Wall clock time and date at job start Sat Apr 11 2020 07:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81403 * 103.00161 * 2 1 4 4 C 1.52998 * 109.47338 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46975 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99926 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99959 * 179.97438 * 5 4 3 8 8 C 1.47065 * 136.05922 * 354.04561 * 7 5 4 9 9 C 1.53235 * 88.08458 * 207.20181 * 8 7 5 10 10 C 1.47069 * 136.05719 * 174.41210 * 7 5 4 11 11 H 1.09004 * 113.46548 * 267.68708 * 10 7 5 12 12 C 1.52993 * 113.46889 * 38.06357 * 10 7 5 13 13 N 1.46501 * 109.47376 * 185.42862 * 12 10 7 14 14 C 1.46499 * 119.99708 * 90.49741 * 13 12 10 15 15 C 1.34774 * 120.00066 * 270.49792 * 13 12 10 16 16 O 1.21277 * 120.00116 * 359.97438 * 15 13 12 17 17 C 1.50698 * 119.99866 * 179.97438 * 15 13 12 18 18 S 1.81002 * 109.47024 * 179.97438 * 17 15 13 19 19 C 1.76206 * 100.00011 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99859 * 359.97438 * 19 18 17 21 21 C 1.38800 * 119.99819 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00210 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99716 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47175 * 90.00202 * 23 21 19 25 25 H 1.48495 * 109.47168 * 210.00014 * 23 21 19 26 26 H 1.48499 * 109.47210 * 330.00088 * 23 21 19 27 27 H 1.08995 * 109.47040 * 299.99568 * 1 2 3 28 28 H 1.08995 * 109.47583 * 59.99852 * 1 2 3 29 29 H 1.09004 * 109.46798 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46838 * 59.99671 * 3 2 1 31 31 H 1.08998 * 109.46920 * 300.00660 * 3 2 1 32 32 H 1.09000 * 109.46856 * 60.00198 * 4 3 2 33 33 H 1.09002 * 109.46932 * 299.99734 * 4 3 2 34 34 H 1.09004 * 113.46633 * 321.93269 * 8 7 5 35 35 H 1.08999 * 113.46614 * 92.37239 * 8 7 5 36 36 H 1.08997 * 114.32450 * 220.47263 * 9 8 7 37 37 H 1.09003 * 114.02131 * 87.71437 * 9 8 7 38 38 H 1.08999 * 109.47343 * 305.43349 * 12 10 7 39 39 H 1.09008 * 109.47017 * 65.42924 * 12 10 7 40 40 H 1.08991 * 109.47365 * 87.07446 * 14 13 12 41 41 H 1.09009 * 109.46909 * 207.07122 * 14 13 12 42 42 H 1.09006 * 109.47407 * 327.06617 * 14 13 12 43 43 H 1.09003 * 109.47040 * 299.99886 * 17 15 13 44 44 H 1.08996 * 109.47499 * 60.00137 * 17 15 13 45 45 H 0.97002 * 120.00077 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0812 3.4084 -0.0013 6 8 3.1942 4.2355 -0.0008 7 7 5.3701 3.8025 -0.0014 8 6 6.6795 3.1415 0.1048 9 6 7.2313 4.4435 0.6952 10 6 6.0857 5.0834 -0.1013 11 1 6.3607 5.3485 -1.1222 12 6 5.3928 6.2280 0.6406 13 7 6.1041 7.4816 0.3781 14 6 5.7136 8.3213 -0.7571 15 6 7.1175 7.8622 1.1808 16 8 7.4404 7.1673 2.1208 17 6 7.8494 9.1515 0.9104 18 16 9.1452 9.3817 2.1531 19 6 9.8195 10.9168 1.6112 20 1 9.4096 11.4099 0.7421 21 6 10.8781 11.4917 2.3006 22 7 11.3786 10.8900 3.3589 23 14 11.5934 13.1187 1.7257 24 1 10.8775 14.2368 2.3909 25 1 13.0354 13.1766 2.0755 26 1 11.4360 13.2362 0.2538 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8031 2.2371 0.8900 31 1 1.8030 2.2371 -0.8899 32 1 4.1608 1.4705 -0.8909 33 1 4.1616 1.4703 0.8892 34 1 6.6897 2.3090 0.8084 35 1 7.1151 2.8836 -0.8605 36 1 8.2264 4.7111 0.3401 37 1 7.1218 4.5217 1.7769 38 1 4.3631 6.3150 0.2940 39 1 5.3997 6.0237 1.7114 40 1 4.9154 8.9974 -0.4513 41 1 6.5732 8.9020 -1.0921 42 1 5.3620 7.6893 -1.5727 43 1 8.2996 9.1125 -0.0816 44 1 7.1482 9.9845 0.9587 45 1 12.1187 11.2916 3.8405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736022911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:43:28 Heat of formation + Delta-G solvation = -31.661456 kcal Electronic energy + Delta-G solvation = -25259.104878 eV Core-core repulsion = 21530.841699 eV Total energy + Delta-G solvation = -3728.263180 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 346.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90913 -39.30339 -38.14053 -35.26366 -33.35308 -32.44065 -30.80242 -29.87116 -29.37484 -28.09947 -26.38406 -25.49996 -24.91776 -23.39122 -21.84771 -19.26291 -19.11786 -17.72431 -17.56615 -16.75828 -16.39157 -16.34991 -16.30555 -15.69716 -15.45331 -14.82910 -14.80789 -14.24343 -14.17381 -13.98138 -13.69697 -13.53470 -13.30164 -13.17907 -12.94055 -12.91524 -12.62516 -12.53730 -12.36806 -12.25726 -12.06737 -11.86299 -11.67144 -11.64070 -11.07406 -11.03337 -10.79828 -10.75926 -10.47520 -10.00660 -9.81010 -9.37160 -9.08009 -9.07098 -8.50013 -8.24084 -8.15471 -6.51158 -6.22891 -3.93342 1.14059 2.09696 2.30722 2.44784 3.00483 3.05283 3.21453 3.26509 3.30022 3.62278 4.09537 4.19361 4.25289 4.31418 4.45810 4.68282 4.69800 4.71455 4.75712 4.93363 4.99164 5.02999 5.10322 5.12370 5.14020 5.17028 5.23258 5.24743 5.36086 5.43366 5.49710 5.50522 5.68708 5.72062 5.79128 5.88065 5.94999 6.12160 6.14011 6.60611 7.43276 7.52377 7.58624 7.82866 8.34000 8.54081 9.22629 10.84473 Molecular weight = 346.12amu Principal moments of inertia in cm(-1) A = 0.035614 B = 0.001732 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.028063 B =16158.706725 C =16493.778564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.268 6.268 3 C -0.068 4.068 4 C -0.118 4.118 5 C 0.547 3.453 6 O -0.540 6.540 7 N -0.642 5.642 8 C 0.096 3.904 9 C -0.141 4.141 10 C 0.119 3.881 11 H 0.094 0.906 12 C 0.114 3.886 13 N -0.622 5.622 14 C 0.080 3.920 15 C 0.533 3.467 16 O -0.512 6.512 17 C -0.151 4.151 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.983 -19.709 -11.070 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.042 6.042 3 C -0.217 4.217 4 C -0.159 4.159 5 C 0.335 3.665 6 O -0.417 6.417 7 N -0.378 5.378 8 C -0.026 4.026 9 C -0.178 4.178 10 C 0.015 3.985 11 H 0.112 0.888 12 C -0.010 4.010 13 N -0.359 5.359 14 C -0.064 4.064 15 C 0.321 3.679 16 O -0.385 6.385 17 C -0.301 4.301 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.437 -21.251 -9.532 28.507 hybrid contribution -0.791 2.864 -1.674 3.411 sum -17.228 -18.387 -11.207 27.577 Atomic orbital electron populations 1.23371 0.93509 1.06582 1.05222 1.86795 1.08154 1.11123 1.98163 1.23103 0.98133 0.93784 1.06634 1.21286 0.95248 0.93694 1.05699 1.20019 0.80250 0.90622 0.75584 1.90711 1.45738 1.54823 1.50467 1.49767 1.04162 1.11194 1.72681 1.23040 0.80605 0.97908 1.01075 1.23453 0.98523 0.93928 1.01927 1.23183 0.89927 0.85526 0.99901 0.88836 1.21568 0.95706 0.82296 1.01406 1.47819 1.35283 1.22288 1.30487 1.21791 1.01289 0.94969 0.88310 1.20359 0.78950 0.87063 0.81535 1.90676 1.64370 1.54649 1.28832 1.23565 1.03385 0.96693 1.06487 1.85360 1.34453 1.29031 1.34534 1.22864 1.20994 1.07587 1.16932 0.90969 1.24980 0.95730 0.98184 0.94622 1.70013 1.24431 1.38431 1.17386 0.86179 0.78209 0.82199 0.78982 1.20281 1.20752 1.19707 0.90271 0.90338 0.87956 0.89073 0.89205 0.88009 0.87946 0.90062 0.89554 0.88900 0.87627 0.89342 0.89379 0.92618 0.90387 0.91619 0.89265 0.89321 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.76 101.05 1.09 0.47 16 2 S -0.27 -2.06 22.38 -107.50 -2.41 -4.47 16 3 C -0.07 -0.54 5.23 37.16 0.19 -0.35 16 4 C -0.12 -0.90 5.54 -27.88 -0.15 -1.05 16 5 C 0.55 5.86 8.00 -10.99 -0.09 5.77 16 6 O -0.54 -7.55 15.32 5.56 0.09 -7.46 16 7 N -0.64 -6.39 3.57 -177.62 -0.63 -7.03 16 8 C 0.10 0.72 8.41 -8.65 -0.07 0.65 16 9 C -0.14 -1.47 7.32 -26.35 -0.19 -1.66 16 10 C 0.12 1.30 4.30 -72.40 -0.31 0.99 16 11 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 12 C 0.11 1.51 5.16 -4.04 -0.02 1.49 16 13 N -0.62 -8.76 2.87 -181.57 -0.52 -9.28 16 14 C 0.08 0.86 10.29 59.85 0.62 1.47 16 15 C 0.53 9.73 7.69 -10.99 -0.08 9.64 16 16 O -0.51 -10.88 14.65 5.56 0.08 -10.80 16 17 C -0.15 -2.99 4.67 36.00 0.17 -2.82 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 23 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.09 0.79 8.10 -51.92 -0.42 0.37 16 31 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.11 1.32 7.82 -51.93 -0.41 0.91 16 38 H 0.09 1.19 6.91 -51.93 -0.36 0.83 16 39 H 0.09 1.35 7.16 -51.92 -0.37 0.97 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.82 6.33 -51.92 -0.33 0.49 16 42 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 43 H 0.09 1.62 7.41 -51.92 -0.38 1.23 16 44 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 401.38 15.07 6.05 6.05 Total: -1.00 -34.78 401.38 -9.81 -44.60 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.30 Total: -0.68 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 1.34 Total: 1.85 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.42 Total: -41.41 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.17 Total: -18.26 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -4.62 Total: -8.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.78 -9.81 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736022911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.935 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds