Wall clock time and date at job start Sat Apr 11 2020 07:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86800 * 120.00299 * 2 1 4 4 H 1.48499 * 109.47529 * 239.99855 * 3 2 1 5 5 H 1.48500 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47302 * 119.99565 * 3 2 1 7 7 C 1.37876 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00202 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47463 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00071 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99879 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00111 * 179.97438 * 11 10 9 14 14 O 1.45199 * 109.47010 * 179.97438 * 13 11 10 15 15 C 1.34760 * 117.00052 * 179.97438 * 14 13 11 16 16 O 1.21511 * 119.99506 * 0.02562 * 15 14 13 17 17 C 1.47456 * 120.00213 * 179.97438 * 15 14 13 18 18 C 1.39802 * 120.07747 * 180.02562 * 17 15 14 19 19 C 1.37650 * 119.92195 * 180.02562 * 18 17 15 20 20 C 1.39152 * 120.07452 * 0.02562 * 19 18 17 21 21 N 1.39415 * 119.91909 * 179.97438 * 20 19 18 22 22 C 1.46760 * 124.35039 * 174.17970 * 21 20 19 23 23 C 1.54483 * 105.47495 * 197.01498 * 22 21 20 24 24 C 1.54632 * 101.76162 * 334.58134 * 23 22 21 25 25 C 1.34420 * 124.35018 * 353.87236 * 21 20 19 26 26 O 1.21283 * 124.94029 * 359.57978 * 25 21 20 27 27 C 1.39145 * 120.16160 * 0.24774 * 20 19 18 28 28 C 1.37649 * 120.07539 * 359.45044 * 27 20 19 29 29 H 0.97000 * 120.00149 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47006 * 59.99878 * 9 7 2 31 31 H 1.09001 * 109.47129 * 300.00134 * 9 7 2 32 32 H 0.96996 * 119.99879 * 359.97438 * 10 9 7 33 33 H 1.09001 * 109.47198 * 60.00348 * 13 11 10 34 34 H 1.08998 * 109.47457 * 299.99713 * 13 11 10 35 35 H 1.07996 * 120.04229 * 0.02562 * 18 17 15 36 36 H 1.08003 * 119.96381 * 179.97438 * 19 18 17 37 37 H 1.09007 * 110.24253 * 316.01184 * 22 21 20 38 38 H 1.09001 * 110.25115 * 77.92489 * 22 21 20 39 39 H 1.09003 * 110.96764 * 92.69989 * 23 22 21 40 40 H 1.08993 * 110.97121 * 216.46148 * 23 22 21 41 41 H 1.09005 * 110.48552 * 143.47386 * 24 23 22 42 42 H 1.08998 * 110.48476 * 265.98719 * 24 23 22 43 43 H 1.07997 * 119.96161 * 179.72608 * 27 20 19 44 44 H 1.08001 * 120.04079 * 180.24832 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0288 -0.0006 14 8 2.0069 -7.2862 -0.0005 15 6 2.7408 -8.4165 -0.0015 16 8 3.9543 -8.3528 -0.0020 17 6 2.0714 -9.7303 -0.0008 18 6 2.8312 -10.9038 -0.0014 19 6 2.2029 -12.1286 -0.0013 20 6 0.8132 -12.1994 -0.0013 21 7 0.1803 -13.4416 -0.0018 22 6 -1.2697 -13.6322 0.1211 23 6 -1.4591 -15.1160 0.5069 24 6 -0.1748 -15.7576 -0.0676 25 6 0.8191 -14.6183 -0.1207 26 8 2.0181 -14.7479 -0.2492 27 6 0.0537 -11.0335 -0.0065 28 6 0.6753 -9.8054 -0.0003 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8903 32 1 3.1566 -3.4355 0.0002 33 1 3.3597 -5.9715 0.8894 34 1 3.3595 -5.9708 -0.8906 35 1 3.9098 -10.8496 -0.0018 36 1 2.7892 -13.0356 -0.0021 37 1 -1.6704 -12.9854 0.9017 38 1 -1.7597 -13.4229 -0.8298 39 1 -1.5039 -15.2349 1.5895 40 1 -2.3484 -15.5318 0.0333 41 1 0.1832 -16.5495 0.5903 42 1 -0.3585 -16.1482 -1.0685 43 1 -1.0246 -11.0923 -0.0110 44 1 0.0852 -8.9008 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006362215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:45:55 Heat of formation + Delta-G solvation = -145.725947 kcal Electronic energy + Delta-G solvation = -28194.866143 eV Core-core repulsion = 23883.459934 eV Total energy + Delta-G solvation = -4311.406209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.27343 -41.70781 -40.45360 -39.47120 -37.79842 -37.49441 -36.17953 -34.42500 -34.33027 -32.24655 -31.23680 -30.29640 -28.67741 -28.45750 -25.60103 -24.55579 -24.28153 -22.68566 -21.95298 -21.65248 -20.93817 -19.52828 -18.99892 -18.77858 -18.09831 -17.83745 -17.76171 -17.32184 -16.97846 -16.67694 -16.20266 -16.19400 -15.89089 -15.29735 -15.15213 -14.82960 -14.75839 -14.71713 -14.51582 -14.47488 -14.19383 -14.01612 -13.76586 -13.72927 -13.46220 -13.25395 -12.95766 -12.68331 -12.42414 -12.34800 -12.23885 -12.01511 -11.93974 -11.82937 -11.52115 -11.29103 -10.92945 -10.81416 -10.80383 -10.20354 -9.92906 -9.18022 -8.29136 -6.45733 -0.54150 0.23599 1.10476 1.18829 1.45024 1.48111 1.54043 1.56527 1.60478 1.66243 2.33997 2.56348 2.66640 3.06048 3.20120 3.51206 3.55586 3.70154 3.77820 3.84043 3.96250 4.03859 4.04688 4.05658 4.13464 4.23314 4.43450 4.60538 4.63850 4.82001 4.89801 4.95167 5.00395 5.07563 5.09274 5.16426 5.18596 5.22511 5.23564 5.32440 5.41719 5.63019 5.79364 5.82310 5.91610 6.51762 6.62804 6.77706 6.83829 7.20298 7.35118 8.82655 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.030022 B = 0.001564 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.429800 B =17900.899413 C =18783.188769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.699 5.699 11 C 0.502 3.498 12 O -0.581 6.581 13 C 0.060 3.940 14 O -0.340 6.340 15 C 0.514 3.486 16 O -0.531 6.531 17 C -0.173 4.173 18 C -0.023 4.023 19 C -0.186 4.186 20 C 0.202 3.798 21 N -0.561 5.561 22 C 0.079 3.921 23 C -0.118 4.118 24 C -0.145 4.145 25 C 0.500 3.500 26 O -0.551 6.551 27 C -0.162 4.162 28 C -0.028 4.028 29 H 0.269 0.731 30 H -0.007 1.007 31 H -0.006 1.006 32 H 0.412 0.588 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.168 0.832 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -33.665 0.664 33.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.287 3.713 12 O -0.461 6.461 13 C -0.017 4.017 14 O -0.256 6.256 15 C 0.361 3.639 16 O -0.422 6.422 17 C -0.175 4.175 18 C -0.042 4.042 19 C -0.206 4.206 20 C 0.106 3.894 21 N -0.282 5.282 22 C -0.041 4.041 23 C -0.156 4.156 24 C -0.185 4.185 25 C 0.292 3.708 26 O -0.429 6.429 27 C -0.182 4.182 28 C -0.047 4.047 29 H 0.078 0.922 30 H 0.011 0.989 31 H 0.012 0.988 32 H 0.248 0.752 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.145 0.855 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.186 0.814 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.630 -33.755 0.601 33.863 hybrid contribution 0.907 1.432 -0.045 1.696 sum -1.723 -32.323 0.556 32.374 Atomic orbital electron populations 1.70116 1.08191 1.28679 1.49722 1.26025 0.95770 1.03781 0.93795 0.85211 0.77905 0.76683 0.79438 1.18766 1.21089 1.18745 1.21589 0.94426 0.90474 1.53249 0.89678 1.18635 0.88550 0.83693 0.94679 1.46040 1.11748 1.04706 1.72510 1.20598 0.89239 0.84619 0.76812 1.90674 1.18738 1.85279 1.51442 1.22769 0.92729 0.79030 1.07175 1.86587 1.40657 1.14298 1.84012 1.21453 0.85405 0.85064 0.71991 1.90814 1.15469 1.88161 1.47736 1.19047 0.94769 0.89068 1.14629 1.21132 1.00727 0.89865 0.92430 1.21519 0.93682 0.99137 1.06284 1.18211 0.91708 0.85411 0.94116 1.46148 1.10923 1.03783 1.67385 1.22779 0.76380 1.00051 1.04875 1.22690 0.98049 0.91479 1.03347 1.22433 0.94165 0.95535 1.06344 1.22206 0.88877 0.86077 0.73607 1.90628 1.16825 1.85924 1.49530 1.20997 1.01592 0.89235 1.06361 1.21468 0.92589 0.99144 0.91495 0.92193 0.98861 0.98834 0.75154 0.85822 0.85844 0.84162 0.82985 0.87806 0.87974 0.88795 0.85479 0.86383 0.85466 0.81416 0.83531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 2 C 0.01 0.34 5.46 84.66 0.46 0.81 16 3 Si 0.98 41.88 29.54 68.60 2.03 43.91 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.56 -29.99 9.28 25.60 0.24 -29.75 16 8 H 0.09 4.10 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.39 5.43 85.63 0.46 14.86 16 10 N -0.70 -29.01 5.55 -466.79 -2.59 -31.60 16 11 C 0.50 20.26 7.91 87.66 0.69 20.95 16 12 O -0.58 -28.98 16.50 15.77 0.26 -28.72 16 13 C 0.06 1.80 5.95 71.23 0.42 2.22 16 14 O -0.34 -10.99 9.00 -50.32 -0.45 -11.44 16 15 C 0.51 15.37 7.89 70.25 0.55 15.92 16 16 O -0.53 -17.27 16.13 19.80 0.32 -16.95 16 17 C -0.17 -4.41 5.87 -20.09 -0.12 -4.53 16 18 C -0.02 -0.54 9.58 22.51 0.22 -0.32 16 19 C -0.19 -4.17 9.26 22.35 0.21 -3.96 16 20 C 0.20 3.67 6.60 38.37 0.25 3.93 16 21 N -0.56 -7.19 3.12 -627.66 -1.96 -9.15 16 22 C 0.08 0.24 6.24 86.83 0.54 0.78 16 23 C -0.12 0.15 7.18 31.65 0.23 0.38 16 24 C -0.15 -0.55 6.86 30.59 0.21 -0.34 16 25 C 0.50 7.46 7.92 87.90 0.70 8.16 16 26 O -0.55 -13.17 14.79 -3.04 -0.04 -13.21 16 27 C -0.16 -2.60 9.38 22.35 0.21 -2.39 16 28 C -0.03 -0.60 9.60 22.51 0.22 -0.39 16 29 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 30 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.41 13.87 8.32 -92.71 -0.77 13.10 16 33 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 34 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.14 3.26 7.64 -2.91 -0.02 3.24 16 36 H 0.15 3.76 5.23 -2.91 -0.02 3.74 16 37 H 0.10 0.11 7.69 -2.38 -0.02 0.09 16 38 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 40 H 0.13 -0.79 8.14 -2.39 -0.02 -0.81 16 41 H 0.12 0.29 8.14 -2.38 -0.02 0.27 16 42 H 0.13 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.17 1.53 6.99 -2.91 -0.02 1.51 16 44 H 0.15 3.24 7.60 -2.91 -0.02 3.22 16 Total: -1.00 -82.70 382.29 3.62 -79.08 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.28 Total: 16.76 kcal Atomic # 6 Polarization: 20.82 SS G_CDS: 5.49 Total: 26.32 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -4.26 Total: -95.73 kcal Atomic # 8 Polarization: -70.41 SS G_CDS: 0.08 Total: -70.33 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -82.70 3.62 -79.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006362215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.649 kcal (2) G-P(sol) polarization free energy of solvation -82.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds