.29 9.60 -39.21 -0.38 -0.66 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.14 1.56 7.64 -52.49 -0.40 1.16 16 36 H 0.16 1.88 5.23 -52.48 -0.27 1.60 16 37 H 0.09 0.22 7.69 -51.93 -0.40 -0.18 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.10 -0.06 8.14 -51.93 -0.42 -0.49 16 41 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.14 0.82 6.99 -52.49 -0.37 0.46 16 44 H 0.15 1.66 7.60 -52.49 -0.40 1.26 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -36.22 382.29 -8.79 -45.01 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.52 Total: 2.59 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -3.17 Total: 8.67 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.04 Total: -44.36 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.89 Total: -33.31 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.22 -8.79 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006362215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.073 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds