Wall clock time and date at job start Sat Apr 11 2020 07:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00020 * 2 1 4 4 H 1.48506 * 109.47126 * 270.00147 * 3 2 1 5 5 H 1.48501 * 109.47414 * 30.00258 * 3 2 1 6 6 H 1.48497 * 109.47126 * 150.00223 * 3 2 1 7 7 C 1.38810 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00076 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00513 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47323 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47323 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99639 * 270.00269 * 12 11 10 14 14 C 1.52996 * 109.47156 * 274.86139 * 13 12 11 15 15 O 1.42903 * 109.47342 * 65.00134 * 14 13 12 16 16 C 1.34770 * 119.99890 * 89.99508 * 12 11 10 17 17 O 1.21637 * 120.00327 * 5.59578 * 16 12 11 18 18 C 1.47196 * 119.99698 * 185.58816 * 16 12 11 19 19 C 1.35892 * 120.49645 * 55.09221 * 18 16 12 20 20 O 1.33707 * 122.50584 * 179.97438 * 19 18 16 21 21 C 1.34508 * 122.86632 * 0.02562 * 20 19 18 22 22 O 1.21616 * 120.26861 * 180.02562 * 21 20 19 23 23 C 1.46871 * 119.46880 * 0.27321 * 21 20 19 24 24 C 1.39360 * 122.10247 * 179.70414 * 23 21 20 25 25 C 1.37831 * 119.49494 * 180.02562 * 24 23 21 26 26 C 1.38804 * 120.69034 * 0.02562 * 25 24 23 27 27 C 1.37936 * 120.69329 * 359.35241 * 26 25 24 28 28 C 1.39064 * 119.51373 * 0.93681 * 27 26 25 29 29 H 0.96998 * 119.99761 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99912 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46689 * 59.99872 * 10 9 7 32 32 H 1.09000 * 109.46488 * 299.99986 * 10 9 7 33 33 H 1.09007 * 109.46996 * 60.00029 * 11 10 9 34 34 H 1.08997 * 109.47255 * 300.00230 * 11 10 9 35 35 H 1.08997 * 109.47539 * 34.86246 * 13 12 11 36 36 H 1.09002 * 109.47122 * 154.86014 * 13 12 11 37 37 H 1.09003 * 109.47417 * 185.00683 * 14 13 12 38 38 H 1.09002 * 109.47313 * 305.00453 * 14 13 12 39 39 H 0.96697 * 114.00053 * 179.97438 * 15 14 13 40 40 H 1.07994 * 118.74007 * 0.02562 * 19 18 16 41 41 H 1.08002 * 120.25490 * 0.04747 * 24 23 21 42 42 H 1.07998 * 119.65527 * 179.97438 * 25 24 23 43 43 H 1.07998 * 119.65456 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.23965 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 7 1.7963 -6.0885 -0.0006 13 6 2.1634 -6.7229 -1.2690 14 6 0.9936 -7.5706 -1.7727 15 8 -0.1126 -6.7203 -2.0816 16 6 2.1324 -6.6719 1.1669 17 8 1.7409 -6.2002 2.2175 18 6 2.9732 -7.8801 1.1705 19 6 4.1822 -7.8808 0.5502 20 8 4.9784 -8.9548 0.5290 21 6 4.6495 -10.1189 1.1172 22 8 5.4104 -11.0665 1.0691 23 6 3.3618 -10.2382 1.8134 24 6 2.9631 -11.4196 2.4360 25 6 1.7424 -11.4721 3.0737 26 6 0.9089 -10.3624 3.1007 27 6 1.2908 -9.1802 2.5014 28 6 2.5159 -9.1083 1.8474 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6847 -3.7145 0.8894 32 1 2.6847 -3.7145 -0.8906 33 1 0.4375 -4.7617 -0.8915 34 1 0.4368 -4.7621 0.8885 35 1 2.3984 -5.9541 -2.0051 36 1 3.0351 -7.3597 -1.1179 37 1 1.2967 -8.1124 -2.6686 38 1 0.7008 -8.2814 -0.9999 39 1 -0.8916 -7.1912 -2.4079 40 1 4.5129 -6.9792 0.0562 41 1 3.6060 -12.2873 2.4192 42 1 1.4307 -12.3864 3.5567 43 1 -0.0443 -10.4223 3.6049 44 1 0.6367 -8.3212 2.5273 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733622745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:13 Heat of formation + Delta-G solvation = -111.268938 kcal Electronic energy + Delta-G solvation = -30297.041644 eV Core-core repulsion = 25987.129603 eV Total energy + Delta-G solvation = -4309.912041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.07419 -41.20233 -39.82533 -39.14881 -38.18705 -37.07495 -35.98788 -34.65721 -33.34067 -32.46254 -31.29871 -30.61394 -29.01282 -26.61476 -25.82483 -25.46218 -24.15895 -23.78265 -22.91583 -21.06598 -20.16408 -19.84001 -19.20147 -18.77079 -18.37643 -18.01149 -17.51942 -17.47672 -16.83400 -16.61007 -16.33835 -15.93157 -15.62495 -15.43930 -15.25593 -15.11311 -15.06870 -14.97297 -14.73733 -14.37229 -14.25045 -14.04476 -13.89435 -13.32353 -13.07644 -13.01313 -12.92750 -12.75473 -12.55735 -12.44869 -12.18772 -12.11891 -11.87436 -11.59899 -11.37286 -11.07377 -10.97234 -10.88195 -10.29764 -9.83214 -9.32939 -9.04817 -7.96263 -5.26878 -0.67910 -0.48725 0.52473 1.06186 1.28092 1.47079 1.49764 1.52119 1.58100 1.79435 2.55992 2.64577 2.69091 3.19896 3.22289 3.36606 3.37643 3.64119 3.72268 4.01396 4.06868 4.09088 4.15144 4.15615 4.27018 4.27641 4.34270 4.38295 4.45375 4.56463 4.58106 4.67651 4.80802 4.85494 4.99611 5.05188 5.10712 5.22811 5.31237 5.40995 5.50003 5.68307 5.83528 6.07380 6.23438 6.25267 6.92184 6.94234 7.31156 8.03577 8.28010 9.27292 Molecular weight = 346.14amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.002564 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.946864 B =10919.436223 C =11130.911025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.977 3.023 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.743 5.743 10 C 0.148 3.852 11 C 0.131 3.869 12 N -0.586 5.586 13 C 0.089 3.911 14 C 0.061 3.939 15 O -0.588 6.588 16 C 0.574 3.426 17 O -0.563 6.563 18 C -0.230 4.230 19 C 0.143 3.857 20 O -0.262 6.262 21 C 0.525 3.475 22 O -0.474 6.474 23 C -0.194 4.194 24 C -0.044 4.044 25 C -0.121 4.121 26 C -0.064 4.064 27 C -0.130 4.130 28 C 0.012 3.988 29 H 0.253 0.747 30 H 0.375 0.625 31 H 0.005 0.995 32 H 0.034 0.966 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.394 0.606 40 H 0.234 0.766 41 H 0.155 0.845 42 H 0.171 0.829 43 H 0.160 0.840 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.477 -28.923 -1.203 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.806 3.194 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.380 4.380 8 H 0.094 0.906 9 N -0.386 5.386 10 C 0.020 3.980 11 C 0.008 3.992 12 N -0.317 5.317 13 C -0.033 4.033 14 C -0.018 4.018 15 O -0.397 6.397 16 C 0.362 3.638 17 O -0.442 6.442 18 C -0.234 4.234 19 C 0.079 3.921 20 O -0.171 6.171 21 C 0.373 3.627 22 O -0.361 6.361 23 C -0.196 4.196 24 C -0.062 4.062 25 C -0.138 4.138 26 C -0.082 4.082 27 C -0.148 4.148 28 C 0.011 3.989 29 H 0.062 0.938 30 H 0.206 0.794 31 H 0.023 0.977 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.244 0.756 40 H 0.249 0.751 41 H 0.172 0.828 42 H 0.189 0.811 43 H 0.178 0.822 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.400 -28.586 -0.594 28.929 hybrid contribution -0.676 0.992 0.042 1.201 sum 3.724 -27.594 -0.552 27.850 Atomic orbital electron populations 1.69825 1.06663 1.26252 1.59145 1.25625 0.96477 1.01247 1.03353 0.85091 0.77588 0.79126 0.77635 1.20893 1.22110 1.19563 1.19595 0.91471 0.85116 1.41769 0.90641 1.42389 1.05691 1.00996 1.89548 1.20990 0.94302 0.85191 0.97519 1.21325 0.93687 0.81073 1.03137 1.47759 1.55704 1.22114 1.06107 1.22286 0.97855 0.98638 0.84492 1.22659 0.87227 0.92050 0.99825 1.86528 1.26291 1.38426 1.88423 1.17861 0.79850 0.82531 0.83558 1.90848 1.55483 1.65239 1.32631 1.20433 0.98566 0.95455 1.08969 1.24102 0.87263 0.88137 0.92592 1.83319 1.48340 1.20175 1.65303 1.20617 0.86152 0.79918 0.76056 1.90919 1.53933 1.33322 1.57915 1.20004 0.94894 0.97019 1.07692 1.21359 0.96676 0.95706 0.92459 1.21647 0.92941 1.00206 0.99020 1.21812 1.00539 0.91221 0.94624 1.21263 0.95436 0.99481 0.98619 1.18629 0.94681 0.90145 0.95418 0.93847 0.79353 0.97695 0.94850 0.88515 0.92361 0.88300 0.86480 0.89651 0.93797 0.75592 0.75056 0.82757 0.81117 0.82206 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 2 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 3 Si 0.98 46.73 29.55 68.60 2.03 48.75 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.74 -39.32 5.60 -343.47 -1.92 -41.24 16 10 C 0.15 6.14 6.58 86.38 0.57 6.71 16 11 C 0.13 4.54 5.38 86.38 0.46 5.00 16 12 N -0.59 -15.22 2.46 -825.96 -2.03 -17.25 16 13 C 0.09 1.52 5.65 86.38 0.49 2.01 16 14 C 0.06 0.90 7.39 71.98 0.53 1.43 16 15 O -0.59 -11.33 12.05 -148.98 -1.79 -13.13 16 16 C 0.57 16.18 6.49 86.60 0.56 16.74 16 17 O -0.56 -21.31 15.57 -4.15 -0.06 -21.37 16 18 C -0.23 -4.91 5.04 -19.03 -0.10 -5.00 16 19 C 0.14 2.29 8.74 67.27 0.59 2.88 16 20 O -0.26 -4.85 9.75 24.66 0.24 -4.61 16 21 C 0.52 11.21 8.18 70.08 0.57 11.78 16 22 O -0.47 -12.19 17.39 19.46 0.34 -11.85 16 23 C -0.19 -3.73 5.89 -20.02 -0.12 -3.85 16 24 C -0.04 -0.64 9.66 22.44 0.22 -0.42 16 25 C -0.12 -1.28 10.01 22.31 0.22 -1.06 16 26 C -0.06 -0.85 10.02 22.33 0.22 -0.63 16 27 C -0.13 -2.62 9.38 22.40 0.21 -2.41 16 28 C 0.01 0.26 5.90 -19.91 -0.12 0.14 16 29 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.37 21.02 7.67 -92.71 -0.71 20.31 16 31 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.10 3.33 6.69 -2.38 -0.02 3.31 16 34 H 0.06 2.33 7.35 -2.39 -0.02 2.31 16 35 H 0.10 1.71 8.11 -2.39 -0.02 1.70 16 36 H 0.12 1.31 4.44 -2.39 -0.01 1.30 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.39 4.23 9.12 -74.06 -0.68 3.56 16 40 H 0.23 2.26 7.48 -2.91 -0.02 2.24 16 41 H 0.15 1.82 7.80 -2.91 -0.02 1.80 16 42 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 43 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.12 2.94 6.72 -2.91 -0.02 2.92 16 Total: -1.00 -81.80 376.74 2.39 -79.41 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: -0.31 Total: 25.28 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 5.62 Total: 16.03 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -3.67 Total: -118.51 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -1.28 Total: -50.96 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.75 kcal Total: -81.80 2.39 -79.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733622745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.855 kcal (2) G-P(sol) polarization free energy of solvation -81.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds